RNA id: XM_036964866.1


Basic Information

Item Value
RNA id XM_036964866.1
length 4080
RNA type mRNA
GC content 0.55
exon number 13
gene id LOC110507396
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5822646 ~ 5870186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTGGCATCCCTTTCCGCTGAGTTCTTTCCCACCGCCGATACGCATGGTTACTTGATCGGGACCTGGGTGATTCGGATCTGTTAGCCCTGAGCGAAAGTGACCACACGGGTTGGAAAGCCTACGGAAAGAGTGAGGGACGAAGCATGCAGTGGATAAACAAGAGAGTAGAGTCTTGACTTCTAGAGAGGGAGATTCTACTTCATTTGGCTATCAATTTGAGTCCTTTGCGCAAAGAAGGAAAGGGTGTATGCGTATGTGTTTAGTTTGAAGGGCGAGTGCGTTGCGCATAGGGAGAGTGTAATTGGGAAGAGAGCTCAAGTCAGGGAGCCAGCAGGTCTGACATTCAAAGCCTTAACCGCAGGTGGAGGGAAGATCGACCTGGTGGAGTGAGcgtattttttcttcttctgtggcaAGACCCACTCTGGATACCGCACCAAGAGCGGGAGAAGCCGGGGCGAGTGGTCGAGGAGGGGCGGGCAGGCAGGAGGAACTCCCCAAGGGGAACAGCACAAAAAAGGCAACAATGCCAAATACGTCGCGATGAACTGACGCTCAAAGAGAGCTGAGAAAGGGATATTATAGAGTAGAGGGGACACCGCATTGTTTTACGTCCTCGATAATTTGAcgttgagatggagagagaacgagcGCACGGACGAAAGCCGGTTGATTGCTGCAGGGGAGGCGCGAGGACCAGCACCAGGACAGAGATGAGGAAAGAACGGGGCCGGGGACAGCAGTGGACCGTGATTTTTATCGTCGCCCTTTCTCTGCAACCGCAGgttgtgTGTGCAGTGGGGATGTTTGAGCTCCAGATCCGTCACTTCCAGAACCCCCATGGTGTGCTGCAGAGTGGGGAGTGCTGTGACCTCCAGGCCACAGGGGGGCAGCGCTGCTCTCTCACGGACCAGTGTGACACCTTCTTCAGGGCCTGCCTCAAGGAGTACCAGGCCCGGGTCGTCCCCACAGGAGCCTGCACCTTCGGGGCGGGCAGCACCACCGTCCTGGGGGGCAACACCCAATCCCTCCGTCATCAAGGGCACgacggaggaggaagagaggatggcaCTACAGGGCACATCATCATTCCCTTCAAATACGCCTGGCCGAAATCTTTCTCCTTGGTGTTAGAGGCTCTGGACCATGACAACGAAACATCAGAATCAGgTCAGGCTGGTCTGATCGAGcgtgtcctcctgtcctccatgttgAATCCCGGCGAGCAGTGGCAGACTTACCGTCACCACGGACGCCCGCTCAGCCTGGAGTACCGCCTGCGGTACCGCTGTGACTCCAACTACTACGGCCCCTTCTGCAACAAGTTCTGCCGGCCCCGGGACGACTTCTTCGGACACTTTGGCTGTGACCTCAGCGGCATCAAGGTCTGCAAGGAGGGCTGGACCGGGCCGGAGTGTCAAGAAGcgGTGTGTAGACAGGGGTGTCACCAGATCCACGGCTCCTGCTCTGTGCCTGGAGAATGCAAGTGTCACTATGGCTATCAGGGAGCTCTCTGTGACCAGTGTGCGACGTTCCCAGGCTGCGTCTATGGCAGCTGCGCTGAaccctggcagtgtgtgtgtgacgtcaACTGGGGAGGCCTGCTGTGTAACAAAGATCTGAACTACTGCGGTACCCACCGACCCTGTAAGAATGGGGGCACCTGTTCCAACACAGAGCCTAACGAGTACCAGTGTGAGTGCCAAGAGGGCTTCCGCGGGCGCAACTGTGATATCGTGGAGCATGCgtgcctctcctccccctgtgcGAACGGGGCCACCTGTGCGGAGGACCCTTCGGGTTTCAACTGTGTCTGTGCCGACAGCTGGACCGGACACACCTGCGCAGACGTGGTGCGGCAGTGTGACTCAAAACCGTGTGGGCGCGGAGCAACGTGCCAGGAGTCTCCAGAGAGGTTCCGGTGCCTCTGCCCCCCCGGCTGGACTGGCAGAACCTGCCGACTAGACACCAACGAGTGtgacatgggtgtgtgtgtccatgcccGCTCCTGCCGTAATCTGATTGGCGGATACCTGTGTGATTGCCTGCCAGGCTGGGCGGGGCCAAACTGTGACATTAGGAACAGCAGTTGCCAGGGGTTGTGTCTAAACGGAGGTCACTGTGAGGACTCTGTGTCAGGCTCACGCTGCCTGTGTGTGCCTGGTTTCTCTGGGAAGCACTGCCAGACTGGCCCCAGTCCCTGTGACAGCACCCCCTGTCAGCACGGAGGCCAGTGTGTGGACAAGGAGGGCAGGGCGGAGCTGTGTAGCTGTCCCATCGGCTACTCAGGGACGTACTGCGAGGTGGTGGTGGATCTGTGCAATCCCAACCCATGCCAGCAGGGGGTGTCCTGTCAGAGCACCGAGGGGGGGTACATGTGTGCCTGCTCCGAGGGTTACTATGGTAACGAGTGCACAAGCCTTAAGGACCCCTGTCATGGCCAACACTGTCCAGgTGCCATGTCAGACCCGGCTCGTGGAGGGGTCAATCTCTACATGGTGTTGGTGGGTGTGTCAGCGTTACTAATGGCGTGCGGCTGCGCAGCTtgcgctctcttcctctcccgtCTCCACCGACGACGGAAAAAAACGCAGGGCGGGCCCCAGGAGGAGGGCATCAACAACCAGAGGGAGTTGGTCACCCTCGTCCGAAACCTGGACCGCCCCGCACCCCTCCTGCCCCCTCTCACCCCCAACACCACCGCCCACACCCCTGTCCCTGTACTGCGCTGCTGCGAGGAGATCGAGCTCACTCTGCCCCCCTCCCCGGCCCCCTCACACCCCTCCCCTGCACTCAAACCCTCAACCCCCGCTGCCAAACAGGACATCTCCAACCTGGAGAGGGAGAAGCTCAACCGCTTCCACTACTCAGACAATCAGGAACTGGAGGTGTGACCTTTGAACTGTCAGAGGCTTTTATTATTTTTGCGCCCACTTCTCTCTGCCTGGCCCTGGACCCCAGCGCTGTGCCATgctgcataggttcctgtggtgATGACCTCACCCGACCCATCCCTCTCTGAGTTGACTCCTCATCTTTTGTGAGCTGAGATTGTCATCTGCTAAATAGCATATATTATTGGTGTAGAATGCTGGGCCTACGGGGTTGCTAAGCAGATCATCAAGAAACAGCATGGCGGTGAACTTTAACCTCCGACTTATGACATCATGCACTTCTGACCTGCTGACCCCGGAGCTAATCTTATGAAGGTTGGCCTTGAGTTAGAGTCTGGCTTGTGTCTGAGGGTCTCTGTGTTTTATGGGAACAACTGTGAGGAGCCATTTGAGCCATTCCCCAGGTGTTAATATCCCTCTGTAGGCACCCCACTGCCCTGGTTGCCCTGGAAGGCCTGGATGGCCTGCTAGTGGTATCTGTAACTGAACCTCTACAGAGACTGTGGCCCTGCACTGTGGCCTCCTGGGCTGGAAGGCAACTGACAGGGGATGCGAGGGAAGGGCAAAGTGATTTTTAATTCCAACTAGTCCATTTCCACATTAATTATTGAAGGATAAACTGTGGTgtaattattgtgtgtgtgtgtctttgtgtctgcGTGTGTCAGTGCGAGGTGTGTGTACGCGGGTCAGTGCGAGGTGTGTGTACGCGTGACagtgcgaggtgtgtgtgtgataagcATTACAGACCATCATGCCTGTtgccaggagggagagagaaaatgactGAAGGAGCAACAAAAGAGCAAAAAAGAATCAATGAATGCAAgctttagatttaaaaaaaaaaaaaaaagagggaaaGGTCAGACAAGAGAGTAGAGCCTGACCCCAATCCATTTGAACCATGAGAGAACGGAGTTAAAACACAACACTGTTGCCTGTGCGGTCTCTGTAACACACTGCGGTTGTCAaagatgtcaaatgttttttataccTGTGTGTAAAATAGCTCTGTTGTATATATGTTGTACATATTGATATTGGGGGTTTTTTTTGTACTGTGGTTTGTCTCTGAATGTCGCTGTTTTACTTTGCGCtatttgtcctctctctccttccattcgTCTGGGGCTGCCAGCAGGTGTGGATCGTAATTAAAGTGCATTTACCTTCCAAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339413 lncRNA upstream 1957 5820288 ~ 5820689 (+) True G2045130
