RNA id: XM_036965632.1


Basic Information

Item Value
RNA id XM_036965632.1
length 3901
RNA type mRNA
GC content 0.58
exon number 12
gene id LOC110507056
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 6936909 ~ 6974629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgtgcgcatttgtgtgtgtttgggcgtgtgagtctgtgtgtgtgtgtgtctgtgcgtcaaTCTGTTGGTGCGcctgcgcgtgcgtgtgtgtgtgcgtgtaaatgCTTGTTCACGTGCACCCTCTGTGTGATTGTTTTGCAGATGCTCACTTGGGTGCGTAATGTGGACGTATTTGTTGGATAGACTTTGTATAAGACCAGGGAAACAGTTTacaatgtgtttgtatgtgatGGAATCTCCCACTTGCTTCAGttacacacaccctccctctctctctctctctctctctctctccctcccttccttccttccttccttccttctctccctccctctttctctctctcttttgcttgtCTTTTACTCTCCCTGCTAATCAGCATTTGAAAGGCAGCTTtgacagagaaagaaagtgagggGCTGCGGGAGGAGGGGGTAAACGAAAGcaagagacagtgagtgagagcgagcgagagagagagagaggaaaagggagggagagagagaccgaagcAAGAGTTGTACAACCATGCCTTTTATATTTACTAGCgactgagggggaagagagagtgagagagggtgaagagagagacaaCCGGTGTGCGCAGCTTTCCCAAGAGGAAATTAAAAGAAAGAAGCTCAgcgaagagagtgagagagcgagagagagagagagagagagagagaggaggagtgagagcgagagggagcatGCCggcgagagagcgagggagagagaatctCACGCTGGCTGTCTCCTAATCCTAGTCCATCTCTAAGAAGTGGCAGAGGGAGCAGAGTGTTAGTGAAGTGATCCTGAGCCAGCATAGCCTCTCTTCTCCACCAGCTAGCACCACttgcatactcacacacacacacacacacacacttgcaacgGATTCCGCGGTGGGTCCGCCTGCCTGTGTGTCCAGGTCTTTTGTGAGCGTGAGGGGATTGCCTCCAGTCGGTCCAGCCTCTCAGCCCAGCCCACCCCCAGTGCGTTTGGGAGCAGGGGACCCCAGCCGGGCCATTTTGGGGGGCACAGGAGTCTGAAGGATAGAGGACGAAGAGGAAAAAGTACGTCCACTCAGAGAAGGGGAGTCAACGCTGGAAATGCCCATCAGGGGGTCTGAGCCTGTCACAGCCTCGGCCAATCGCAGCCTCCGTTAGAGGTGGCGGCTGCATGTGATTGGAGGATGGCGACCATGCCGTTCGTCAGCGAGGGAAAGTGTGTGAGCGTGGAGTGGGACTTCCTACAGGGACTACTAGCCAAACCCCCCACCCTGCCCTGtttGCAGAACCTGCGGAAGGAGAAGTCTCGTAATGCCGCTCGCTCCCGTCGCGGCAAGGAGAACTTTGAGTTCTTTGAGCTGGCCAAGATGCTCCCTCTCCCCGGGGCCATCACCAGCCAGCTGGACAAGGCCTCGGTCATCCGTCTCACCATCAGCTACTTGCACATGTGCACCTTCGCCAGCCAGGGAGACCCGCCCTGGTGCCCCCTGCTGGAGGGAGAGAACCACTGCAGCAAAGTGCGACGCTCCTCCCACTCTCTGGCTACTGACATGTTTGAACAGCACCTGGGAGCACACCTGTTACAgTCTCTGGACGGCTTTGTGTTTGTGGTAAGCTCGGAGGGACGATTCCTCTACATATCAGAGACTGTTTCCATCTACCTGGGCCTCTCACAGGTGGAGTTGATGGGCAGCAGTGTGTTTGACTACATCCACCCAGCGGACCATGTGGAGATGGCTGAGCGTCTGGGCATCAGGCCTCACCTGAGGGCCGAGGCTGGCTGCCACGTGGCCCCCGAGAGCGCTTCCAGCTctgcctccacatcctccctgACCGGGACCCCCGAGCCTGCCCCCACAagccctctctctccagggaATGAACCGCCTGACCGAGGCTTCTTCATCCGTATGAAGTCCACCCTCACCAAGAGAGGCCTCCACGTCAAGTCCTCGGGCTACAAGGTGATCCATGTGACCGGGCGAATCCGCTGTCGCCCTGCCATGGTGCCAGGCTCCGCCCGCTCGGTGCGTCGGCCAATGGGCTTGGTGGCCCTTGCGCacacgctccctccctccacgcTGAACGAGGTGCGCATGGAAAGCCAAATGTTTGTCTTCCGGGTCAACATGGACCTGCAGGTCACCTACTGCGAGAACAGGATCTCAGAGTACATGGACCTGAGCCCGGCAGAGGTGGTGGGACACACCTGCTACCACTTCATCCACGTGGAAGACCTGGATAACATCAGACAGAGCCATGAGGACTTGTTGAGGAAGGGTCAGGTGGTGACCGGGTACTACCGTTGGCTCCAGAGGAGAGGGGGTTATCTGTGGGTCCAGTCCTGTGCCACCGTCTCCATCAACCACAAAGCCCCCCACGAACGCAACGTCATCTGGGTCAACTACATCATCAGtcgaaCAGAGCTCCCAGACACTCCCCTGGATCTGCTGCAGCTCCCAGAGAGTCTGAGGGCGGAGCGTCTGAAAGGCAGCTCCTCCCCTTCGGAACTCACGCCACAAGCTCGGGGTCCACAGCCAATGAAAAGCTCTGTGTGTAAAGGTGAGCCTGACTCTAAACTGAGAGAGATCTATAATCCCGGAGTCCAATCAGGGGACAGGAGGAAGCGTCCGCTGCGGTCTGACTCTGAAGGCGCTCCCCCAGAAACGCGGCGTCGCCTGGAAGAGTTCCgccagagagaggggagtgtgtCCGCCGCCTCAGACCTGGGcagcgagagcgagggagaggagagagcgtggGAGCAGGGGGGAGACAGCGCGAGGGTCAAACGAGAGGAGGGGCCTTCGAAACGAGGTGGGGAGACCCCAGTGAGGGGCGGCGGGGTGCACAGCGGCCGTGCGGTAATCCAGCACCTGAAGAGTGTAGtgtcctcacctctctctggtccccaCAACATCAAGACTGAACATGAGGCACTGGCTGCAGGGGgtcgctggacacacacacacacctcctcacacacacaacccccaccCTCGCATACACACACCCCTTGCGGCAGCCTGAACGGCGACAGTCCCCCGACCCCTATCCCGGACTCCTCCTCCAGCAGTGAAGCCCCACCCAAAGGTATTTTCACCCCGCCCTCCCCCgccatgtctcctcccatgtccGGCTCCTCCCCTCTACCCTGTGAGGAGCGGGGAATGTTGTCTGGAGGCCGGGGGGGCGGGCCTGACTTTGAGCTGTTGCAGAGACTGGCAGCGGGGGGTGCTGCAGGACGGGTGCTGTTCCACCCCCTGACCCTCGGCCCCCAGGGGCCACAGAGCCTGTACGCCCCCAGTACCATCCGCTATGCGCCCCCAGAGCTGCCCCCCTCCCACCCTGGTGCTGAGGGGCTGCGCGCCGACCACCACAAGGGCCCCCCAGCCTTCTTCCCCCACCTCCAGAGGCTGGCCGGCCTGCCCTCCTTCAGTGGGTTCTCCGCCTCGGACAATCCCTTCAACCCCTTCTGTATGAACGGACTGAGGGGGGCCACAGGGTCCGAGGAGGACTGAAAGAGAggaggggctagagagagagacatgggggtgCAGGACATTGGGACATATGGGGTTGGGAAACTGAAGAAAGGACCATTTGCACTGCTTCCGTGGGGGAGTCAGATGTGGACTTTGACACTTGATTTTACCCCACTAGCTGTCCAAGCTTTGTCCCCCTCTCTGCTCTACCACATCCTCTCTCCGCTGCTGTTAAATGACTGTGCAGTGTTCCATGTCTAAAGCCATATTGTACATAGAGACAGGGCCATGACATAGCTTCACTATTCCTTCCTCAGTATTATAACAACTGCTCCTGAGCCTGTCAGACTGACTTCTGTGTgactgaaagagaaagaaaaaaaaaaagggg

