RNA id: XM_036964868.1


Basic Information

Item Value
RNA id XM_036964868.1
length 4285
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110507398
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5897208 ~ 5910058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtggggaacagaagtcctcacaaggatagtaaaacaatgaACATTAGGACAAGTGGATGCATTTTTCTGGTCCCCCACAAGGAAGTTTATTTTAGGGAAAGGAGGTTATGTTTAGGAATTAGGGAAATGTGATTTTTGAATGGCAATCAATTGTTTGGTCTGTAAAAGGATTGTAAAACAAACTGTCTGTGACATTGTATAGAGGGCGGGTTCGGGTCGGTGTAGTATAGTGGCGGGCGGCGCCTATGCCCCTGCCCCTCCTTTCCTCCGCTGTGGGGCTGGTAGCCTGAACTTGAACACTGGCTGGTGCACAGTTAGTCACTACGACGTCCCGTCGGTGGCATAGAGCTACACAGTCATTTGGTCAAAGCTATTCTTATCAACTTGATACTTTTTAAAATTCGATTCCGATTCGGAGTGTGGATGCACCGGCAGAACGTTGACTGGTGCGATTAAGCAGAATGTCCAGACGCAAACAAGGCAGCCGACCGCAACACCTGAGTGCAATTCAAGATGCCCCTGAGCCCTCGGACACTGCCGCTCCTTCGCCATTAGAGGAGTGGGGCTCCCTTCCCCAGGTCAGGGGTCGTGAGGAGAGTCGTGACCTACTGACCTGTGGGCAGTGCGATCAGGCCTTCCCTCTCGCCCGCATCCTGGCCTTCATCCAGCACAAACAGGGGGGCTGCCGCTCCCGGAATCACGGCCCCAACActcacacccctccctccccagccAACCGGACACAGCAACGCGGTGCTGTCACTCAGGTAGAGGCTGGGTTCGTGGAGCTGAGGAGAGTGACGGACAGGTCCAAAGCGGAGGAGCATAGTGTGAAGGTGGAGCCTAACATAACAGAAGAGCCGTCCTGCTTTACCTGCcagctgtgtgagtgtgtgttgccCTCTGCCTGGGCCCTGCTCCAACACGCCCAGCACACACACTCCTTCAGCATCTACCAGGAGGacggggagaaggaggagaagatgggAAGAGGGGGTCACCAGCACTCCAAACCTGCAGCCACCCTGGATCCCTGTCAACTGAGCCACACCCTGGCCACCGCCTTCCACCCTTCCGCTCTGCGTCTGCCCCACATCTTCCGTCCACGGCAGAACCGCAGGCCAGCTTCTCAGGCCAGCTCCACCCCTTCCTCCAGAGAACGACAGGCCCTCAACTTCTGTCTGAGGGAGCTGGCTGAGGGCGGTAACACCACCGCTGGTGTTCTGGTCCCCTCTCCGTCGCCGTCCCCCCCGGCCGCATCTTCCTTCCCCCAGTGTGGACCCGCCCAGGTGGGGTTTCCCTGTGAGCTGTGTGGCCAGGGCTTCCAGTCCCTCCGCAGCCTGTCAGCCCACCGGAGGACCCACGCATGCGAGCGGCCCTACCACTGTGGCTTGTGTGACCAGGCCTTTGCCCAGAGTGGTCAGCTGGCTCGCCACATGAGGAGTCACCGCAGTGAGACGGGCGTGGGTAGAGGGGGCTACGAGGGAATGGAGGTGGGGCTGGTAGGGGAGGATGAGGGGGGTCggcaggggatgagagagaggtttATCATGCAGGGGGCAGGAGAAGCGGTGTTGAGTGGAgcaccaggagagagggagacctcTGAGGTGGACCTGTCCATGTCCAAGCATCACTCCCCAGACTCTGGACTGATCCTTCTCTCCTCCCAGCCTGGAGGTCCAGACATGAGCCTGCTCAGGCTGTTCCAACCCCAGGGAGAGTTGGCGGACGATGAGGTGGAGGGACAAGAGGAGCCCCAGCACGCGTCCCCCTGCGCCAGCCCCTCAGAGGGGTCACTGGAAAGCGGAGAGACTGGGGGCAGTGGGGAGAGTGGCATTGCCAGCGGAAACTGCACCCCCAAACGGccggagagggaggacagggctCCGGTAGGGGGGGAGTGGGAGAGCGAGCGGGACGGAGAGATGGcggatggagagaaggagtggTTTGCAGGCGGGAGCAGCGAGGTGGTCCAGGAGTGGCAGAGGGAGAgcgaacagagaggaggaggaaacggCGTCATCAGCAGTAACTGTGGTAGCAACGACGGGGGGtcagggaagaagaagaaggaggaggccTGTGAGTACTGTGGGAAACAGTTCCGGAACAGCAGCAACCTGACGGTGCACCGGCGCAGCCACACGGGAGAACGACCCTACCAGTGTGGCCTGTGCAGCTACGCATGCGCCCAGAGCTCCAAGCTCACACGCCACATGAAGACCCACGGTGCCCACGGGGCCCGCGCCCCATTCCTGTGCCAGCTGTGCGGGGTGCCCTTCACTGTGTACGCCACCCTGGAGAAACACCTGAAGAAGGTGCACGGGCTGAGCCATGCCAGCATCGGGACCTACACCCAGGCCAGCGCAGCTGATGTCAACTGGGCCCTTGTCCAAATGGATGACAGGGTGGTCATCAAGATGGAGGACGATGAAGCCACTACGGACCAGAcagaaaacaacatggctgccATGGTGGAGATGGGATTGGAGGCTGAGGAGAACCAGAAAGGGGAGGTGGATGGTACTGTCAGCCCAGCCGTAGTGGAGGATAGTGTGGGTGAGCTTCCTGCTGAAGGCCGTGCGGACGTGGGCTCAGCGTAAACTTCTGGTCCACCTTAGCTGCCATATCACACTGTTGTACACTGACCAAGACATTCAAAAGCACTGGCTTGGACTGTCACTCATTCCAACCACTTTGACCAACATAAATATCCATAGAATTGTAATGAACCTTTCCTAGCACTCAACTGGTAATCAATTCAAACTGGAATCTAGGTACCAACCCTGCTCTCCTCTTAATTCCCTATCTGTGCCATGCTGAGGTACGTCACGTCTTGCCTGAGCTGATAATTAGCATATGCAAACCCGCCTACTTAGACCACAGCACAAAACCCTGACATGCAATGGAAAGGAGGGCGGCAAATAGGACTTGAGAACAGGAAGTCAACCACCACAGTCCACCAGATCACAGGAAGTTGATCACCATGCTCCAGCACAATATAGGAAGTGGACACCAGTGGTCAAATGATTGGTTCACTCAGTCGACGTACTAGTGATGATTACCAATAGGAACTGTCAAATGTAGAAAGCAAAAAAAGGGCTTGTAAttatgatttttattttatatatctaGTGGCATGAGATTACTATGATTAGTGAGGCTTTCATATCCTGTTCTGTTGCTGTGGTGACAACTGGCAGGGTGGTTGTCACACTCTAATTCGTCCACAGACTAGTTGTTTGGACAGAGATGGGGTCAAAGGGGAAACGAACCCAAACCGGTTTCTCTGTATCCTTTTTAGATTTAGCTTTTGACACAACACTTGCCACTTAATGTAAAGTTTACAAGGCTCGCGAGGCCCATTTAAGTTCTGTTGTTCCTCTGTGTGTCTCATCCAATGTGTATACGTCTCATCTGCTGATGTTTTCCGAGCTTAGCTGCTAAGCATAAAGAAACTGCCATTTTGACTACAAATGAAACGGGTGTGGATTTATTTCCTTTTGTACTTCATAATTGGATGATCTTTTTTCTTTCCTTTTTGTTTACGTTTATAAAACGCGGGAAACCCCTTGAAGTTTGCGCATATGCATGTTTTGCTGCCATTTGAAATGGTTTGAATTTGATGGGTGGGAGAGTTTTTTTGTGGGTaacaccgtgtgtgtgtttgtgtgcagagAAGTTGTTTGGTAACACTTGACTTGAACTGTCAGTCAAATGCCTCGCTAACTACAACCGAAACATGACCAGCTGTTTGCTTGGAAACGGAGCCTATGCCCATGACAACGATGCACGCAGCGGCAGGCAAGATAACTGTGGCTAACCTTTTAGCTATAGTGGCTGAGAACATGGTTTGAGTGAAGTGTCACCAACTATTTTgtgactactgactactacttACGTTATCATTATTGATGTCAATATACACTGGCGGCAGGGAACCCTTATTTTTTGGACACTTTGAAAAAAACAATTCTTTGCGTTGTGTATGAAACTAGTGACGGGGTCAAATGTGTACGATTTGATGGACATGAGCGGAGTGTAGTTGTTCAGGGACCCATGTTATGTGCATAGAATGGCACTCGCAGATGTCGCTGCCACTGATATCGTCAATTGACTGTGCTGTATGCCTCAAACTCAACTCAGTTTCCCAGAATTCTTGGTTTTCTCTGTCTGTGCTGACTACAATGAGGCTAACGACACCACTGTCTTTGTAAACTTGACACCATTTTGTCATTGACCTGGTTATGAGGAGTCTCATTAAAGAATTGAGGCaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339443 lncRNA upstream 48612 5847852 ~ 5848596 (+) True G2045140
