RNA id: XR_005039973.1


Basic Information

Item Value
RNA id XR_005039973.1
length 3134
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110507404
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6012401 ~ 6021237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCCCAGATAATGTAGAAGATCGCTTAAAAAGACTCCACAAATATTTAATTGTTATCAATTATTCTTAGAATAGTGATGAAGGATATTTATTTTTCGGAATGTAGAGAAACTGGTGTCTGTGTCTAGCTAGCATAGTGTGTAGGTCTCAAGTGCCGACTAGAATGTAGTAGCTAACAGccgtttagctagctagataacgttagctattCAAAATTGCTCGTGCATCATTCTTGTTTGTGGTTACATTTTGTTTTTACCACAAACAAAAGTGGGACTGATGACTAGTTTATCATTGGCACCACCGAGTTGACTGATAGCTAGATTGACTTCAACTTCGTACCTAACATTTTCATTCACATGAACGTTAGCTACTGTtaaattggctagctagcaagtcagctagtagctagttagctagtccACAACTACACATGTAGCGTTCTAACATTagcgtggtggaggggaggtAGATCACTAGTCTAACAACTAACGTTACCGAAAGGTCGCCTGGTTTCATTATCATACGTTTCGTGCAGGCCATTGTGAAATGAATCCTAGACAGAACGGTTGGTTAATTAGTTTAGTCAGCAAGTTATGTTATATGTTAGCGACGAGTAGCCCACTCACTGCAACCAAGGCCCTTTAGCTCATGTTGGGACTGACTTTAGCTGCCTGTTATCTCCCTTTAGTTAGCTAACCAGAGACCACTCAGTTTAATTAAACTGTTGTTTTGCCTGATACTGTAAAATTAAGTCATTTACACCTCACGGATCCGCTTTGACGGCAGCATTATCGTTCTGGTGGAAACACTGGCAATATCAAATGTGTCTATGAACCCCAGTGGAATTTCGCTGTCACCACAAGGCGATCCATCATGGTTTTATAAATAACACCTAGCTGGCTGGTCGAGCATGTGCTGTCTGACTTCAGCATGCTGTCCTGTCACCAGGGTTTCCACTTGGCATGTTCCATTGGAGCTCACTGCTATATGGATATAGCCTAATCAGATGGCTTTGAATTTTAACTTTGAAGCCACCTCGGAGTGGATCCAGTTCTTCAAAGATGCTGGGATACCTGCTGGTCTGGCTGTCAACTATGCCGTGTCTTTTGTGGACAACAGGGTCCAGAAGAACATGCTGATGGACCTCAGTAAGGAGATCATGATGGACCTGGGCATCACTGTCATCGGTGACATTATTGCCATCCTCAAACACGCCAAACAGGTCTACCGACAGCAGTTACTCCAATActgcctctctcccacctccccttCCCGTCTCCAGGACATGTGCAAAATGGCCACACAGGCCATAACCTCAGGACAGTCCAGCATTCAGACCGAACTCCGAAGAACTGCCAACACCCCCGCCACACGTATGATTGCCAACGCCTTGAGCCGCGACTCACCGCCAAACACACCAGCCCATCACCCTGACAACCGGGCAATCTCTGTGACAGTGTCCAACAAACAGGCCAAAGGTGGCAAAGCAGTGCTGAGCCGGCCTGCTGACGAGGGGAACGGTCTGCCGGTGAAGCGTCGGCGCGTGACTGCAGAGATGGAAGGCAAGTACATCATCAACATGCCCAAAGGCACCACGGCACGCACCGCCCGAATCCTGGCCCAGCAGGCCAAGAAAGGGAGCAAGCGGATGTCTGTGTTTGAGCGACTGGGAGCCGAGTCCAAGGCAGATACCACCACGGGCAGCAGCAAGGGCATGGCCTCTCTGCTCTCATGGCCCGTCTCTCTCCAGGCCACGGGTGTGTTCAGTCGTCTGGGCCGAGCAGATGGCGCGGAGGAGGAGCAGGGAACTGCAGGAAGGGTTGATGTAGAcggagtggaagaggaggaggaggaggatgatagTGACGGAGAGGGTTCGGTCCTACAGTACGCTGGCGTCCTCAAGCGACTCCCACCCTCCCAGAAGAAAGAGCCTGTGGCCCCCAAGCTGGCCCCCACCACCCTCCGCCGCCTGGGAGGGAAATTCAAACTCCCACCCACtgattctccctcctcctcttcctcccccgaTGGCCTCCCCCCTGCCAAGCTCAGCGTGCTTCAGAGACTGGGCAAGCCCCCTGCCTCCCCACCGCCTGCCGACACCCAGGACAGCCGGGTGACCAGCACCAGAAATAAGGCCCGGCCAGGCCTGGCCCTGGCTAGCCCCAAGGTCAGCAGCAGCACCagggctggaggaggagagagtttTGGGGCTCAGATGGACGTAGGGTCAGTCAATGTCTTTAAGAGACTAGGCAGCAGGAGGACCTAACACATATCAGGTCATGTCTAGACTTAAACCGTACCTTTTTATTATTTGGTATTATTCCCCTTACGTGTTGGAGTCATGAAAATCATTGTGTTATTATATCCAACCTTAGAGGTTTGAGACGACCACTGCAATCGGCCTGGGTGAATGAACATTTTGGATGTTTCATCAGGTTTTGAAAGACTGGACAGCAGCAACTGGCAAACAGCACATCAATGAACCTCTCAACCCACAAGCAAGAGCATCTCATCACCTCAttttatatgaactgtatctGTAGAAATGTGTAAATGCATATTGCTTGATGATGCCTACCTTTTTTGAAGGCTCCACCGCCACATTGATCCTCTGGTTGTGTACAGCCATCTGCTTGAAAGCCAAGAGATTCTGAGTTGTCTGTTCACGGAAAAGGAAGTTACCCACCCTTGACCTGGAAGTAGATTTTATTGTGAGTCCGGGGCTTATTCAGTACGTAGAAATGTAACGGATAGAGCTCACATGATGCTTTAGTTGACTAACAAGAGAAGCATGTTAGTTCTGCACCATACCCTTTCTATCTAAATGTGTAATGTGCTTTCCTCTATAAGCCCCTGGTTTGTCATAATTCAGCATGGTATAGGAACTGATATGTAATGTCCCCTTGATATTGATGCAATACTTAGCAGGTGTTCACCCAACTCAATGTCATTTTGAGAcggtcttttatttattttttattaaacttcACACCGGAACTTTgctacactgtatatatatatatattttgaaaatcatgacaaaaaaaacaaacatccaAGGTTTTATTGTTTTTAAGATGTAATGGAACAAGGCACCCTGCcttcagaaagtgatcttgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339624 lncRNA upstream 638 6007974 ~ 6011892 (+) True G2045277
TU2339606 lncRNA upstream 57086 5954615 ~ 5955444 (+) True LOC110507399
TU2339615 lncRNA upstream 59484 5951704 ~ 5953046 (+) True G2045273
TU2339614 lncRNA upstream 61178 5951051 ~ 5951352 (+) True G2045272
TU2339610 lncRNA upstream 75890 5936339 ~ 5936640 (+) True G2045268
TU2339758 lncRNA downstream 203951 6225188 ~ 6226090 (+) True G2045391
TU2339761 lncRNA downstream 219285 6240522 ~ 6246880 (+) True LOC110507411
TU2339827 lncRNA downstream 328609 6349846 ~ 6350342 (+) True G2045453
TU2339883 lncRNA downstream 430795 6452032 ~ 6452234 (+) True G2045506
TU2339900 lncRNA downstream 470857 6492094 ~ 6492423 (+) True G2045520
XM_021587378.2 mRNA upstream 5146 6002715 ~ 6007384 (+) True LOC110507403
LOC110507400 mRNA upstream 19347 5959997 ~ 5993183 (+) True LOC110507400
XM_021587374.2 mRNA upstream 55527 5937778 ~ 5957003 (+) False LOC110507399
XM_021587375.2 mRNA upstream 55527 5937778 ~ 5957003 (+) False LOC110507399
XM_021587376.2 mRNA upstream 62102 5937778 ~ 5950428 (+) False LOC110507399
XM_036965264.1 mRNA downstream 6926 6028163 ~ 6065070 (+) True LOC110507405
XM_021587390.2 mRNA downstream 91283 6112520 ~ 6207567 (+) False LOC110507407
XM_036964759.1 mRNA downstream 91283 6112520 ~ 6207567 (+) False LOC110507407
XM_036964760.1 mRNA downstream 91283 6112520 ~ 6207567 (+) True LOC110507407
XM_021587392.2 mRNA downstream 196702 6217939 ~ 6223022 (+) False qpctla
TU2339435 other upstream 105291 5897517 ~ 5907239 (+) True LOC110507398
TU2339431 other upstream 116417 5891847 ~ 5896113 (+) False LOC110507397
TU2339420 other upstream 116417 5893023 ~ 5896113 (+) True LOC110507397
TU2337845 other upstream 1319658 4685915 ~ 4692872 (+) False LOC110507374
TU2339902 other downstream 473596 6494833 ~ 6495134 (+) True G2045522
TU2340040 other downstream 671307 6692544 ~ 6693044 (+) True G2045655
TU2340054 other downstream 698527 6719764 ~ 6720692 (+) True G2045665
TU2340813 other downstream 1224569 7245806 ~ 7251575 (+) False G2046345
TU2340814 other downstream 1224569 7245806 ~ 7251575 (+) True G2046345

Expression Profile