RNA id: XM_036965171.1


Basic Information

Item Value
RNA id XM_036965171.1
length 7846
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110507406
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6068424 ~ 6105009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTATTTGGACACAAAGTCAGCCTAGATACTGACAGCTGCATCTAGAAATGGCACGTCTTTTGGAGAAAAAAGCTATTTGATTGTGAAGGACAACTGGCCACCCGACTGACTCAGATGAGTAAGGACTCCAAGACTATTCATTTTGTGGAATTGGATTATGGAATCTGATGGTGGATATTTGGATGCGATCACACGCCCATGCGACAATGTCAATGGATGTTGTGATGCACGGTGTCCAGGCTTTTTTCCCGTAAATATTTGAATATTTAATATTTGGTTTATTTGAACCAGAAGACAAGATGCAATATACACATAAAGACTGGATTCTAATTATATTTGGCACTAAAAGGGAGTATTAGGCTTTTATTAGGCctgttacattattattattattattataaatgcCTCGAAGATGGTGCATCTGTCTATCATAGCCAAAGAAAACACGTTACCGTAGAGGATTAATCGCCTTATTTGAATCACGTCAACAGATACACAACTATTTGCAATTGGAATTACAGCGTGATGCCTTCACAAAACCCATAATTTATTGTTATGGTAGGCTATTTCGTTCTTTAACCTAGCGTGTGAAGGTGTCGAGAAGCACTGAAACATATTCCGTAGAGCCAGCAGGTGCGGGATCTTTGATCACAAATAACTGAAATGTGCAACATCGTATCCATATAAGTAGACAAGGCTATTGCTTATGGTTTTCAAATGTATCAGATGTTTTGAATGAGCATCGTCTTGTAGCCTACAAAATAAAGGTTAGATAATAATGGCAAAAACAGACCGTGCTGTACCAatggtgtctgtgtctctggaCTCTCTGCGCGTTCGTGTCGGCTCAGTGTATGGCGTTTATTGAAACATTACCGTGCGCAGAATTTAGGCCGGACAATGTAACAAGACGAACGATCAATCATTGATGTGCGCTGACTACAAAGATGCTAAATGTACAGGCACTCAATTGTCTTTGCCTGACTGCTGTCCGCCGTAATTCCCCGTCTAAAAATGGACGAGTACGCTATTTAAGGACATTAAACTGGCTTATACGTTTATCGGTGTAAGTCTACGTGATCTAGAAGAGGCAGCATCAAAGTAGGGACATATTTCAATCGATATTTCAACAAAATGCGAGGTCAAGACAAATTGCTGTAATTCATCGCTGTCAAAAAGCCAATGACCATGTAATAACGAGATGTCAGACAAGCGATATTCTTCTGCTCTGTGCTTGTTTGGAAACAACAACGATCCTTGCTCAGATGATGTTAAACTATACAGATGACACTATTTAGAATCAGAATGTTTTGTTACATGTGGTGCAAATTGATCCACAAATAGCCTATTCAGATGTGCGATCTCCTTCAGTTGTCGTGTAGCTTCCTCGCTGTCGTTGGCCTCTTATAATCTTCAAGGAGAGGAGCTAGCCTCTTCAAATCGCTGAGTCAGGATCTGTCCTCAATGAGGCGACATGAAGTGCAGCGTTGGCTATGTCTTGTTACTCATTAGGGCAAAAATGTAAGGAACTAAAAATGGTAAGACGTCATAATAAACGCAACTGTTGTGGCCCACTCAGACCATCCGGCGCTTGCTGAATCTTGCGAGGGAGACAGTCAATACAGTCAGTAGTCTAAATGAAATAGCAATAGATGCTCAGAGATACCCTAAGTTGTAAAAGCAGTGTGGGACGTTACAGAGACCCGTGTTCAGATCCCGACCATGCTCTCCCGAGCAGCGCAAAGCTGTACCACCCACAAGGACCTCATCTCACAGTAATGAAGAGGGTCAACTTTGGGGTTTTCCCAGGCCAGCCTTGACTCTCTGGTAGCTTTCTAGACCATACCATTGAAGAATAAACAGTAGCCTCTCTCAGGGATGACCATGGTTCTGCCCCGATTGCTTTTTTTCCCTTTAGAAACACACCCCAGAGAGAACTTGTTGTAGAAATACATGTTAAAGAAATACATGTTAAATACACACTGCATTATACATGGTAGTACAGACTGCTACACACACATGATTGGTGACAGGAACTGGAACTACCCCAGTAAACGGGGACAGTGATGGGACAGTGGAGCTTTGGCCTGCCTGTCCActgatctgtctctcctctggttAAGGAGGCCTGGATTCGGCTGATGGGCCCTGCATGGATTTTGTGCGTGAGTTGACAGAGGGCAGGCCCACACCGCTGACCAGCAGCCGAGCAGCCATGGACCCATATGCCAGAGCGAGCAGCACAGCAGCCCCACTGCCCTGCGCCAGCTGTGGGGGCTGCTGCGACCCTCCTCCCCCTGGCCTCATGCTCGTTGGTCCCCTTGGCCCCCCTTAtggcccccctctctcctccatgccCCCACATATGACCCCTGCTCCCCCGGTGTGTGCTGCTACAGCTGTCCAGGCTGAGAATGGCAGCAGCTGGAACTCCTCCTCTGGTTCTTCAGACTCCCACCCTGGCCACCAGGGCGGCTCTACCACCTCCAACCCCTACTGGATGGCCGTGTTTGACTACGAGGCCACGGCAGACGAGGAGCTGACCCTGCGGCGCGGGGACCTCCTGGAGGTCCTCTCCAAGGACTCCAAAGTGTCCGGGGACGAGGGCTGGTGGACGGGCAAGATCCAGGACAAGGTGGGCATCTTCCCATGCAACTACGTTACTCGGAGGGACGCCGGCAGCTACCCGCAGCTAACCCCAGGAGGGCTGGTGGCGGGTGGGGTGCCTGAGGGGTGCCCCCTGGAGATCGACTTCACGGAGCTGGTGCTGGAGGAGGTGATTGGGGCAGGGGGGTTTGGGAAGGTGTATAGGGGGATGTGGCAAGGGGAGGAGGTGGCAGTTAAAGCTGCCAGGCAGGACCCGGACGAGGACATCAGCGCCACAGCTGAAAGCGTACGACAAGAGGCCAGGCTTTTCTGGATGCTCAGACACCCCAACATCATCAACCTGATAGGGGTGTGCCTACGAGAGCCCAACCTCTGCCTGGTGATGGAGTACGCCCGCGGGGGGGCCCTGAACAGAGCCCTAGCTGGGAAAAAGGTACCCCCCAGGGTGCTGGTGAACTGGGCCGTGCAGATCGCCACAGGGATGGACTACCTGCACAATCAGACCTTTGTACCGGTTATACACAGAGACCTCAAGTCTAGCAATATCCTGATCCTGGAGCCCATTGAGAGGGAGGATCTGGGTGGCAGGACCCTGAAGATCACAGATTTTGGCCTGGCACGGGAGTGGCACCAGACCACCAAGATGAGCGCGGCAGGCACCTATGCCTGGATGGCCCCCGAGGTCATCAAACTCTCCCTGTTCTCCAAGAGCAGCGACGTCTGGAGtttcGGGGTGTTGCTATGGGAACTGCTGACAGGAGAGGTTCCGTACCGTGAGATAGATGCGCTGGCCGTGGCGTACGGAGTGGCCATGAACAAACTGACCCTGCCCGTTCCGTCCACCTGTCCCGAGCCCTTCGCACTCCTGCTGGCAGAGTGCTGGAGCCCGAACCCCCACAGTCGCCCGTCCTTCACTAATATCCTCATGCGACTGCTGGCCATCGAACAGTCGGCCATGTTTCAGATGCCCCTGGAGTCCTTCCACTCTCTGCAGGAGGACTGGAGGCTGGAGATCCAGCAGATGTTTGACGAGCTCAGGGCCAAGGAGAAGGAGTTGCGTTCCTGGGAGGAGGCGTTGGCTCGTGCGGCCGAGGAGCagagggagcaggaggagcagctgaagaggagagagcaggagctggctgagagagagattgatattGTGGAGCGTGAactcaacatcatcatccaccaGATGTACCAGGAGAAGCCCAGGGTCAAGAAGCGCAAGGGCCACTTCAAAAAGAGCAGACTACTCAAACTGGGCCGAGACAGCAACAGCATCAGTCTGCCCTCTGGTTTCGAGCATAAGATCACAGTGCAGGCGTCTCCGAGCGTGGATAAGAGGAAGCCCCAGGGCAGTGAGAGCACCACACCTCCAGCCAGCCCAGGGGTCATACCCCGCCTCAGGGCCATACGACTGACGCCCAGCGATGGCAATAAGACATGGGGCCGCAGTGCCGTGTGTAAGAAGGAGGACCTGGCAGCTAGCAAAAAGAAGGGACGCACCTGGGGCCCCAGCTCCaccctccagagagagagactgggcggaGAGGACAGGTTGAAGTCGCTAGGCGACGGATGCAAGGTGTGGTCCTCTAGTGCCCCGAATCTGGGCAAGTCTCCAAAACACGCCCCGATGACCGCCGGCTTCTCCAGCCTCAATGAAATGGaggaGCACTGTGAGTTGGAGGAGTCGCCCGGGTCTCTGATGCCCCCAGAGACCAGCAGTAACGGGTCTGTGGAGGAGGGAGGCCCCCCGTGTGGCGGGCTGGGACCCGGGCTGGGGCCTGCTGGGTTAGGGAGCGGGATGGGTTACCAGGACTCTCTGCGGCGCTGCAGCCAGAGGAAGAAGAGCGACCTGCTGCTACTGGGCTGTGCCTCAATACTGGCCTCTGTAGGTCTGGGGCTGGACCTGCTACAGATGGGGAGAATACAgGTCCAACAGGACGAGCAGGACCTTAGAGAGGAGCAGCGCAAGAAAAAGGACAGCATTTTCCAGCGAACGGGTCGCTTCCGTCGCAGCACCTCTCCCCCGAGCCGCGCCCTGTCCCTCTCGCTGTCCCGCCGCCGCGACTCTACTCTCCCCTGCACGGACCCCTCTCCCTCcgtcaccctcctctccctctcctccctctcagacTGCAACTCCACCAAATCCCTCCTTCCCTCGGACCTTGAGGACTTGGCGTTGACCCCCGGAGTGGGCGCCTCCCTCCCCATGGCGACCCCTGTCCCCGCCCTTAACCCCCTCCTGGATCTGAGGGCAGAGAGCTTCAAGAGGGAGCCCAACCAGTCCCTCACACCCACCCACGTGTCTGCAACCATGAACAGGGGGCACAGACGCACCCCCTCTGATGGGGCGATACGCCCCCGCGCCCAAACCCTAGGGCACCGCAGGACCCCCTCGGACGGCAGCATGCCCATGCCGCCTCCACCAGGGCCCCGCATCCTCCCCCTACATGCAGgttACAGGGAGACCCTAGATATCCCCCGTCTCCCTGACCCTTCCAGCCTCTTCCCAAGGGTCCTCCGCCGCAAGGCCCCTGCTCCGCCTGTCCCTGTCCCGGTCCTGGAGCCCCTGACCATCATCAGTCCCTTGGAGAGGCCCAAGACCTTGGAGTTCGCCCCCCGGCCTCGGCCCACACCAGCCAGGGTGCGACCGGACCCATGGAAGCTGGGTTCCCTGTCCAGAACCCTGAGCTCGTCCCCGGGCAGCAGCTGTGACAGTCCCCTGGGCTCTGGGGACAGCAGTGCCAGCACCGGCGCTGCCAGGCCCAACCTCATGGACATGGACGTGGATGGACAGGATCTGGACGGCACCGTGCCCCTGTGTGAACAGCACCAGGCTGCACAGCTCTGTGGACAGAACTACGGCTAAGTCACACATTACTCTATATGGGCAACACTGCTCCTAGTGCACACTTCAAAGACTCCTAGTGTGCACACTTTATTCCTGGTACCCAATCCCTTTGCGAACAGTACTTCTACTAGTGTCCACTCTGAAGCCCACTTGTGCGGGCTGTACCTCTCTCCTGGTGGTCACTCCTAAGCCTTGTGCCCCCTAGTCTCATAGTGCCCAGCACCCGGGACAGCACACGTCTTAGTGTCCCTTCCAAAGCCGCCCAGTGTTGGACAACATTCCTCTAAGGGACCACTCCGCAACCCCTAGAGTCCAAACCTTTAGTGCCCTAGTGACCAGTGTGCCCTGCTAACCTTCCGCATATTACCTGTCCTCTAAAAGGAAGGAACGTGTAAGCCATTCCACTTCCAGACAGACACTTCCAAGTGCTCATCCCGATTGACATGTGCTGCAGTAGGACTCGTTCTGCTAAACCACCCCAttgactctctgcctctctctacacAGGTGTCGTGTCTGTCTCTGCTCGCTCCTTCCCCAAAGACTTGGGCTGAAGCTTTGCCAGCCGTAGACACATTCACATCTCAACAGGGTTGGAATTATTCTCTTGGGAGTGCCCTtgaagtgtccatgttaatagtTGTTTTGTGGGGGTGCCCTGATTTGTTATGAGAGCACCTCTGGGTGTCCCATCATGTGGGCCCTGCTGCCCCTCCTTCATATTTACATGTAGTCATGGTAGGTAGACGCTCAAATCCTGAGGGACTTCCAAATCAGTGCGTAAGTTGCCCTCTTATTGTGCATCACCTTCTATAGAACTCATTTCCACCTCCCTCACCTCCACATAGCATCTTCCTGTATAGGGAtggtctctgtcctccccctctcccaaaGACTGCAAAAGGAACAGGGAAGCCATTTTAAGCTCCACAGCACAATTGACAGGACTTTATTTCCTCAGCTCTGTACAGCAAATTCATTTTATTTTTCTCAATGCTTGAACCATTCCAGCCATAACCTGTTTAGCACAGCATTTTCTATTGGTTTGACgaattgtgtgtctgtgtgggtgtacactgtgtgtctgtgtgggtgcgCACGTGCGCACCCATGTGTGCTTGTGTTTTGGTACCGCATGTTATTTTGTGTGAAGGATGTACTGTAGAACTAGCAAATCTGTTGTGAGGGAGCCGAAACAGGATGCTTTTCTCCCTCATTCTTTACCTTATGTCCTCATAGGGTTGCAAAATGTCCAATATTTCTTCCCCAAAATCCCCTGGTTtaccagaaatcctggttgaaagATTCCTGGAAGAAGCAGGAAATACGGGAATTGTTGAACCactatttctggaaaaccagggaatttaggGAAAGTGTGAAACTCATAAGCTGGAGTTTCTCAGCAAAcgtcctctctctcaccttcatCACTGCTCTGTAAAGAGCCCCTTATACACTCGGTTATATGGACAGTTCATTTTTAACAAAAGTCCTCTGAGAGCAGAGGAGGACCATGGGAAATGAGGGTTAATCCACTTGCAATAAATGGTTAATGAATACTACCTGTtttctacaacaacaaaaaacgaatTCCCACATTCCGTACCCCTGACTTCCTTTTCCTCACCTACTGGATAGTGATACAGCATCACTGAAGGGAAAAAAGGTCCCAATCTTTGGTTAAAGAGCCATGATATTGACATGTCCGTGTCACAAGAGTACAGACTGTGAAGGACTTGACACAAGGTGCTTGGGATGTGGACAGCGAATCGAGAGAACTCTGGATTCTCTCGCAGGCCCATGAGTGATCCCGTACTGTCTGGTTGCTGAAAGACGATGAAGAATACCACTTTTTAATGGCACAGCTAGTCAAGGCTACATACAAGTATTTACTTGGCTATGTGtatatgggagtgtgtgtgtgtgtgtgcgtgtgtgtgtgtatttagtgTTATTATTTGTATGGGATGTATTTGTATgggatgatgtcaagcaaaactCATCCTTATTCTCCTTGTGTGGTTAAGAACGCTCAGAGTATTTATTAAAATGATTGTTATAATTGAAATAATGATTCATTATTGTCATTATGATTCTCTGTcccggaatatatatatatatatatatatttattaatataACACAGACCAACCAAGGAAAACCAAGCAAACTACAGGCTGACGTTCATGTATTGTAGAGTATGGATGGGAGGTTGTCTTCGACCTGTCTCAATCCGTGACGTTCTGGGATACATGACGAAAGAGTGATGTGTTGTTGACTGTTGAGGCTGCGGTGAGGAATGATTGAATGAATTACGTAATAAAGAAGGAAGAGAGGCGCTTGCTGTGTCTCTGCTCTTCCTGTCACTCGC

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0005524 ATP binding molecular_function
GO:0004709 MAP kinase kinase kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K04418 MAP3K10, MLK2; mitogen-activated protein kinase kinase kinase 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340106 lncRNA downstream 1896 6062148 ~ 6066528 (-) True G2045715
