RNA id: XM_021587392.2


Basic Information

Item Value
RNA id XM_021587392.2
length 2945
RNA type mRNA
GC content 0.48
exon number 7
gene id qpctla
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6217939 ~ 6223022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCACTGTCAACGAAAACCCGGAAATCAGGCACCAAAAAAAGCAAGTTGTGTTGCGTTATCAGTGGATTCGATTACTTCAGTTGGGTGAGAAGCTACAGAACCACGTTAGTTACAAACCACGTTAGTTGCTGCATCTACCTATTGAAAATAAAAGCCGAAATCAGGTGTAAGACATTTGAGGACAACGGATTTCTAGATAAGGAAGAGTAGCCTAACCATCGATAGATTCATGATATCGATAAATGTTCAACTCCAATGAAGCAAGCCTAAGGATGACACTAGACTGATCGGATACCGAGGATAGATCATAACAGGCCTCATTGAAAGATGGGTTTGGCATGTAGAAGTACATGTTACCATGAAGGAGTAGAGTATAATTTGTATAAATGCCAAGGGGGGCTTAGGGTAGCCTAGATACTATTATTTAGGAGTCGAGGTAGGGCGTTGCAAATACAAGCTATAACAATACTATTATAAAATAAATGAGCAACGTCTGGTGCAATACTGCGAAAACTTCCAAATAAGACGCTAAGCTGAATTGAGGACTCTATCTAACCACATAATAGGTGGTTTCACTGTAAGTTCAGTTCGGGGAATGACACGTAGCTGTAGATCGGGCCAACAGGGACCGAGCAGCTGCCGTGAGTTTCAGTTATAGAGATACGGGTCTTTTTCGTTCAAACCGCGTTTTAGAAAGCTTTGTTATGTCGAGAACTAGTCGACGGTACAAGCCTTTGCAGGCGAATAACGATGCTCTCCCTGGTTGCAACTCGGTTCGGATGCCCCGTGCTCGGGTACTGGTCTTCTGTCTCTTGGGTGTGCTGACTCTTGCTATGGTGTTGGGCTTGTATTTGTCCAACGAAACAAGCAGCAACCGCAACAACAGAATCCCCGTCGTAGATTTGGCAAAAGACCGGTTATCCCATAAGGCCAGTAAGTCTTCTCCATCCCAAGTGCGACGGCTGGTGTCCCAGGTAGACGGATCACGCCTGTGGGAGACTCACCTTAGGCCCATCCTCATTGAGAGACTCCCAGGAACCCTGGGCAGCCAGGCCGTACGCCAACACATCTCCTCCACCTTGTCCTCCCTCTCCGCTGGCTGGACAGTAGAACTCGACTCTTTCCTGTCGCCAACGCCTCGGGGTCAGGTCACTTTCTCCAACATCGTTGCGACCCTTGACCCCGGGGCCCCTCGCAGGCTGCTGCTGACCTGCCACTATGACTCCAAGGTCCTACCCCCGGACCCACGGGTCCCGGAGAGGGTGTTCCTGGGGGCCAGCGACTCAGCGGTGCCCTGTGCCATGATCCTGGAGCTGGCTTCTGCCTTGGACGCCCAGCTCAAAGCTCTCAATCAGCAGGCATCTGCTGTAACCCTCCAGCTAGTGTTTTTTGACGGAGAAGAGTCGTTTGAGGAGTGGACAGCCACAGACTCTCTCTATGGATCAAGGCACCTGGCAGAGCGCATggcacacacaccccacccactaggctccacacacaccaacctgcTGCAGGCTGTGGATCTCTTTGTTCTACTGGACCTGCTTGGTGGTCCAGACCCTTTGATTGTAAATCACTTTGACAACACTGCCCGCTGGTTTGACCGTCTCATCGCTGCAGaGAAGAGGCTGCACAGGCAGGGTCTGTTGACCTCTCACCCCTCTGAGCAGACCTACTTCAGGAAGGACGTGTACCTGGGCCCTGTGCAGGATGACCACATTCCCTTCTTACATAAAGGTGTTCCTGTGCTTCATGTCATTGCCACCCCCTTCCCCCCATTCTGGCACACGCTGGATGACACGGAGGAGAACATGCACCGACCCACAGTGGAAAACCTCACCAAGATCCTGGCTGTGTTCCTGGCCGAGTACCTGGGCTTTTAACCACACCTGGACCCACCATTGGACTGGTCCCATAACCCGAGAACCAACAGATTACATGGGACACCTTTTAACCACAGTGTAGGAAATACAGACAGGGGTTTGGGGCAGTTTTGCCCTGACGTTGCAAAAGACTAGGAGAGATAATGTTCCTGTGTCACTGGACAGGTTCTATCCACTGAAACCAACACTCATAGACACATTGATCTGAGAGCAGAACTACCATCAAGTGATCCTGCTGGATGTTGGCAGCTTGTATCACAGAAAAACCTTGATGGTACATGTTCATGAAAAATAACTGGAAGAGGCCTTTGTGGATTTTAATATTCTCATCACCTCTTTTTTTTAAGTCTTAAGGTAACACTACTAACCTAATCTTTTCTTTATGCTATATGGTCCTCTGTTGTGATTTTCCAACACTCAGTGAATATCAGACTGTAGACTTGATTTCATGCCATAAGCTCGTTGAGCTGACATTGACGGTTGTATTCACAGAGCATGGCAGTGACCGAAAAAACTTGAACATAACAATGAATGACATTGAAATGGTTGTCCCATCACTGGATATCTTCTGTATGCATTACCTCTCCCCAAGAGGTTTCCGGCCCAGGCTTGGTTTAGCATGTCATCTGTCTCACATCTTACCAGAGTGCTGATTTCAAAAACGGCTTCAATCAGAGAAGGTGCTGGGCGAAAATAAGCTGGATAAGAACACAGCTGAATCAAAAGTGTCAGTCTGAATCTAAATAGGCCGGATTGCCTCTGCGGGAGGCAGGCAGCTTGCGTGCACACACTGGATGATGTTGTTTAAGCTCAGTGAATAGGAATCATCTCACACCCGTCCCtatgggacatacagtgggagaGGCTGTGTGCTTGTTCTGGCTGTACTAACATTTGGCCGTGGTTTCTCTCAGCTGcaacctgggttgtgttcaggaAGCATGATATGGGAGCACATTTTTTTTCAAACCATATTGTTTATTCCCAAATGCTTCAAGTGCTTGTCAATGATTAGGTCTGATGACACATTTGTGTTTTCAATTaaactatttaaaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339624 lncRNA upstream 206047 6007974 ~ 6011892 (+) True G2045277
TU2339606 lncRNA upstream 262495 5954615 ~ 5955444 (+) True LOC110507399
TU2339615 lncRNA upstream 264893 5951704 ~ 5953046 (+) True G2045273
TU2339614 lncRNA upstream 266587 5951051 ~ 5951352 (+) True G2045272
TU2339610 lncRNA upstream 281299 5936339 ~ 5936640 (+) True G2045268
TU2339758 lncRNA downstream 2166 6225188 ~ 6226090 (+) True G2045391
TU2339761 lncRNA downstream 17500 6240522 ~ 6246880 (+) True LOC110507411
TU2339827 lncRNA downstream 126824 6349846 ~ 6350342 (+) True G2045453
TU2339883 lncRNA downstream 229010 6452032 ~ 6452234 (+) True G2045506
TU2339900 lncRNA downstream 269072 6492094 ~ 6492423 (+) True G2045520
XM_021587390.2 mRNA upstream 10372 6112520 ~ 6207567 (+) False LOC110507407
XM_036964759.1 mRNA upstream 10372 6112520 ~ 6207567 (+) False LOC110507407
XM_036964760.1 mRNA upstream 10372 6112520 ~ 6207567 (+) True LOC110507407
XM_036965264.1 mRNA upstream 152869 6028163 ~ 6065070 (+) True LOC110507405
XM_021587385.2 mRNA upstream 196702 6012537 ~ 6021237 (+) False LOC110507404
XR_002471122.2 mRNA downstream 17458 6240480 ~ 6246883 (+) False LOC110507411
XM_021587395.2 mRNA downstream 24593 6247615 ~ 6265219 (+) True LOC110507412
XM_021587399.2 mRNA downstream 72816 6295838 ~ 6324480 (+) True LOC110507416
XM_021587397.2 mRNA downstream 111310 6334332 ~ 6341809 (+) False LOC110507414
XM_021587398.2 mRNA downstream 113250 6336272 ~ 6341809 (+) True LOC110507414
TU2339435 other upstream 310700 5897517 ~ 5907239 (+) True LOC110507398
TU2339431 other upstream 321826 5891847 ~ 5896113 (+) False LOC110507397
TU2339420 other upstream 321826 5893023 ~ 5896113 (+) True LOC110507397
TU2337845 other upstream 1525067 4685915 ~ 4692872 (+) False LOC110507374
TU2339902 other downstream 271811 6494833 ~ 6495134 (+) True G2045522
TU2340040 other downstream 469522 6692544 ~ 6693044 (+) True G2045655
TU2340054 other downstream 496742 6719764 ~ 6720692 (+) True G2045665
TU2340813 other downstream 1022784 7245806 ~ 7251575 (+) False G2046345
TU2340814 other downstream 1022784 7245806 ~ 7251575 (+) True G2046345

Expression Profile