RNA id: TU2341272


Basic Information

Item Value
RNA id TU2341272
length 3332
RNA type TUCP
GC content 0.47
exon number 4
gene id LOC110507059
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7182085 ~ 7411701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACATAGTGGCCTCTGTGTTTTACCGTTGTCATTATGTCCCTGCACAGTATTCCTATTCCGGACATACATATAACTGTTAGAACTGCTCATAACTGAGAACATTCAAGCTCCCTGCCTGTTGTAGACAGTGAACAGGACAGGGAGCGTTTGCAGAGAGAAGAATCTTTCCTTTCCGTTGATATTATTATGGTACTGTTTATTTTTGCTTTGGCTTCCTTGGTTATGCAATTATCTTGAAACGGTTTGAGACACACAGTGGTGCCACGTGAAGTGGCAGGCCTGTCTAGCCAATTGAAATCAGGGACTCCCTATCTCCAACCAATCACAGGAAAAACTGTGTGCATATTGGGCGGGGTCAGGAATCAAACTCTCCCCAACCTACCCTAACTTTTGCCCCACCTATTTGACTAATCAGACCGTCATTTACACCTGGTAATAACATGTGCCCTGTGATCAGATTTGTCTCAAAATGTCTACTCCAGCCCAATTTGATCGGGTATGACTGGACGTGACCAAAGATCCATTCCCAGGACACATGTTAATACCAGGACTAAAGGGAGGTCtcagattccccccccccccccccccccccccccccccccccccccccgactgccCATTGGTGTTTAATGGTGTCCATGACAAACAATTCAGAAAACGTCCACATTGCCTCCATCATAGCAGTGTCTGTCTACAGGTCTAGGGCCCACTCGAACCACCATGGCTTGTGATTTAGCACTTCCGGAAGACGAGTAGTCTCTAGTCTTCCCTAATAAGTCATCATCAAAAATGGTGTTGCACCAACCAGGACAGTTCCGTGAAtatttccctattttgttgcattacaacctgtaattgaagtagatttttatttggatttcatgtaatggtcATACACAAAAGAGTCCAAATTGGTGGAGTGAAAAAACAAAAAACGGAAAAGCTGTGtgtgcatacgtattcaccccctttgcaacgaagcccctaaataagatctggtgcaaccaatttccttcagaagtcacataattagttaaataaaggccacctgtgtgcaatctaagtgtcacatgatctgttacatgatctcagtatatatacacctgttctgaaaggccccagagtctgcaacaccactaagcaaggggcaccaccaagcaagcggcaccatgaagaccaaggagctctccaaacagatcagggacaaagttgtggagacgtacagatcagagttgggttataaaaaaaagatCAGAAACTTTGagcatcccacggagcaccattaaacccattattaaaaaaatggaaagaatatggcaccagaacaaacctgccaagagagggccacccaccaaaactcacagaccaggcaaggagggcattaatcagaggcaacaaagagaccaaagataactctgaaggagctgcaaagctccacagcggggattgcagtatctgtccataggaccactttaagccatatgctccacagagctgggctttacggaagagtggccagaaaaaaagccattgcttaaataaaaaaataagcaaacgcatttggtgtttgccaaaaggcgtaTGGGAGAAGATACTCTGGTCAGATTTagctttttgaccatcaaggaaagcgctatgtctggcgcaaacccaacacctcatcaccccgagaataccatccccacagtgaagcatggtggtggcagcatcatgctgcgtggatgtttttcatcggtagggactgggaaactggtcagaattgatggaatgatggatggagctaaatacagggaaattcttgagggaaaccggtttcagtcttccagagatttgagactgggatggaggttcaccttccagcaggacaatgaccctaagcatactgctaaagcaacactcaagtggtttaaggggaacatttaaatgtcttggaatggccttgtcaaagcccagacctcaatccaattgagaatctgtgatataacttaaagattgctgtacaccagcggaacccatccaacttgaaggagctggagcagttttgccttgaagaatgggcaaatatcccagtggctagatgtgccaagcttatagagacatactccaagagacttgcagctgtaattgctgcaaaaggtggcactaTAAAGTCTTGACTTTagtggggtgaatagttatgcacgctcaagtcctgttttttttgtcttatttcttgttgcacaataaaaaatattttgcgttttcaaagtggtaggcatgttgtgtaaatcaaattatatacAACCCCACCCAAaatcattttaattccaggttttaaggcaacaaaataggaaaaatgccaaggggtgtgaatactttcgtaAGCCACTGTATCAGACGACAGTTTTAAAAGGGGCAATCTTCGATTACTACATCCATTTCTGGCTTTGTTTTCTTTGCTGTCATTTGAACTGCAGATTTCCTCTGAGACCATGACACCCCACAAGCACTGGTCTGCTGCCTACAGTTATAAGCCTTTTATCTACCAGTCACAGGCACTAAATGACTGGTCTGCAGCAAACAGGTCTGACAGCACATGCAGGGCGATTCCACATTTGTTTATGGGTGGGTATAAGTTACGCATTAGTGGATCGATCGAGTccttaatgtttttttttgtctgtctctctccctctccatccccatctctctctctctctcatccaaaCTGACCTTTGCCATACTGCAGTTTAGACTGAATGAGCACACTGCAGCAGCGATATTCTACACATCCCCTGACCACTGGATACAGTATGTCCTTGTGGGATATAGAAGAGCAGTCTGTTAAACTCAAAGAGTTCTAGGGTTGAAGAGAGAGTGGTCAAGGATGGGGTCTGGAGATTGGACAGGCTTGGGCAAGAGTGGGACACCATTAGTAGACGGACAGGGGCGGGATCATGTCTATAGAAGGCGCTGTTCTACAGCTAAACCTCCCAGCCTCACCCTCCCCAGACCTCCAACTATCCATCCAGccagcccctctgtctctccactcGCTCCCCacactcccctcctcttccctgggTCAGTCTTGAGTCCCTTGGGCCCTCGTGGGTCCTGGTTCTGCTGGTTCTCCAGGTTCTCAGAGTATGCTGACCCTCTCGGTGAGTCCCTGCATGTCTGCATCCTCCCCGGCCTCATCGTCGGAGCCAGGCGCAGGCAGAGGGGGAACCAGGTGGGCCGGGTAGGGGAGCGTGTGCTCGCGGGCAAACATCTGCCAGCGGCAGTCGTCGCTCTCATGGGTGATGTAGCGCTCACCCAGCTTGGTCTCCAGCTCCCTCAGATCCAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2341290 lncRNA downstream 29646 7151267 ~ 7152439 (-) True G2046785
TU2341178 lncRNA downstream 73831 7106580 ~ 7108254 (-) True LOC110507438
TU2341174 lncRNA downstream 77061 7103528 ~ 7105024 (-) False LOC110507438
TU2341175 lncRNA downstream 77809 7103528 ~ 7104276 (-) False LOC110507438
TU2341251 lncRNA downstream 79444 7102424 ~ 7102641 (-) True G2046754
TU2341431 lncRNA upstream 115254 7422277 ~ 7422534 (-) True G2046922
TU2341432 lncRNA upstream 115614 7422637 ~ 7423184 (-) True G2046923
TU2341241 lncRNA upstream 129081 7436104 ~ 7442207 (-) False LOC110507442
TU2341239 lncRNA upstream 129619 7436642 ~ 7442207 (-) False LOC110507442
TU2341240 lncRNA upstream 129619 7436642 ~ 7442207 (-) True LOC110507442
XM_021587430.2 mRNA downstream 74344 7103511 ~ 7107741 (-) False LOC110507438
XM_036964807.1 mRNA downstream 74446 7103511 ~ 7107639 (-) False LOC110507438
XM_021587431.2 mRNA downstream 74450 7103511 ~ 7107635 (-) False LOC110507438
XM_036965633.1 mRNA downstream 153836 6992367 ~ 7028249 (-) False LOC110507058
XM_021587426.2 mRNA downstream 193903 6985640 ~ 6988182 (-) True tmem160
XM_021587435.2 mRNA upstream 129619 7436642 ~ 7442238 (-) False LOC110507442
XM_021587439.2 mRNA upstream 135634 7442657 ~ 7468560 (-) False fxyd6
XM_021587440.2 mRNA upstream 135634 7442657 ~ 7468560 (-) False fxyd6
XM_021587442.2 mRNA upstream 135634 7442657 ~ 7468560 (-) False fxyd6
XM_021587443.2 mRNA upstream 135634 7442657 ~ 7468560 (-) False fxyd6
TU2341171 other downstream 153850 6992383 ~ 7028235 (-) True LOC110507058
TU2340424 other downstream 674504 6502415 ~ 6507581 (-) True LOC110507418
TU2340423 other downstream 676137 6502415 ~ 6505948 (-) False LOC110507418
TU2340414 other downstream 690966 6489722 ~ 6491119 (-) True LOC110507421
TU2340276 other downstream 946563 6232615 ~ 6235522 (-) True LOC110507410
TU2341242 other upstream 135650 7442673 ~ 7468494 (-) False fxyd6
TU2341243 other upstream 135650 7442673 ~ 7468494 (-) False fxyd6
TU2341244 other upstream 135650 7442673 ~ 7468494 (-) True fxyd6
TU2341444 other upstream 198696 7505719 ~ 7510925 (-) True G2046935
TU2341843 other upstream 496860 7803883 ~ 7816187 (-) True LOC110507449

Expression Profile