Function

GO: NA

KEGG:

id description
K09098 NPAS1_3; neuronal PAS domain-containing protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2340672 lncRNA upstream 1647 6934960 ~ 6935264 (+) True G2046229
TU2340667 lncRNA upstream 6289 6930399 ~ 6930622 (+) True G2046226
TU2340666 lncRNA upstream 7539 6929107 ~ 6929372 (+) True G2046225
TU2340665 lncRNA upstream 7971 6928640 ~ 6928940 (+) True G2046224
TU2340662 lncRNA upstream 11751 6924942 ~ 6925160 (+) True G2046221
TU2340713 lncRNA downstream 33927 7008556 ~ 7072971 (+) True G2046263
TU2340764 lncRNA downstream 84119 7058748 ~ 7059518 (+) True G2046310
TU2340779 lncRNA downstream 110059 7084688 ~ 7085163 (+) True G2046325
TU2340797 lncRNA downstream 122194 7096823 ~ 7097029 (+) True G2046332
TU2340782 lncRNA downstream 124323 7098952 ~ 7101037 (+) True LOC110507436
XM_036965837.1 mRNA upstream 29322 6812849 ~ 6907589 (+) False arhgap35a
XM_036965836.1 mRNA upstream 29322 6812859 ~ 6907589 (+) False arhgap35a
XM_036965835.1 mRNA upstream 29322 6822471 ~ 6907589 (+) True arhgap35a
XM_021587423.2 mRNA upstream 125875 6793919 ~ 6811036 (+) True rab4b
XM_021587421.2 mRNA upstream 202719 6725669 ~ 6734192 (+) True rhoub
XM_021587427.2 mRNA downstream 113419 7088048 ~ 7101257 (+) False LOC110507436
XM_036964808.1 mRNA downstream 133336 7107965 ~ 7133262 (+) True LOC110507437
XM_036964809.1 mRNA downstream 160893 7135522 ~ 7183437 (+) True LOC110507439
XM_021587433.2 mRNA downstream 222821 7197450 ~ 7209528 (+) True LOC110507440
XM_021587445.2 mRNA downstream 523361 7497990 ~ 7502256 (+) False LOC110507445
TU2340054 other upstream 216219 6719764 ~ 6720692 (+) True G2045665
TU2340040 other upstream 243867 6692544 ~ 6693044 (+) True G2045655
TU2339902 other upstream 441777 6494833 ~ 6495134 (+) True G2045522
TU2339435 other upstream 1029672 5897517 ~ 5907239 (+) True LOC110507398
TU2339420 other upstream 1040798 5893023 ~ 5896113 (+) True LOC110507397
TU2340813 other downstream 271177 7245806 ~ 7251575 (+) False G2046345
TU2340814 other downstream 271177 7245806 ~ 7251575 (+) True G2046345
TU2340853 other downstream 282002 7256631 ~ 7258230 (+) True G2046384
TU2342940 other downstream 1632864 8607493 ~ 8724303 (+) False si:cabz01090165.1
TU2344007 other downstream 2432996 9407625 ~ 9408571 (+) True G2049339

Expression Profile