RNA id: XM_021587407.2


Basic Information

Item Value
RNA id XM_021587407.2
length 1085
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC110507421
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6489704 ~ 6491119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTGACAAAAAGTCGAAATGAGACCACATGTATCTGTGCTTCGCCTCCCGAGAGGACCTGATCCGAATGGCCGCGGATTCGACCCGAACTCACCCCGTTTCATCGCGCTGTGTCCAACTACTATTTCAGCTTCGACTGAAACAGGGACCGACTCAGTCCAAATGAGAGAAGAGCAGCGTGCACGGTCGGTTTTGAGAGAAAGCTTCCTGAGAACGCTCATAGCCATGACCAACAAGCAGGTGCAATTCCACATGTACGAGAGAGTCAAGGTTGAGGCCAAGTTTGGAGCTTCGGACATTGACGTGCTCAACTTCCAAGTTTCAGAACTGCATACCCCCATTGGGGTGCAAAAAGAAGCTCTGCTCAGATGTCAGGATGTCATTTCATATTCCTTTGATCTCTGAACAGTGCTGTTCACCAATTTGTGATGTTCAGTGCTGTTCACTTAATTGTGATGTTTTTGAACAGATGTCCAAGAAATCCGATTTGAACTGTTATTTTTAATATGATTTCGTTTCACATACAGGGTGTTTTGGGAGAGTGATAACTGTTCCATTGCTACACAGGGTGTTCTGTCTGGCTGAATATGTAGCAAGCTGTTTCCATGTATTATTCTGTTACTTTGAGTATGAGGGAGACTTGCCATTGCCATATGTTTTTTTATGTGGCCAGCCAGGTATTGAGAACTCTGATATACAGTCTATGATTAGATTTTTTCATCGTTTCCTATTCATTGTACCTCCACTGGAGGGAGATGTCAGCACTGTCTTTGCAACAGACATGTCAGGGGGCTCTTATACCACCAGGTTATCTGACACTCAGCAGTTCTCGGCTGTCCAGTCCATTTCATTAGGAAGAGACGAGGACGCATGTCCGCAGGTGGAATTTGGATTGAATTGTCTGGCAACCTGAAAATCTTGGCATTGTTCCTTGAGTATAGGACAATGTGGTTCTTGTCTTGTTCCTTCTGATAAGATCTGTTGCTGAGATATGTTTGTTTACCACTGAAGCCTATTACATTGTCAACGGGCATGTGCACTTTGTTTTTTTTTCTACTTTGAATAAACATTTTTGTCACTTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340311 lncRNA downstream 155478 6331620 ~ 6334226 (-) True LOC110507423
TU2340287 lncRNA downstream 224496 6263157 ~ 6265208 (-) True G2045878
TU2340288 lncRNA downstream 242828 6245005 ~ 6246876 (-) True G2045879
TU2340275 lncRNA downstream 263815 6225187 ~ 6225889 (-) True G2045869
TU2340106 lncRNA downstream 423176 6062148 ~ 6066528 (-) True G2045715
TU2340421 lncRNA upstream 5472 6496260 ~ 6496468 (-) True G2046000
TU2340433 lncRNA upstream 27687 6518475 ~ 6518688 (-) True G2046009
TU2340438 lncRNA upstream 34148 6524936 ~ 6525187 (-) True G2046014
TU2340445 lncRNA upstream 44518 6535306 ~ 6535568 (-) True G2046021
TU2340446 lncRNA upstream 44896 6535684 ~ 6536012 (-) True G2046022
XM_021587404.2 mRNA downstream 22357 6456398 ~ 6467347 (-) True bmp16
XM_036965560.1 mRNA downstream 69992 6367043 ~ 6419712 (-) False LOC110507413
XM_036965561.1 mRNA downstream 69992 6367043 ~ 6419712 (-) False LOC110507413
XM_036965562.1 mRNA downstream 69992 6367043 ~ 6419712 (-) True LOC110507413
XM_036965610.1 mRNA downstream 126383 6358173 ~ 6363321 (-) True LOC110507422
XM_021587403.2 mRNA upstream 10996 6501784 ~ 6512110 (-) False LOC110507418
XM_021587411.2 mRNA upstream 119658 6610446 ~ 6672160 (-) True ptgir
XM_021587414.2 mRNA upstream 197733 6688521 ~ 6694020 (-) False LOC110507427
XM_036965487.1 mRNA upstream 197842 6688630 ~ 6693337 (-) False LOC110507427
XM_036965486.1 mRNA upstream 197842 6688630 ~ 6693594 (-) False LOC110507427
TU2340276 other downstream 254182 6232615 ~ 6235522 (-) True LOC110507410
TU2339541 other downstream 619565 5868575 ~ 5870139 (-) False G2045223
TU2339133 other downstream 948071 5541027 ~ 5541633 (-) False kmt2a
TU2337664 other downstream 2075281 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 2110275 4378934 ~ 4379429 (-) True G2043483
TU2340423 other upstream 11627 6502415 ~ 6505948 (-) False LOC110507418
TU2340424 other upstream 11627 6502415 ~ 6507581 (-) True LOC110507418
TU2341171 other upstream 501595 6992383 ~ 7028235 (-) True LOC110507058
TU2341272 other upstream 691297 7182085 ~ 7307023 (-) True LOC110507059
TU2341242 other upstream 951885 7442673 ~ 7468494 (-) False fxyd6

Expression Profile