TU2340116 lncRNA downstream 106436 5961458 ~ 5961988 (-) True G2045725
TU2340114 lncRNA downstream 114426 5953685 ~ 5953998 (-) True G2045723
TU2340110 lncRNA downstream 118607 5949564 ~ 5949817 (-) True G2045719
TU2340109 lncRNA downstream 119178 5949012 ~ 5949246 (-) True G2045718
TU2340275 lncRNA upstream 120178 6225187 ~ 6225889 (-) True G2045869
TU2340288 lncRNA upstream 139996 6245005 ~ 6246876 (-) True G2045879
TU2340287 lncRNA upstream 158148 6263157 ~ 6265208 (-) True G2045878
TU2340311 lncRNA upstream 226611 6331620 ~ 6334226 (-) True LOC110507423
TU2340421 lncRNA upstream 391251 6496260 ~ 6496468 (-) True G2046000
XM_021587366.2 mRNA downstream 269932 5795135 ~ 5798492 (-) False c27h19orf54
XM_021587367.2 mRNA downstream 269932 5795135 ~ 5798492 (-) True c27h19orf54
LOC118944669 mRNA downstream 301592 5759611 ~ 5766832 (-) True LOC118944669
XM_021587362.2 mRNA downstream 334059 5720390 ~ 5734365 (-) True LOC110507390
XM_021587361.2 mRNA downstream 358335 5679726 ~ 5710089 (-) True LOC110507389
LOC110507409 mRNA upstream 117918 6222927 ~ 6224524 (-) True LOC110507409
XM_021587394.2 mRNA upstream 123104 6228113 ~ 6235871 (-) False LOC110507410
XR_002471123.2 mRNA upstream 226268 6331277 ~ 6334270 (-) False LOC110507423
XR_002471124.2 mRNA upstream 226268 6331277 ~ 6334270 (-) False LOC110507423
XR_005039967.1 mRNA upstream 226268 6331277 ~ 6334277 (-) False LOC110507423
TU2339541 other downstream 198285 5868575 ~ 5870139 (-) False G2045223
TU2339133 other downstream 526791 5541027 ~ 5541633 (-) False kmt2a
TU2337664 other downstream 1654001 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 1688995 4378934 ~ 4379429 (-) True G2043483
TU2337606 other downstream 1720015 4343599 ~ 4348409 (-) True G2043460
TU2340276 other upstream 127606 6232615 ~ 6235522 (-) True LOC110507410
TU2340414 other upstream 384713 6489722 ~ 6491119 (-) True LOC110507421
TU2340423 other upstream 397406 6502415 ~ 6505948 (-) False LOC110507418
TU2340424 other upstream 397406 6502415 ~ 6507581 (-) True LOC110507418
TU2341171 other upstream 887374 6992383 ~ 7028235 (-) True LOC110507058

Expression Profile