RNA id: XM_021587423.2


Basic Information

Item Value
RNA id XM_021587423.2
length 3194
RNA type mRNA
GC content 0.46
exon number 8
gene id rab4b
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6793919 ~ 6811036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaccgctaTTAAACCTCATCGAAGAATAAGTTGTGTTGTTGGAGGAAGGAAAGGAAACGGTGTGGCGAAGTCAGAAATCTAAAACGAGGAGTAATTGCCACATTAGAAAACAACACCACATCCTTTACATACGGTACGAAGAAATAAACGAAGAAAAGCCAACTGAGTCCATCGTTTTTAAAGCGGGGGCCGACATGTCTGAAACATACGACTTCCTGTTTAAGTTCCTGGTCATTGGAAGTGCTGGGGCGGGGAAATCTTGCCTCCTGCACCAGTTCATTGAGACCAAGTTCAAGCAGGACTCCAACCACACCATCGGGGTcgagtttgggtccagggtggtCAACGTTGGGGGTAAGACCGTTAAACTACAGATCTGGGACACAGCCGGACAGGAGCGCTTCAGGTCTGTGACTCGTAGCTACTACCGCGGAGCAGCAGGGGCGCTGCTCGTCTATGACATCACAAGCCGGGAGACGTACAACgccctgactgactggctgacagacGCGCGGACGCTGGCCAGCCCCAACATCGTCATCATCCTGTGCGGCAATAAGAAGGACCTGGACGCGGACCGAGAGGTAACCTTCCTCGAGGCGTCCCGCTTCGCACAGGAGAACGAACTGATGTTCCTGGAGACTAGCGCTCTGACAGGGGAGAATGTGGAGGAGGCCTTCCTCAAAACCGCCCGTACCATCCTCAACAAGATAGAGTCAGGTGAGTTGGACCCAGAACGGATGGGTTCAGGTATCCAGTATGGAGATTCTTCTCTGAGGCAGCTGAGACAGCCCAGAGGTACCACCGCACAGACCAAGCAGCAGTGTAACTGCTAGGGGCCGGACCTCACCCTCACTCTTCAGCCCCACTCCCACATGCACAGGACGTGCCCTAAAGctcGAGATGTTTTGGGATGTGCAGGACTCTTCCCCTTATCCCTTCTGAAACCACTTACACACGTACAGCATACCTTGACCAGTCGCCATGGAGATGACCTGCAACTCCTGACCATTGGTAAGAGACTATACTTCCTGCCAAGGGAGGTTACCCAGGCTCCTGGGTCCTAGGCTGGGAAACCCTGTGGTGTGAACTGTGCTGGGAACATAAGAAGAAGAGTCCATATCTGGGATGACTGTCAGGGTCAGGGGTTATGTGTAGGAGATTTCCTGTTTTTACCCTACCTTTGTGGTTTTTATCAAcacatgcttacacacacacacacacaccacctgtaACAAAGTCCATGAAGGATGAAATGCAAAACAAACTTCCTCATTCATACGCAGCCTGTTAGACTGCACTGTCAGGTTGCTTGATGATTGAAGTTCTTATGTTTTACCCATCACAGTGGGAGCACTCCCCATTCGTATGTCTTTATGAGCTGATTTTGAACCTTTGTTTGCACTGTACTTCTTATCAAGCCTGCTTGTTTACCTTCTGATAACCGGGGCAAACCTAAGTCTCCCCAACCCGAGCTTGACTGCTCTGCAACCCCGAAAAGAGCCATCAAGCATGAGCAGATATTGGGTCAGTTGTGAATGCTTCCTCAATTATTGTCCGTCCCATTTCCCTTGATTCTTCTCCCGGCTTCAGATGTACACTTGTAACTGATTCCACCGGTCTAAATGTTACCACATGTAACTCGACCTCGGGTATAAATGGTATTGATTCTAATCTAATGGACAACTTGTCCAAGGTTTGTTTTCAATTCATGCAATTGATCAAGTGGAGTACTGGCCTTACAGGAACATTTCTTGACATTGTAGATGTATACTGTCCCCGCAACCCCCCCCAGTCCACATGTTTCCGATCAGTCATTACTAGCACTCCCCAAAGGGAAATCGATTCACTCCATGAGGCAATCAGAAAGGCGCGCGGGTCATGTCCAAAGCACAATGGTGAGTAAAGGTTTCAGTTCAGTCTTATGGTTTTCCAAAGGACCCCTTGTTATTCCCTATTATCAGCTGCATATCTAATGTTACTGCTTGCCTTTGCGATGTAAAATGCTACACTCTTGTCTCGTTCTCCGGCTCTATCGCGCCCCTGGGGAGGCTATCTCTGAGAATCGTACCCCCATCTTGGCCCTCTTCATTTCTCTGCTGCTCTGAGTTCACATGTAAAGACCGGTCACCGGGAGCTAGACTGGTTTCAGTGTCACTAGTGGGAAATATTCAGGTTACAGGGCCAGGCGGCTGTCTAAGATTCAACTGCactttttgtttttacatgtCTTACACATTAAGTCTTGCCTCTTCCACCTATCATTTTCTGTCTGTCATATAGAATCGGGTTATGAAACGTTTAGAATTTCAGGCCCCATGTACCCTTACCTAATTCCTAAGCAATGCTACTGTTTGCACTCCACTAAGAGCAGGTTGTTACACTGAACCAGCATAGAGAAGATGGCTATCAAAATGCCACTGTGACATCATCCTGAGAAAGAATGGTTCcattttgtgtaaaaaaaaaaaaagtctgctttgttatttttgtttctcTTTTGCAAGTGCcacttttttttaattgagatttGTTTATATACTGTATCCATAGAATTGTAAGATTTGTATTGATTGAAAAATATACTGCAATAAAAAGAGCAATTGGAAGTTAGTCATTCCTTACTGAAGAACAACTGAGGGTTTTGTCCTTTCTCTCCAAGTGTTGACTGACCTGCCAGCCAGCTGTTCTACTTTCCCCTCTCCAGGGTTGTAGTAAAATGATTCCCTCTGCAATTTTATCTTGACCCATTTGTCTGCTGCCGTTGTAGGGACGATGTAACACTTGGGAGATTTACTGTGACTTCCTGAGCCCGTGTTCGTGTGCAGACCACAGACTGACCGCAAATCAGTCAGTCGGGTCTCACGACAGTAGTGCTGCACTCCATGCTGCTCGACCCTAATACCATTGAACCCTGGTCTCAATAATGCTGAGTATTCTATTGGCTGCATCGTAAGAACTTAATCTTTGGGCCATCGGCCTAATATTAACTTAGTCTGTCCTTAACGTCTCCTGTCTTTTCTCCACTCGGAACGGAGCAGAAACTCAGTTGTTGCTTAGTAACCAATGTGATGGAATCATTTTAAGAACTACTGTACATCTGAATAATCTGCTGTAAATTAATATTTGTCTATTGGATTGTTTTTGGCAGGGAAGGTttgcttgttcattttaaaggtCTATTCGTAATCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07880 RAB4B; Ras-related protein Rab-4B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340094 lncRNA upstream 3341 6790044 ~ 6790578 (+) True G2045703
TU2340087 lncRNA upstream 9289 6784214 ~ 6784630 (+) True G2045696
TU2340086 lncRNA upstream 9771 6783892 ~ 6784148 (+) True G2045695
TU2340084 lncRNA upstream 15126 6778505 ~ 6778793 (+) True G2045693
TU2340083 lncRNA upstream 16836 6776880 ~ 6777083 (+) True G2045692
TU2340627 lncRNA downstream 24538 6835574 ~ 6836599 (+) True G2046187
TU2340661 lncRNA downstream 111973 6923009 ~ 6923209 (+) True G2046220
TU2340662 lncRNA downstream 113906 6924942 ~ 6925160 (+) True G2046221
TU2340665 lncRNA downstream 117604 6928640 ~ 6928940 (+) True G2046224
TU2340666 lncRNA downstream 118071 6929107 ~ 6929372 (+) True G2046225
XM_021587421.2 mRNA upstream 59727 6725669 ~ 6734192 (+) True rhoub
XM_036965377.1 mRNA upstream 74655 6706664 ~ 6719264 (+) False rtn2a
XM_036965837.1 mRNA downstream 1813 6812849 ~ 6907589 (+) False arhgap35a
XM_036965836.1 mRNA downstream 1823 6812859 ~ 6907589 (+) False arhgap35a
XM_036965835.1 mRNA downstream 11435 6822471 ~ 6907589 (+) True arhgap35a
XM_036965631.1 mRNA downstream 125873 6936909 ~ 6974629 (+) False LOC110507056
XM_036965632.1 mRNA downstream 125875 6936911 ~ 6974629 (+) True LOC110507056
TU2340054 other upstream 73227 6719764 ~ 6720692 (+) True G2045665
TU2340040 other upstream 100875 6692544 ~ 6693044 (+) True G2045655
TU2339902 other upstream 298785 6494833 ~ 6495134 (+) True G2045522
TU2339435 other upstream 886680 5897517 ~ 5907239 (+) True LOC110507398
TU2339420 other upstream 897806 5893023 ~ 5896113 (+) True LOC110507397
TU2340813 other downstream 434770 7245806 ~ 7251575 (+) False G2046345
TU2340814 other downstream 434770 7245806 ~ 7251575 (+) True G2046345
TU2340853 other downstream 445595 7256631 ~ 7258230 (+) True G2046384
TU2342940 other downstream 1796457 8607493 ~ 8724303 (+) False si:cabz01090165.1
TU2344007 other downstream 2596589 9407625 ~ 9408571 (+) True G2049339

Expression Profile