RNA id: XR_005039967.1


Basic Information

Item Value
RNA id XR_005039967.1
length 1997
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110507423
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6331277 ~ 6334277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCACCAGTTGGGGAAACCCCCCAGGGGCAGTGTTGTGCTGGCTGTAGCCATGTACAAACGTCAAATAACGGCTCATTCCATCACCTATATTTAGCAAACTACTGTAGCACAATAGCCGCCAGTGCAATGTCTCGAGTGGGATTATTGTTTTTatctaatacatttgcaaacatttctaaaaacctgttttaaacTTTGACATATGGCTGCTACTAAAGGGGTAGATAGTTCAATAGTAATATCCTCTAAAACGCTCCGGTGACAAACAAACTCTGCTGCCCTGTTTCCAATCGTCCACATGgctgggagaacctattcaagtaaATACCTTGTAACTGGAGATTCCTTCAAAACGATTGCCTACAGTTAATGTGTAGGGCACAGCAAGGTTGGGTGACTAGGGCCATCTGGGACTGCCTGCTGGAGGAATTCAGGTGTGTGAAGGAGCAATTCAGGTGTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGAGGATATACACAAGGACCAGGAGGGGATCTGCAGCTCCCCGCCGTGTGCCAGAGGAAAAGTCTGCTGCTCTGCAGGATGTTTTAAGGATGGGGTCCAACAATACAGCAAGAGAGGCAATCTGTGTGCGGGAGATCTTCACCTCCTACTTCTTTCGAAGagggtgctgttccctggcaacaccatagactacactatgcacaaccaaaggctcttttaagagccattcacattgcaataagagtattcttccatttacttagctatgtcaactgcagttattcaattcccagtttctctccctttgatttctacttctcaggtgaggatgctgtttaggtaagggtgtgatgtttgtacaaaaacaaaacaggctaTTTTAAATCACCCATATTGAAAAAATGTAGAACAATTAGACACCCTATaacccacacctacacactcatgtatcaatctgattgatggattATGTTGTGCAGTAAGAAGGCTCAGGTGTATAACTGtggctccttccaccttcaaagAATAGGCAAGAGTGCCAACTATGGAGAATAATAAGACACTTAATTATTTCTATAACTACGCTATATTGTTTGTTCTTGTGTTTCCGTTCATGtgtttcagcataaagtactctccagccacttagtgtggtgtggacaccaggttatatcagctgtgtcggtgaacacctcccgcatctgaactggctacatagagggcacttggtcaggtcaacaagaagtattattaaagagatgtttTACATTgagatacagatagagatgtagttgtcccagagttaatgatccaagatatgttttgatgtgagagaggatgccaacTCCCAGTCCCATCATCACCACCTCAtccgctcttaagataaccttcgggccgACTAGAGACACTTAtgcaattgtgatgaactgagagaatatttggGTAGCAATGATTCATTaatcttacctctttccctttgtcttttacacctctcaccacctctttcttcctctgttttaTAATGTACAACAGATGtacattgaagtacagattgaacttgcatttataatattacaaatatatttatgcatgtatttataacacttggATAATTAACTTCTTTCAATATAGTGtcacattctctactggttgaaattaaatctctcatttgatgaaatactacacctatcctgtgttcatcagatcaatgcagatgaagggcATTAGATATCGAGATGAACCGGTTTTAGAGTATTTACATGATGCCTaggaagtgtagtgtactgtttcttaaattatatttctgtatgaattatatatgaattacaaatcagcatttaactagttaaatcctgtttctagtctattagttacaatgtgtaaccatTGATGCCACAGGACCAAGATTGGTAAACACTGtagaagtgtataattgtaatacatacatgcagacacagtgtcattcaaagactggaatttgatactcctggtattggatatgactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340287 lncRNA downstream 66069 6263157 ~ 6265208 (-) True G2045878
TU2340288 lncRNA downstream 84401 6245005 ~ 6246876 (-) True G2045879
TU2340275 lncRNA downstream 105388 6225187 ~ 6225889 (-) True G2045869
TU2340106 lncRNA downstream 264749 6062148 ~ 6066528 (-) True G2045715
TU2340116 lncRNA downstream 369289 5961458 ~ 5961988 (-) True G2045725
TU2340421 lncRNA upstream 161983 6496260 ~ 6496468 (-) True G2046000
TU2340433 lncRNA upstream 184198 6518475 ~ 6518688 (-) True G2046009
TU2340438 lncRNA upstream 190659 6524936 ~ 6525187 (-) True G2046014
TU2340445 lncRNA upstream 201029 6535306 ~ 6535568 (-) True G2046021
TU2340446 lncRNA upstream 201407 6535684 ~ 6536012 (-) True G2046022
XM_021587394.2 mRNA downstream 95406 6228113 ~ 6235871 (-) False LOC110507410
LOC110507409 mRNA downstream 106753 6222927 ~ 6224524 (-) True LOC110507409
XM_036965171.1 mRNA downstream 226268 6068424 ~ 6105009 (-) True LOC110507406
XM_021587366.2 mRNA downstream 532785 5795135 ~ 5798492 (-) False c27h19orf54
XM_021587406.2 mRNA upstream 14867 6349144 ~ 6351898 (-) False LOC110507420
XM_021587405.2 mRNA upstream 14867 6349144 ~ 6351899 (-) True LOC110507420
trnastop-uca-4 mRNA upstream 18046 6352323 ~ 6352409 (-) True trnastop-uca-4
XM_036965611.1 mRNA upstream 23896 6358173 ~ 6363224 (-) False LOC110507422
XM_036965613.1 mRNA upstream 23896 6358173 ~ 6363224 (-) False LOC110507422
TU2340276 other downstream 95755 6232615 ~ 6235522 (-) True LOC110507410
TU2339541 other downstream 461138 5868575 ~ 5870139 (-) False G2045223
TU2339133 other downstream 789644 5541027 ~ 5541633 (-) False kmt2a
TU2337664 other downstream 1916854 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 1951848 4378934 ~ 4379429 (-) True G2043483
TU2340414 other upstream 155445 6489722 ~ 6491119 (-) True LOC110507421
TU2340423 other upstream 168138 6502415 ~ 6505948 (-) False LOC110507418
TU2340424 other upstream 168138 6502415 ~ 6507581 (-) True LOC110507418
TU2341171 other upstream 658106 6992383 ~ 7028235 (-) True LOC110507058
TU2341272 other upstream 847808 7182085 ~ 7307023 (-) True LOC110507059

Expression Profile