TU2339416 lncRNA upstream 71437 5825536 ~ 5825771 (+) True G2045133
TU2339415 lncRNA upstream 73326 5823682 ~ 5823882 (+) True G2045132
TU2339413 lncRNA upstream 76519 5820288 ~ 5820689 (+) True G2045130
TU2339401 lncRNA upstream 82438 5814296 ~ 5814770 (+) True G2045124
TU2339610 lncRNA downstream 26281 5936339 ~ 5936640 (+) True G2045268
TU2339614 lncRNA downstream 40993 5951051 ~ 5951352 (+) True G2045272
TU2339615 lncRNA downstream 41646 5951704 ~ 5953046 (+) True G2045273
TU2339606 lncRNA downstream 44557 5954615 ~ 5955444 (+) True LOC110507399
TU2339624 lncRNA downstream 97916 6007974 ~ 6011892 (+) True G2045277
XM_036964870.1 mRNA upstream 1081 5874691 ~ 5896127 (+) False LOC110507397
XM_036964872.1 mRNA upstream 1081 5874691 ~ 5896127 (+) False LOC110507397
XR_005039971.1 mRNA upstream 1081 5874691 ~ 5896127 (+) False LOC110507397
XM_036964871.1 mRNA upstream 1083 5874691 ~ 5896125 (+) False LOC110507397
XM_036964866.1 mRNA upstream 27022 5822646 ~ 5870186 (+) True LOC110507396
XM_036965214.1 mRNA downstream 20710 5930768 ~ 5957003 (+) False LOC110507399
XM_021587376.2 mRNA downstream 27720 5937778 ~ 5950428 (+) False LOC110507399
XM_021587374.2 mRNA downstream 27720 5937778 ~ 5957003 (+) False LOC110507399
XM_021587375.2 mRNA downstream 27720 5937778 ~ 5957003 (+) False LOC110507399
LOC110507400 mRNA downstream 49939 5959997 ~ 5993183 (+) True LOC110507400
TU2339431 other upstream 1095 5891847 ~ 5896113 (+) False LOC110507397
TU2339420 other upstream 1095 5893023 ~ 5896113 (+) True LOC110507397
TU2337845 other upstream 1204336 4685915 ~ 4692872 (+) False LOC110507374
TU2337846 other upstream 1206081 4685885 ~ 4691127 (+) False LOC110507374
TU2337847 other upstream 1206081 4685915 ~ 4691127 (+) True LOC110507374
TU2339902 other downstream 584775 6494833 ~ 6495134 (+) True G2045522
TU2340040 other downstream 782486 6692544 ~ 6693044 (+) True G2045655
TU2340054 other downstream 809706 6719764 ~ 6720692 (+) True G2045665
TU2340813 other downstream 1335748 7245806 ~ 7251575 (+) False G2046345
TU2340814 other downstream 1335748 7245806 ~ 7251575 (+) True G2046345

Expression Profile