RNA id: XM_021587374.2


Basic Information

Item Value
RNA id XM_021587374.2
length 4904
RNA type mRNA
GC content 0.50
exon number 24
gene id LOC110507399
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5930768 ~ 5957003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTGTTTCAGTATGTTGCATTGAATGTGGCTAATAGtatgttgattcgatcacaattgacGTTGATAGAGTTAAATAAATGGGAGCGTTCCAAACTTCCCGGAGGCTCTGCATACCTTGCTGGAATGGTTCGACTAAGGGAGACGCCCGTACGTCTCCATAcgggtgaatgagtgtgtgtgtatttaagaaCTGGGATTGTTGTACAAGTCCCCCTAAAATAAGCATAAACATTTACTATTTTGATCTCAACTTTACCATTGAAAATGGAGACTCGGAGGTTCGCAACTGGTTCCATTGCCAACCCTGTTCAATTTCGGAACCAGCACTATGTAGCTCTCCTAGATGCGTGCGTTAAATCCGGTTCGCTGTTCTCTGACCCAACCTTCACCCCGGACCAGAGCTCCATCGGTATGCCTACCGACCCAGACCCCAAAAAGGAGGTCAAGTGGCTGCGACCCAAGgagaTCAGTTCCAATGCTGTGTTTGTGGAGGACACAACGTGTACCACCGATATCTGCCAGGGCCAgctggGTGACTGTTGGCTTCTggctgccctgtcctgccttacCATGCACCCCAATCTCTTTGTCAAAGTGGTACCACCTAATCAGAGCCTGACAGAATCCTATGCTGGCATCTTCCACTTCATGtTCTGGCAGTATGGTGAGtgggtggaggtggtagtggatGACAGGCTACCTGTACGCGAGGGCCGCCTGCTCTTCAGCTACTCCTGTACCCGCAACGAGTACTGGAGCGCCCTGGTGGAGAAAGCCTATGCCAAGCTGATCGGGTCATATGGGAGTTTGAAGGGGGGTAATATCTCAGAGGCAATGGAGGATTTTACAGGGGGCATAGcctactccctccctgtctcctcccgcGCCCCCAGGGTCATGTGGAAAGCCCTCTCTGCTGCCCTGTCCCGTGGCAGCCTGCTCAGCTGCTTCATACAGGCTAGTAACTATTGTGAGATAGGCACAGTGACTGCAGAGGGACTGGTGAAGGGCCATGCCTATGCCATCACAGACACTGACACGgtgaagaagccggatggtGAGGCCTTGTTGCTGAGGCTGAGGAATCCCTGGGGCTTTGTGGAGTACTCTGGACCCTGGAGTGACAAGAGTAAAGACTGGGATGATGTGGATGCTGCTGAGAAGAAAAGGATTGATCTGAAAAACAGTGAGGACGGAGAGTTCTGGATCAGTGCGGAGGACTTCAACAAGCTGTTTGACACAGTGGAGCTGTGTAGTGTGGACCCTGACCCCATAGTGGAAGAGGACACATCCACTGACCCCGACTCCCCTGCTGACCCCCCCTCTGCCTGGACCCTCAGCTCCCACAAAGGCTCCTGGGTATCGGGCTCCACTGCAGGGGGGAGCTGTAGTTACcctcgATCCTTCTGGAAGAATCCCCAGTTCCAGCTTGTCCTTGCCGAGCATGATGATGATATAGAGATGACCCCGGGGGAGAAGAAGGTGGCAGAGAAGCAGAAGGAGAAGGCAAAGCAGTGCACCGTGCTGGTGGAACTACTGCAGAAAGAccggagaaagaaggagaaaatCAACTTCCTCCACATCGCCTTCCATATCtacagggtTCCTCCAAAGCTCCGGGGCCTGTGTCTGGACCAGAGCTTCTTCTCTTTCAAGCAGCCTGTGGGGAGTTCTGGGGTGTACCAGCCTTTCAGGGCTGTGTGGAGGGAGGTGAGGCTGGACCCGGGACACTACGTGATCCTGGCCTCCACCTGCAGTCCCAACCAGCCCGCGGAATTCTTCCTCCGCGTCTACTCCAAGACTGGCAACAATCTGGGGACCCAAGACTTCACTTGCTCCACTGGCTTCCTCATGGTCATGTCAATGCCACCAGTCTTGCCAGAGGATCGCAAGAGAGTACAGAAGACCTTTGATGAGGTGGCGGGGCCGGATGACAAGCTGAATGCTAAGGagttcatgaagctggttaactCAGttctGGAGAAAGACTACCAGCTGCCACTGGAGACATGCAGACAGCTCATCTTTGGAGAGGAAACTGGGGGGCGTAGCAGTCTGACCCGAGAGCAGACAGAGCCTGTGCTGACCTCTCTTCGCAGTCTGCAGtccatCTTCTTCAAGTTTGATCAGGACTCTTCAGGGACTATGAGCCCCTTTGAGCTTAGTCTGGCCCTCCAGGCTGCTGgtgtgcagtgtgatggccaGGTCATACAGCTGCTGTGGGAGAGGTTTGGCTCTGGGGAACTGCACCTGCCTTTCCATGGCTTTGTGACCTGTGTCTCCAGGCTGCGCAAGCTATTCGccctgtataAATCAGAGAGCAACCCTGAGGTCAAAGACAGAGGAATCAATACTTGGCTGCTCCGACTCCTGACCGTGTGAGCATGCTCTGTAAAGGGGGTTCATGCGTGGGCACTGCAGGGGCATTCTATCTGACCAGGAACATATGATAACATCATGCCTCTGCCGGCGCcctcgtccacacacacacacaggcgcacacgtacaccacacacaaacaaacagcccCTGGCCTTTGTCACCATAAGATACCACGCATATCAGTTAAGTATTTTCAGCAATTGAGTCAAGTATTTTCAGTTCTACAGCCAAGTATTTCTTTAACCTTTCATTATTTGAGTTTTAAATAGTGAAAATGTAGTTGAAGCTCTGTAGTTGAAATGTatccaaaaataaaaaatgttgtaaAAATGAATCCGCTTTGATAATGTAAAATTATTTCTGTGTTTATAAATACAGCCCAGCCTCACATACATGGTGAGTACGGCCTGCCCTGGTGAGGGAGTGAAGGTGATGTCTCAGCCGCGCAGCACACACCGTCTCTATACTTATCATACTGACGCCTCGTACAGCATCAACACGCACTCGCCGCCTCCTCCGCTacttccctcgctccctccctcctttgctcCCTTCCTCATTTGCGccctccctcgcgctctctctagTAACTCCGTCTCACAATctgcctccttctctccctgtgtgCTCTcaaagtcacaaaaacacacacaagcatgtaTGCTCTTGTCTTTTCTCCTGATACTCCAAAAATAGAAGCTTTGCTCAGACACAGCTTCCTGTTCATCTTTAGGGGACTACATACAGGTTGCCCGCGGCAACAGTCCATCCACCTCGGAACAGAAAGGGGGCATAGTAGACAGACGTGTAtgcgactctctctctctgaatagcCCTTATGCACATTCCATGACTGAACGTTTTAAGCACACTTCCTACCGTTGTGGCAATTTCCGGTGGCGCATACTATAGAACGGAAGTCAGTCTAGTTATCGACGATATAACATTACTACCACTATATCTCAGTTTGTTACTATGTGTCTTCTGGACTTGCCTCGTATTAATATTAATGGTGTACATCAAATTGTTAAATCAGCCTCGGAGACTCCAGCTAGCAAGAACGAAAAGGGGTTCAAGATGTATATAGGAAGCTCCATAGACAACTATGAAGATGGAGTTAAAGCACTCTGTACCAGTGAAAGGTCCAAAGCCGCTGCTGTGTTGCAGGAAGTGCTATGTGCAATCAGCTGGTGGCCCTTCTTTACCAGACAGCGCACTACTCTCAACTAAACATTCCAGCTGCACCACCAGTTCACGGCTGCACAGACACAGAACAGCGTTGGCACAAGCCAAGAACAATTAAGTTCTCTACAAAGCACTCAATGGATACAGGCCTGACATGGACCTTCTCCGCGTGCCAACTTTTCTCCACTTACTGCCCCTCTTgtgacaacaatggaaatgtcagCTGACGTGCCCCTGGTTGAGTCTGCCTTTGGGCCAGTGCAAGCTGGCAGTGTGCTGTCCTATCAACTTCCACAGCCAGACCTGTGAAATTGTGAAGATTGCCGATGCCCCTTCTCCACCAATACTTCCATTAGATGGCTACAGGCTTCAGTCTTCCCAGTGTGCTTACGTCCTTAAACATGAGGAGCAGTTCCACCTCAAGGCATTAGAGACAACCTACGAGATGTCACACAAAGTCGAGGTTGCTACAAGGGATCAGAGCAGCAACCCAGAATGGCATCAGCTCAGGACAATGAGAATAACATCCTCTCGTTTGAGAGGTTTGCCATGTCCGGGGAGAGACCTCAGCTGACCACCTAGCTGAGCGGATGTTCAAGGGATCTGGTATGCAGACCATGGAGATGAAGAGGGGGCTCTGGTCCATGGAGCCAGTGGCTGTACAGGAGTACTGCACACTGAAGAATGTTAACTTCTTTCCATGTGGCTTCGTAGTGTACCAAGATGCTCCGTGGTTAGGATCCTCTCCAGATGGAATCATATTTGATCCCAGTGTGAGACCACACTTTGGACTCTTAGAGGTCAAGTGCCCAAATGTACCAAGTTATGTTGACTGCCCTTACCTGAAGATACAGAATAGGGAGCTGAAGTTGAAGAGATCTCATGCTTACTACTGGCAGGTGCAAGGTCAAATCCTTCTCACAGGTTGTAGCTGGTGTGGCTTTGTCATCTGTGCACAGGAGGACATCCTAGTTGAAAGGATATATAAAGATCTACAGGTTTCAAAACCTATAAGAGGGAAGGTTGACCACTTATTTTTACCACTACCTGCAGAAGTGTCTTATCTCGcacctgaatggatcccctgcatGGGTGCCAAGTTTAGTGGTATCATGAAAAAATAAGTATTGATGTTCTGGTGAAGAAAACTACAGTATAAtagatgttaaaaaaaaaaaaaaaagtatttcagcAAATTTTCAACAGTTCAGTTAATCAATTACACATCTCTAACATTGTATTCATtctggctattctgtgttgactTGATTTCTTTCCCCCACCCCTGTTACTCATTGCCTAATTAAAGCCAATACAAGCTCTacacaaactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339610 lncRNA upstream 1138 5936339 ~ 5936640 (+) True G2045268
TU2339443 lncRNA upstream 89182 5847852 ~ 5848596 (+) True G2045140
TU2339416 lncRNA upstream 112007 5825536 ~ 5825771 (+) True G2045133
TU2339415 lncRNA upstream 113896 5823682 ~ 5823882 (+) True G2045132
TU2339413 lncRNA upstream 117089 5820288 ~ 5820689 (+) True G2045130
TU2339624 lncRNA downstream 50971 6007974 ~ 6011892 (+) True G2045277
TU2339758 lncRNA downstream 268185 6225188 ~ 6226090 (+) True G2045391
TU2339761 lncRNA downstream 283519 6240522 ~ 6246880 (+) True LOC110507411
TU2339827 lncRNA downstream 392843 6349846 ~ 6350342 (+) True G2045453
TU2339883 lncRNA downstream 495029 6452032 ~ 6452234 (+) True G2045506
XM_036964868.1 mRNA upstream 27720 5897208 ~ 5910058 (+) False LOC110507398
XM_036964867.1 mRNA upstream 27720 5897214 ~ 5910058 (+) False LOC110507398
XM_036964870.1 mRNA upstream 41651 5874691 ~ 5896127 (+) False LOC110507397
LOC110507400 mRNA downstream 2994 5959997 ~ 5993183 (+) True LOC110507400
XM_021587378.2 mRNA downstream 45712 6002715 ~ 6007384 (+) True LOC110507403
XM_036964888.1 mRNA downstream 55398 6012401 ~ 6021237 (+) False LOC110507404
XM_036964890.1 mRNA downstream 55400 6012403 ~ 6021237 (+) False LOC110507404
XM_021587386.2 mRNA downstream 55402 6012405 ~ 6021237 (+) False LOC110507404
TU2339435 other upstream 30539 5897517 ~ 5907239 (+) True LOC110507398
TU2339431 other upstream 41665 5891847 ~ 5896113 (+) False LOC110507397
TU2339420 other upstream 41665 5893023 ~ 5896113 (+) True LOC110507397
TU2337845 other upstream 1244906 4685915 ~ 4692872 (+) False LOC110507374
TU2339902 other downstream 537830 6494833 ~ 6495134 (+) True G2045522
TU2340040 other downstream 735541 6692544 ~ 6693044 (+) True G2045655
TU2340054 other downstream 762761 6719764 ~ 6720692 (+) True G2045665
TU2340813 other downstream 1288803 7245806 ~ 7251575 (+) False G2046345
TU2340814 other downstream 1288803 7245806 ~ 7251575 (+) True G2046345

Expression Profile