RNA id: TU2340424


Basic Information

Item Value
RNA id TU2340424
length 1349
RNA type TUCP
GC content 0.53
exon number 6
gene id LOC110507418
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6501784 ~ 6512110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTATGGTCTGTTAATGTATTTTATGTGCATGTGTTGTTGTATGGCATCtaattgtgggtgtgtgtgggtgtgcactGTGCATGTGGATCCTTTGAAATTAATGTCTTCCCCTGGTAAACTGTGGAGGCAGATGCAATGACAAACAAATAGTTTAACTTTCCCAGTTTATAGACTTCCTGTATATTACCTTgctctgagctgcacttcctgcaGAGGTCCTCCCCACTCTGTCTTTTTCTCCATCTGCCTCCAGTATGTCAGGGAAACAGCCCTGTGGTCTAGGTGCCTGTTTCAACCCAACAACAGAACGTTGCTGTGTGAACCCTACATCTCTCCAGGGACAAAGTTACTCCCACGACCAGACCTGCTGTGAGGGAACACTACGCCACACCCCATATCTCTACAATGGTGCTAGCTGTGGCTCTCAGGTTTACAATCCAGACAGTAAAATCTGCTGTGCCGGGAAGCTGTCCAATAGGGTGCTTGGAAAAAACCTGtgCTGTGGTACAACGCCGTATGGTGTAGAGGACCGAGGGGTGTTGTGCTGTAACCAGACCTTGCACTGTGAGGTGGAGGATGGGTACCAGTGCTCCCCAGGTGGCCACTTGTATCTGCCATCCCGTGACATGGTGTGTGGCACACGAGTTCATCTGAACGATCCAGACAAACACTGCTGTGGGGAGGAGACATACTACCCTTGGAATGAAATCTGCTGCAACGGACACAAACACAGGGGGAACAAGTCCTGCTGCGGAGTCAAGGCTTATGACCCCAGCTGTGACCAGATGAAGTGCTGTGCAGGGACTCTGTACGACCTGCAGTTTCAGGACAGACTCTCAGAGGAAGCCCAGTGCTGTGGGAGTGTCCTGATGGAGGCCGGCTCCACCCAGACCTGCTGCTCTGCCCCAGGGCTAGACCTGCTCTATCCTACCCAGCCAGGGTTCACCTGCTGTGGGCACCGCTACCCCAACTCATCCCTGTGGTCCTGCTGCGCCGGGGTCCTGCACCCAAGGCCTGAACCACACAACACCACCAAGAACGTGATTCCAGGACCCAGGCTTCTACCACTGGGGGATCTGAAGACTGAAGTCCTGTGTCAGAGCAAAGttcTGGTAGGGACAGTGGAGAGTGTGTCTGTGAAGATGAATGAGCGGTCCATCGTGATGGTGAACACCATGTACATGCAGGCCTCGCGTGGCCATGTCAGCGCCATGGCTTCCCCTCACTACCTCACATTACCCGACCACTGCAGCTCCCCTGAACTGGTGCTGGGCAACACTTACATCTGGGTGAAAAATAATTACTCAGACACCATAAGTTTCATCTCTGATCTCAGCGATCATTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340421 lncRNA downstream 5947 6496260 ~ 6496468 (-) True G2046000
TU2340311 lncRNA downstream 168189 6331620 ~ 6334226 (-) True LOC110507423
TU2340287 lncRNA downstream 237207 6263157 ~ 6265208 (-) True G2045878
TU2340288 lncRNA downstream 255539 6245005 ~ 6246876 (-) True G2045879
TU2340275 lncRNA downstream 276526 6225187 ~ 6225889 (-) True G2045869
TU2340433 lncRNA upstream 10894 6518475 ~ 6518688 (-) True G2046009
TU2340438 lncRNA upstream 17355 6524936 ~ 6525187 (-) True G2046014
TU2340445 lncRNA upstream 27725 6535306 ~ 6535568 (-) True G2046021
TU2340446 lncRNA upstream 28103 6535684 ~ 6536012 (-) True G2046022
TU2340447 lncRNA upstream 29256 6536837 ~ 6537093 (-) True G2046023
XM_021587407.2 mRNA downstream 11627 6489704 ~ 6490788 (-) False LOC110507421
XM_021587404.2 mRNA downstream 35068 6456398 ~ 6467347 (-) True bmp16
XM_036965560.1 mRNA downstream 82703 6367043 ~ 6419712 (-) False LOC110507413
XM_021587411.2 mRNA upstream 102865 6610446 ~ 6672160 (-) True ptgir
XM_021587414.2 mRNA upstream 180940 6688521 ~ 6694020 (-) False LOC110507427
XM_036965487.1 mRNA upstream 181049 6688630 ~ 6693337 (-) False LOC110507427
XM_036965486.1 mRNA upstream 181049 6688630 ~ 6693594 (-) False LOC110507427
XM_021587413.2 mRNA upstream 181049 6688630 ~ 6694020 (-) False LOC110507427
TU2340414 other downstream 11296 6489722 ~ 6491119 (-) True LOC110507421
TU2340276 other downstream 266893 6232615 ~ 6235522 (-) True LOC110507410
TU2339541 other downstream 632276 5868575 ~ 5870139 (-) False G2045223
TU2339133 other downstream 960782 5541027 ~ 5541633 (-) False kmt2a
TU2337664 other downstream 2087992 4414065 ~ 4414423 (-) True G2043518
TU2341171 other upstream 484802 6992383 ~ 7028235 (-) True LOC110507058
TU2341272 other upstream 674504 7182085 ~ 7307023 (-) True LOC110507059
TU2341242 other upstream 935092 7442673 ~ 7468494 (-) False fxyd6
TU2341243 other upstream 935092 7442673 ~ 7468494 (-) False fxyd6
TU2341244 other upstream 935092 7442673 ~ 7468494 (-) True fxyd6

Expression Profile