RNA id: XM_021587415.2


Basic Information

Item Value
RNA id XM_021587415.2
length 4105
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110507428
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6694165 ~ 6704533 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCCCTGAATTTGCgtcccgactctcagcgtacatccGTACAATCCGAAACGCAACCAAAATAAACTGTAGatacatccaacaagtttgtagagccacaagcttgatgtagtcacatgctaagaatatgggaccaaatactaacgTTTCGACTACTTTAATATACAAGTGaatttgtgtaaaaaaaataaaacacgtCTTCAAATGGTGGGAATAGATAAAGCGCACtcatttctaaatggtaaaacaaattagaaataccctcaaataataATCatctgaaacatttgatctccaatCCAAAACGTGGGAGTATAGAGCGAAATTTACACcgtttagcttcactgtccaaataaatacagaGGCGAGTGCACGTGTAGGTTACTTACTCATTCACTTCTGTACCTAACCACCATAGAGCGGGTCCCATCCCCAACCTGAACACATAACGCGACATATAACGGGCTCTATAGATAGCGTGATCAGCTCCCAACCTCATGTATACACAATTTTAAATCCAGTAATCTACAAGACCACGCAAATGCATGCCAGGTAATTATTTTAAGAGAAACAGAGGTGGATGAGGAAATGCCTACACTTATACCATGTGTTTGTGGCATCGTGttaaagagaaggagagaaaaggagaaagagagtggcGGACTATATTCAGTGAATAAATTGCTAACAGTTCTGAACATAAACTGCAGGGATCTAGTTAGAGAGTTGGGAGAGCTCATTCTATCTGTCCACCATGCTGCTATGGAACGCTGACAGGCTCATAATCCATACTGTTCATTCGGTCATGCAGTGCTAATCTAAGATCCCTTGCAGGTTGGAGATTAActagtagcagagagagagagagagagaggcagtgaccATAGATTTAGGCCAATAGCATCACAGGGCAAACACTGGCCagggacaggagagaaagagCGGTAGAAAgacaagagaaggagagagagtgggcgccatacagacacacactccaCATATCACAACACATACACATTGAGACAAACGCTAGGAATCCAGAAACTACGCCCACAAGCTAGTTTTACAAAGACAAGGATGGCCACCACGATTTCTGCCAGTATCTAGTGAAGCCCACCTGAATACAACTCTACAGTCCGGAGTTGACACATTGTCCACCTGCTCAGCGTGTCCAGCTAAACCCACTGCCCTGGACCTGCTGCGGGGGACACAGactgggagaaggaggagagaggggaacaagAGGACCAGTGCCAGGTCAGGAAAGAGACTCGAGCGGCACCTCCGAGGAGCTATGAGGACAGCCAGGCGGGCCAGCACCGTGGAGGTGCCCTCCTTCCTCCGCCAGCTAGCCAAGGAGACAGAGAAGATGGTCACCTTCTTCTTtaaggggggacagagagatggcCAGGAGGGGAGCGAAGAGGACTTCAGTGATGAGGATAACGGGCCGAGTGTCTACCTGGACCGGCCCGTCCTGGATAAACACACGGCCGAGGGGAGGTCTCAGTGGGGGGTGAACTATGCAACGGCCAGCATGCAGGGCTGGAGGGCGCAGATGGAGGACGCCCACACCTGCATGCCggagatgggaggggagctggCGGAGTGGGGCTACTATGCAGTGTTTGATGGACACGCTGGCAACACGGTGGCACAGTACTGCTCCCATAACCTGCTGCAACACATCCTCGCTACAGGGCGCGTAAAGGCACAGGAGGAGCCTGACGACGTGAAGGAGGGGATCGTCGAGGGCTTCCTGGCCATTGACAGCCACATGCACACACTGACGCGCCAGGAATGCTGGGAGCGCAGCGGCTCCACGGCGGCCGCCGTCATGCTCTCGCCGCAGTACGTCTACTTCGTCAACTGTGGCGACTCACGGACGCTCCTCTGCCGCGACGGCCAGGTCATCTTCTACACGGAGGACCACAAACCCTTCAACCCCAGGGAGAAGGAGCGGATACAGAACGCGGGCGGCTCGGTGACCCAGCATAGGGTGAACGGCTCCCTGGCCGTGTCCAGGTCCCTGGGAGACTTTGACTTTAAGGAGGTGGACTGGAGGTCCCAGACTGAGCAGCTGGTCTCCCCAGAGCCAGAGGTGTACGAGCTGGAGAGGTCCCCGCAAGACGAGTTCCTCATAGTGGCTTGTGACGGAGTGTGGGACGCCATCGGCAACGAGGAGCTGTGTGCGTTCGTCCACAGTCGCCTGCAGTTGTGCGATGACCTGAGGGAGATCTGCAACCAGGTCATTGACCTCTGCCTCTATAAGGGTAGTTTGGACAACATGAGCATCATCATCGTGACCTTCCCTGGTGCACCCCAGGTGTCACAAGAGGCCCTACAAAAAGAGGCCGAGCTAGAGACAATCCTCGAAGCTAAAGTGGAAGagattGTCAACTTGCTAAAGTCGCGGGACAAGGACCCAGACCTGCTGTACGTGATGAAGTTTCTGGTCTCTGAGGACATACCTGGCCTGCCACCAGGGGGAGGAGTCACCAGCAAAAGAGACTGTGTCATCTCTGCATATCAAAAGTTTGTAACGCCCTTCAGATCTCTGGAACCAATGGTAGAAGACCAAACATAGTGCAAGAGCGTGCCCTCTGTCTCACTAAACACATAAGCGCAAACTGGACTACAAAAGTAACTAAGttacttcccccccccccccgacacgtAATTGACACGTCGCATTCCAGGACATCGGAGGATCTGAAGAGTCCAACTACTCGTATCCATGGAAATGTGTTCTTCAGCCTCGCGTATCCATGGCGACCATTTAGAATTGGGGCCTCTGCTTTTCAGCTGAGCAATCAGCCAATAGCTAAATAAAGAACTATGGTGGGAGGGGGTGTGACCTGGGCCTGCCCTTAGCCAATCGTCTCTTCTCTGTTCCTCATTTGCACTGTCTATCAATAAGTCTACTGTAGCATCAGAGAATATCAAATAGTTAGCATTATTCCAGTAAGGGAAGAATTACATATTCCAAAACTATTCTTTAAAATACATGATAATTAGATATAATATTTATTAACTTTCTCACTTTACACTTTACAGTGCCTGGGTAGTTCATTTTCTTCAAGACTAGAAGCTTATGAATAAGGCTGATCATGTTACTTCATTTAAAAATCAAACAGATATGTTTCAGCAGTGTGCAACTCCATACTGCCGCATCAAATTCAATTGAAAAAAAACACCCCTTCAACCATTGCAGACCAGCGAAGGCTCCGATATGCATGTGTCCTGTGATGGCATGGCCTACACTAAATAATCTGCAGAATCCTGTGAGGGACCATAGGTGACAGGAATAGATGTGTGTCATGACGATGATGGACACCACATCATATGTCCAagggtgtgtgaatgtgtgtgtgtgtgtgtgagtagataACATGGGCTGTGGGATTATTAGCACACACACTGTAACCTGTTGCAGTTTGGAGCACAGACGCTGACAGTTAGACACGATTTAGACCCGTGTGACAGGTAAAGGAGTACAGCTACAGGTAAAATGTTCTTCTGCTTTTGAAAATAAGCGGGTTTTTGCCGTTAGCACGTTTTTCTTTTCGATACATGTCATTGTGCTGCTTTACAAAGCTCTCTGTTGCTGTACGGTTACTTTATTCCTCCTTCGGATCACACCAAACGGGTGGACATAGTAGCTGTATTCCatgacagaggtcagaggtcaaaaaGAGCTAGACTCGAGATGCTGCGGCATGTCTGTGTGAATTCTATGGAATCGGGAGGAAGTGGGATCAAAGAGCGCAACAGATTACCATCAGGACTTTCACAAATGTATGTCAGTGATTTGATGACTGTATGGGCAAGCCCTTAACTGACCCAAGGGGCAataaatgaatgaaataaaatgACATTCTGGGATTTTTGATAGAGCGGAGTGGGCTCTTACTCCTAAAATGTTTGATAGATACAGCACTACAGGGTTAGACTAAGGACCAAGGGAGAAGAATACAAGACAGTTCCGTAACGACCCATTGATATCGTTCCAGAACTGTCTTTTGGCCAGCTGTATGCATTTCAACCAGGGGCGTCGAATGcgggtttttcctttcaattaaccaggtgaggggagttctttact

