RNA id: XR_005039971.1


Basic Information

Item Value
RNA id XR_005039971.1
length 2817
RNA type mRNA
GC content 0.55
exon number 21
gene id LOC110507397
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5874691 ~ 5896127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacaacACACAATTTTGACAACATCCCGCAAAGGCAGAGTGGGCTTCCGGTCTGAAGGAGGTGTGACGGGAAGATATCGGCTGCCATCGCTCAGCCGAACAATTTGGAGAAACAATTTCAAGTGTGTGttggaggtctacaaaaacaGCCACCGTGCCCCGCCGCGCCCCCACACCCAGCGGAGCCGTCATGTGGCAGGAGGCCCGCAAACATGAGCGCAAACTGCGCGGCATGATGGTGGACTACAAACGCCGCGGCGAGCGCCGGCGAGAGTACTACGAGAAGATTAAAAAGGACCCGGCTCAGTTCCTTCAGGTTCACGGCCGGGCCTATAAGATCCATCTGGACTCGGCCGTGGCGCTCGCCGCAGAAAGCCCCATCAACATGATGCCCTGGCAGGGAGACGCCAACAACATGATTGACAGGTTTGACGTGAgggcacacctggacttcatacTCACCTACACCCCTCCGCTCCTCAGCACAGCCACCCCAGAACAGGAGTCGGAGGAGAGGAAGTGCAACTATGAGCGTTACAGAGGCCTAGTGCAGAATGACTTTGCCAGCATCTCTGAGGAGCAGTGTTTGTACCAGATCCAAATGGACGAGCTCTATGGTGGCCTGCAGAGGCCAAATGAGGATGAGAAGAAAAAGCTTGCGAAAGAGAAGGCTACCATTGGCTACACGTATGAGGACAGCACTGTTACGGagcctggagaggaggaagagaaaggggaggaggatgACTCTGAGAACAGCGAATCGGAGGAGGACGAGGGCATCCCAGACATTGACGTGGAGGTGGACGTTGACGAGCTCAACACGGAGCAGGAGTTGGATCTGAACAAGATGGCCAACCCATATGGAATGGCAGAGGGAGATTTTGTCAGGATGCTGAGGAAAGACAAGGATGAGGTGGAGGCCATTAAACACGCCAAGGCTCTGGAGGCAGAGAAGGCCATGTACTCGGGCCGTCGCTCTCGCAGACAGAGGAGGGAGTTCAGAGAGAAGAGACTGAAGGGCAGACAGATCAGCCCACCCAGCTATGCCAGGAGAGACAGCCCAACCTACGATCCCTACAAACGgCCCCAGTCGGAGTCCAGTTCGGAGTCACGGTCCCGCTCCCGTTCCCCAGGCCCAGAGAAGATCACATTCATCACCAGCTTTGGAGGCAGTGACGAGGAGGCTGCCGCGGCAACCCAAGCTCCACCCCCTGTCCACTCCGGCCACACTCCCGCCAACTTGCTGCAACACCCCGCAGGTCATAGCAGGGGCTCCCGCAGACGCCGCTCTTCCTCCagcccttcctcctcttcctcccactctTCCACTCATCGCTCCTCCTCTCGTTCCTCCTCTCACTCACGCCGCGACAGACGCcacggaggagggagggatggacgaCATTCCCGGTCGAGGCGGCGCTCCGACTCACGGTCCCGGGGCAGAGGAGCCAACGGAGGAGGGGGGTCACGGAGGAGATACGACCGGACACAGTCACGCTCCAATGACCGGGACAGGGAGCGAGaacgggacagagacagagacagggacgtGGGTCGTCGCTTCGCAGCACGCAGACGCACACGGTCCAGCTCTAACTCTCGGCAGGGGGACCGTGCCAGGCCCGGGGGGGGTAGACGGACTTCAGGAGGGCATCGGAGGGGGGTCAGCAGCAGCCCTAGCCCCTCCCAGTCCCCCCAGCCCAgctgctccccctccccctcacacaGAGGAGGCCCACCCTCTGCCACTGCTCTCTGTGACAAGTTGAGAAAgcCTGATACTCCGGGTGGTAAAGAGACAGGAGCTGCCAAAGTCACCCAAGATGACCCCGCAGGAGAAGCTGAAGATACGCATGCAGAAGGCCCTCAACAGGCAGTCCAAGGCGGATAAGAAAGCAGCCCAGGCGAAAGTCACTCAGCAGGAAAATAAGCGAGCGGAGCGCGAGGGAGAGCTCAGAGCCATGGCACGCAAGATCCGCATGaaggagCGTGAGcgtcgggagaaagagagggacgagTGGGAGAGACAGTACGGACGACAAAGCCACTCGCCCTCCCCATCTAAATATGGTCGCGACCACAGCTCATCCAGAAGGAGGTCCCGTTCCCGGTCGAGGAGTCCATATTACCGATACTAAACATACCGTTGGGACTCACCAACCCCcacacccctcctcaccctctcctctgccTACTCTTCCAGTgaagagatgagaggagtggGGGACCATGTCCTGAATGgaagagtggtagagagagactgatttagagagatggagaaaggaaaATGGAGGAACTGAATTGGAGGCCGGAGTTTGCTATGAGTGACGGATTTTGTACGTTATTGCTGACAGCTTGACACATTTCAGTATCTCAGTAATTCTGCATACATATTCTCTCCTTTATGATGGCCTTAAGTTGCTTTTTCTCTTCTATCTCTGAGCGCTCTTTCCCCcgtcccttccatctctctctgagaAGGGGGTGTTGGCATCACTGTCTTATCACAGGAATAGGATGTAAAAGAATCGGATTGAAATTTGACCTTCATCTGTGTACATAATTTTCTTTGATTTCAAatgagtgaacatttaatgaaatCCTGAGGGGTTGTAATAGCCCCGTGTGTGAGTATGAAAAATAATTTGTATGCCATGCCCCCCCAACTGCTCACCCTGTGAATTGAGACATGATTGTACTCTTCTGAGGTAACAGATGAagtcttttttttgtttgtttttagtccaaCTATGATAAGATGTCAAACTGGGAAGTCCAAATAAAATGCACAAAAGTATCTGATGTAGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339443 lncRNA upstream 26095 5847852 ~ 5848596 (+) True G2045140
TU2339416 lncRNA upstream 48920 5825536 ~ 5825771 (+) True G2045133
TU2339415 lncRNA upstream 50809 5823682 ~ 5823882 (+) True G2045132
TU2339413 lncRNA upstream 54002 5820288 ~ 5820689 (+) True G2045130
TU2339401 lncRNA upstream 59921 5814296 ~ 5814770 (+) True G2045124
TU2339610 lncRNA downstream 40212 5936339 ~ 5936640 (+) True G2045268
TU2339614 lncRNA downstream 54924 5951051 ~ 5951352 (+) True G2045272
TU2339615 lncRNA downstream 55577 5951704 ~ 5953046 (+) True G2045273
TU2339606 lncRNA downstream 58488 5954615 ~ 5955444 (+) True LOC110507399
TU2339624 lncRNA downstream 111847 6007974 ~ 6011892 (+) True G2045277
XM_036964866.1 mRNA upstream 4505 5822646 ~ 5870186 (+) True LOC110507396
XM_036964877.1 mRNA upstream 73178 5798613 ~ 5801513 (+) True snrpa
XM_021587364.2 mRNA upstream 80253 5769612 ~ 5794438 (+) False LOC110507392
XM_036964868.1 mRNA downstream 1081 5897208 ~ 5910058 (+) False LOC110507398
XM_036964867.1 mRNA downstream 1087 5897214 ~ 5910058 (+) False LOC110507398
XM_036965214.1 mRNA downstream 34641 5930768 ~ 5957003 (+) False LOC110507399
XM_021587376.2 mRNA downstream 41651 5937778 ~ 5950428 (+) False LOC110507399
XM_021587374.2 mRNA downstream 41651 5937778 ~ 5957003 (+) False LOC110507399
TU2337845 other upstream 1181819 4685915 ~ 4692872 (+) False LOC110507374
TU2337846 other upstream 1183564 4685885 ~ 4691127 (+) False LOC110507374
TU2337847 other upstream 1183564 4685915 ~ 4691127 (+) True LOC110507374
TU2337325 other upstream 1468565 4405458 ~ 4406126 (+) True G2043193
TU2334775 other upstream 3035764 2834096 ~ 2838927 (+) True G2040882
TU2339435 other downstream 1390 5897517 ~ 5907239 (+) True LOC110507398
TU2339902 other downstream 598706 6494833 ~ 6495134 (+) True G2045522
TU2340040 other downstream 796417 6692544 ~ 6693044 (+) True G2045655
TU2340054 other downstream 823637 6719764 ~ 6720692 (+) True G2045665
TU2340813 other downstream 1349679 7245806 ~ 7251575 (+) False G2046345

Expression Profile