TU2339401 lncRNA upstream 7876 5814296 ~ 5814770 (+) True G2045124
TU2339383 lncRNA upstream 26149 5795997 ~ 5796497 (+) True G2045106
TU2339391 lncRNA upstream 46079 5776329 ~ 5776567 (+) True G2045114
TU2339388 lncRNA upstream 49201 5772686 ~ 5773445 (+) True G2045111
TU2339610 lncRNA downstream 66153 5936339 ~ 5936640 (+) True G2045268
TU2339614 lncRNA downstream 80865 5951051 ~ 5951352 (+) True G2045272
TU2339615 lncRNA downstream 81518 5951704 ~ 5953046 (+) True G2045273
TU2339606 lncRNA downstream 84429 5954615 ~ 5955444 (+) True LOC110507399
TU2339624 lncRNA downstream 137788 6007974 ~ 6011892 (+) True G2045277
XM_036964877.1 mRNA upstream 21133 5798613 ~ 5801513 (+) True snrpa
XM_021587364.2 mRNA upstream 28208 5769612 ~ 5794438 (+) False LOC110507392
XM_036964869.1 mRNA upstream 28208 5777019 ~ 5794438 (+) False LOC110507392
XM_021587365.2 mRNA upstream 28208 5783834 ~ 5794438 (+) True LOC110507392
XM_036964876.1 mRNA upstream 58390 5756609 ~ 5764256 (+) False LOC110507055
XM_036964871.1 mRNA downstream 4505 5874691 ~ 5896125 (+) False LOC110507397
XM_036964870.1 mRNA downstream 4505 5874691 ~ 5896127 (+) False LOC110507397
XM_036964872.1 mRNA downstream 4505 5874691 ~ 5896127 (+) False LOC110507397
XR_005039971.1 mRNA downstream 4505 5874691 ~ 5896127 (+) False LOC110507397
XM_036964868.1 mRNA downstream 27022 5897208 ~ 5910058 (+) False LOC110507398
TU2337845 other upstream 1129774 4685915 ~ 4692872 (+) False LOC110507374
TU2337846 other upstream 1131519 4685885 ~ 4691127 (+) False LOC110507374
TU2337847 other upstream 1131519 4685915 ~ 4691127 (+) True LOC110507374
TU2337325 other upstream 1416520 4405458 ~ 4406126 (+) True G2043193
TU2334775 other upstream 2983719 2834096 ~ 2838927 (+) True G2040882
TU2339431 other downstream 21661 5891847 ~ 5896113 (+) False LOC110507397
TU2339420 other downstream 22837 5893023 ~ 5896113 (+) True LOC110507397
TU2339435 other downstream 27331 5897517 ~ 5907239 (+) True LOC110507398
TU2339902 other downstream 624647 6494833 ~ 6495134 (+) True G2045522
TU2340040 other downstream 822358 6692544 ~ 6693044 (+) True G2045655

Expression Profile