RNA id: XM_021587394.2


Basic Information

Item Value
RNA id XM_021587394.2
length 4163
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC110507410
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6228113 ~ 6235871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGGCTGAAAAGTGTTTGCTGAAAAAAAAAGAAGGCTGTAGGCCTATTTAGTACAATCTGATAACAACATCAGATTGTCAACAAAATAATGTGAATGTTCAATCTTGAATTAAGCAATAACATTTATctaccagtagcctaataaaaAAGGTATTGAACAGGCAGTGCTATAATGAATCTTCGAATGGGAGATTGACGAGGTTAGGGGCGTGTGTGACGCGTGTAGCTGTGGCAGACACTCGTCCACggagaatagaagagagagagagagcgtgcaggggagggaggaggaactAAAAGAAAAAAGTTCAAACTAAAAATGGCTTCCTTGTCTTTGGAGTCTGCAGAACAATCCGAGAATAGCACGGAGGAGTCTACCCAAGAGGCCGCTCTGGTAAAAGAGGAGACGGATCCGGATGAAGTTTCAGAACAATTGCTAAAAACTTTCCAGAACTCGGCGCTCAGCTTTTCGACAGATCAAGTAGCATGTCTGTGCGAAGCCCTTCTACAGGCGGGCAATGTGGATCGCCTGTGGAGATTCCTATCAACCATCCCTCCTTCGGCCGAGCTGCTACGTGGCAACGAGACGCTGCTCAAGGCCCAGGCACTAGTCGCTTTCCACCGGGAAGAATTCAAGGAGCTGTACGCAATATTGGAAAGCCACGACTTCCACCCCAGCAACCATGGGTTCCTGCAGGACCTCTACTTGCAGGCGCGCTACAAGGAGGCGGAGAGGTCCCGAGGTCGTAGCCTGGGCGCCGTGGACAAGTATCGGCTTCGGAAGAAGTTTCCCCTGCCGAAAACAATCTGGGATGGAGAGGAGACTGTGTATTGTTTCAAAGAGAAGTCTCGCAATGCACTGAAAGAGTGTTACAAAGGCAACAGGTATCCCACTCCAGACGAGAAGAAAAACTTGGCCAAAGTGACTGGACTCTCCCTCACGCAAGTTAGCAATTGGTTCAAGAACCGACGGCAGAGAGACCGAACCCCGTCCGGTACCAACAGCAAAAGTGAGTCCGATGGTAACCACAGCACAGACGATGAGGGTGATGACATCTCAGACAAACCAGAGGACATTGTGGGCTCCAcagcctccatctccctctctggcACCCCCTGCAGCACTGGAGGCCAGCTCTTCCTCAACGGGGCAGGTGGGTTCCTCACCGCCTCCCACCCCTTACTCATCAACGGGGGCTCCCTGATCTCCGGGGCAGGGGGTGGCGTCATCATCAACGGGCTGACCCTGAGCGATGGTCACACGGTTACCCTCAGCCCCATATCGGCTAACTCACCTCTGCTCTTCAATGGAGCGCAGGTCATATCCAAGAGCAGTGAGGATATGGGTCTTGAGGGCCAGGGGGTTATGGCCATGGAGGCCCAGCCCAGCTctgccatctccctccctctgacAGAGGATCTTAAGACGGACAATGTAAGCCTGACGAACCCCTCAACCATCCCCACCCTGGACTTCATCAATGTCCCAGAGGGGATGGTTCTCAAAGCCGAGGACATCCAGAcagtctctccttcctccttgtCTTCCCCCTCAACATTCTCCCCCACCTCCCTTTCCTCCCTGGTTCTgactcaaaatggctgcctctccGACACCCTCACCCTTCCGGTCTCTATGTCCTCTCCGGGTGTGGTCATCTCCAGCCCTGTAGTGGGCCTCCCCAGCCAGCAGGGGGAGTATGTGGTGTTTGCCACGGCTGGTTCTCAGCTCACCCCCTCCAGCTCCATCTGCCAGGTGGTGTCCTCCTACAGCTACTCCACCCCACAGGTATTCTCCCTGCCTCAGGTGGTGCCCTCCATCCAGGGTGTCCCCGTATCCcaactggtccaacacacacctGGAGGCCAGGTGTCCCAGTGTCCCCAGTTAATCCCGGTGtcccccctcacctcctctctcccccagggCACCCTCTCCCAGTTCCAGGCCCACCAGACTCTGAACATTGCCCCCCGCCTCGCCCAACCCCTCCCCCAGCATCATACTAGTTCCTCTACGTTGGGAGAGGGAACCACCATCCTCTCCCTTTCCCAGCTCCCCAACGGACAGCTCCCCCAGGGACTCACACTCCAGCTGGGTGAACAGACCTCAGCTACCATCCCCACTCTGACCCAGATCCAGTCCCCACTAGGCCATCACCAGATCATCTCTCAGTCCAAAGAGACAATCCCAGGCCAGTTGGTTCCCCTCTCCCTGCCCCAGCTGGTGCCTGTCTCCTCCACGGGACAACTCTCCTTCCCTCAGGTGGGCCCGTCCACCCCTTCTCTATCTGGATCTGGTGGAGCCTTCCAGATCCTAACCTCGGCCCCTGGAGGTGGGATGACTCAGGGGCCCTTCAGGATAAACCAGCTGGGACCCCTCCAGACTGTAGTCCCCCCGACCAGCATGGCTCCTGGTGTCCAGCTCCTCAACTCCGGGGTCATTCAGCTCCCCTCCGCCTCGCCAGgGAATCTCCTCTATGGTGGAAGCCCCATCCTGAGTTACCAGAACggcaagctgatcctaactaTCCCAGCTGGCATCCAGTTCGGCAGCCTGCCCATGAAACCCGTCCCTGAGGCTTCTAACCACCACACCAACGGAGTAGGCCCTGGACTCACCCTCAACCCTGTAATCCAACCTACACCTACCCTCCTCCCAGTCTCCACCTCCGTCCCAACGTCCAACACCCTCCAGACATCCCCCCTCTGCTTCATCAACTCCTCTCCGCTCTACTGCAATCCTGAGATGGGTGTCCCCACCAACCAGCCCCACTCCACCACCTCCCCACACACCCTGGACCTCTCTGCCACCCACACCCCTCCCAATGCCCTCACCCCAGAGAGCATGCTCTCCCTCAGCCCCATGTGCAGTGGAGTGACCCCCACCACTCAGCTCTCCCACACCACCTGGagccctgtccccctctccacctctgccAGCCTGACTATGTTTGACGTCCGTGGGAAGGGAGATCTGCCCGAGGACCCGCCTCTGCTGGACCTACCTGGAGGCGAGGCCCTGCTACTAGGCAGCACCTCTCCAGAACAGGATGTGGACAGGGGGTCGCCGTTGGGGGACCCAGTGGAGATGGATGGAGACCCCAAGATCCTCACCCAGCTACAATCAGTCCCTGTGGATGATGGGTTGGGGCTGTAATCCAGTCCCCCAGCCCACACCACCACAAACTGTTATAGAACAATCTGGAAGGTTTTGTTTGTCTGACCTCAGTGCTCCCCTGGCTAGGTTTGCATTGAGGAGTGGACAGGCTTTGACTCGTAAGAGAAAGGTGCTTTGACTAAATAAATCCTCTGCCGATGATCCTTTGGATAAACCGTCATGGGATAGGCTGATTGTATGCAACGCGGAATGACCTGGAGGATGGCCTTTCATACAGGCTAGCCTATTCCCTGATTTGTGTTACTCAACTGTCCACTGCTTAGTCTCCACAATTTAAGCACTCATCTGCCTTCCATAAGCCCAGAGCCCTTCCTGTGTCCAGTCAGAGCACAACGTTTATTTGTAAGGACATTCTGCTACTTTTGTGCACAGACGTGCGTTTCAGCCAAGACTATTTGTACTACAAGGGAATGAATGCCTTGGGTTTTATATGTGGTGTTGGTTGAGCAGTATGCCACGGCCAGGCTCTGTCTTAAGTCTCTAAACACAGTCAAATGCAGACACAGACGAGCGTTCAGTCCTGTTGAGTTGGTGGTTCTGCATGGCTGGCTGCTCACTCTAGTGTTGGTGTAGTTTTGAGTGCTGCCGAGTATTGCACGGTTTGGCCTCGGTGAAGGCTACAGAGAGTGGACTGACAGTGGCACCAGAGACCCCGGACTTCTAGCTTTGAGATGGACTGTGTACCCCTCTCTGTCAAAACTGGTCACCAGTGTCACCGCATCAAGGGCGCCGGCTCATCATTTAACTACATGTTGGTATAAATGCTAAGCGCTATCGCATCTGAGGTATGTAGGAGGAAATGGGAGTCCCCTGagatttctttttttattttttatttttttactctaTGCAATCAATGCATGTTCCTCGTGTAAATATGACCATGTGACACAGATATGACATGTATTACAAGCAGTATGTAAGCAAGTCTAATTGGGATAGACCAAGCTTTTATTAACGACAAGCCTTTTTATACACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340275 lncRNA downstream 2224 6225187 ~ 6225889 (-) True G2045869