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340543 lncRNA downstream 135 6693413 ~ 6694030 (-) True LOC110507427
TU2340497 lncRNA downstream 90072 6603629 ~ 6604093 (-) True G2046069
TU2340451 lncRNA downstream 150324 6543548 ~ 6543841 (-) True G2046027
TU2340450 lncRNA downstream 152574 6541365 ~ 6541591 (-) True G2046026
TU2340447 lncRNA downstream 157072 6536837 ~ 6537093 (-) True G2046023
TU2340553 lncRNA upstream 3999 6708532 ~ 6714206 (-) False G2046119
TU2340549 lncRNA upstream 8045 6712578 ~ 6714206 (-) True G2046119
TU2340563 lncRNA upstream 13882 6718415 ~ 6719266 (-) True G2046128
TU2340573 lncRNA upstream 32316 6736849 ~ 6737087 (-) True G2046136
TU2340574 lncRNA upstream 33004 6737537 ~ 6737767 (-) True G2046137
XM_021587414.2 mRNA downstream 145 6688521 ~ 6694020 (-) False LOC110507427
XM_021587413.2 mRNA downstream 145 6688630 ~ 6694020 (-) False LOC110507427
XM_036965486.1 mRNA downstream 571 6688630 ~ 6693594 (-) False LOC110507427
XM_036965487.1 mRNA downstream 828 6688630 ~ 6693337 (-) False LOC110507427
XM_021587411.2 mRNA downstream 22005 6610446 ~ 6672160 (-) True ptgir
XM_036964628.1 mRNA upstream 53102 6757635 ~ 6760305 (-) True LOC118944637
XM_021587424.2 mRNA upstream 106873 6811406 ~ 6816589 (-) False ap2s1
XM_021587425.2 mRNA upstream 106873 6811406 ~ 6816589 (-) True ap2s1
XM_021587426.2 mRNA upstream 281107 6985640 ~ 6988182 (-) True tmem160
XM_036965633.1 mRNA upstream 287834 6992367 ~ 7028249 (-) False LOC110507058
TU2340424 other downstream 186584 6502415 ~ 6507581 (-) True LOC110507418
TU2340423 other downstream 188217 6502415 ~ 6505948 (-) False LOC110507418
TU2340414 other downstream 203046 6489722 ~ 6491119 (-) True LOC110507421
TU2340276 other downstream 458643 6232615 ~ 6235522 (-) True LOC110507410
TU2339541 other downstream 824026 5868575 ~ 5870139 (-) False G2045223
TU2341171 other upstream 287850 6992383 ~ 7028235 (-) True LOC110507058
TU2341272 other upstream 477552 7182085 ~ 7307023 (-) True LOC110507059
TU2341242 other upstream 738140 7442673 ~ 7468494 (-) False fxyd6
TU2341243 other upstream 738140 7442673 ~ 7468494 (-) False fxyd6
TU2341244 other upstream 738140 7442673 ~ 7468494 (-) True fxyd6

Expression Profile