TU2340106 lncRNA downstream 161585 6062148 ~ 6066528 (-) True G2045715
TU2340116 lncRNA downstream 266125 5961458 ~ 5961988 (-) True G2045725
TU2340114 lncRNA downstream 274115 5953685 ~ 5953998 (-) True G2045723
TU2340110 lncRNA downstream 278296 5949564 ~ 5949817 (-) True G2045719
TU2340288 lncRNA upstream 9134 6245005 ~ 6246876 (-) True G2045879
TU2340287 lncRNA upstream 27286 6263157 ~ 6265208 (-) True G2045878
TU2340311 lncRNA upstream 95749 6331620 ~ 6334226 (-) True LOC110507423
TU2340421 lncRNA upstream 260389 6496260 ~ 6496468 (-) True G2046000
TU2340433 lncRNA upstream 282604 6518475 ~ 6518688 (-) True G2046009
LOC110507409 mRNA downstream 3589 6222927 ~ 6224524 (-) True LOC110507409
XM_036965171.1 mRNA downstream 123104 6068424 ~ 6105009 (-) True LOC110507406
XM_021587366.2 mRNA downstream 429621 5795135 ~ 5798492 (-) False c27h19orf54
XM_021587367.2 mRNA downstream 429621 5795135 ~ 5798492 (-) True c27h19orf54
LOC118944669 mRNA downstream 461281 5759611 ~ 5766832 (-) True LOC118944669
XR_002471123.2 mRNA upstream 95406 6331277 ~ 6334270 (-) False LOC110507423
XR_002471124.2 mRNA upstream 95406 6331277 ~ 6334270 (-) False LOC110507423
XR_005039967.1 mRNA upstream 95406 6331277 ~ 6334277 (-) False LOC110507423
XM_021587406.2 mRNA upstream 113273 6349144 ~ 6351898 (-) False LOC110507420
XM_021587405.2 mRNA upstream 113273 6349144 ~ 6351899 (-) True LOC110507420
TU2339541 other downstream 357974 5868575 ~ 5870139 (-) False G2045223
TU2339133 other downstream 686480 5541027 ~ 5541633 (-) False kmt2a
TU2337664 other downstream 1813690 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 1848684 4378934 ~ 4379429 (-) True G2043483
TU2337606 other downstream 1879704 4343599 ~ 4348409 (-) True G2043460
TU2340414 other upstream 253851 6489722 ~ 6491119 (-) True LOC110507421
TU2340423 other upstream 266544 6502415 ~ 6505948 (-) False LOC110507418
TU2340424 other upstream 266544 6502415 ~ 6507581 (-) True LOC110507418
TU2341171 other upstream 756512 6992383 ~ 7028235 (-) True LOC110507058
TU2341272 other upstream 946214 7182085 ~ 7307023 (-) True LOC110507059

Expression Profile