RNA id: TU2341240


Basic Information

Item Value
RNA id TU2341240
length 494
lncRNA type sense_over
GC content 0.50
exon number 6
gene id LOC110507442
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 7436104 ~ 7442238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGACTGGAGTGCAGCTGACTGCAGAGACACACCTGAGAGGATCTCACACAGCCAGAGGAGCCCTCCAGCACCACAGCAACACCGGTGTCAAACCAAAAAGCATGCCACGCTACAATGAATGACTAGGGAGCCAACAAATGTTATTGTAGACACGGATGCAGCTTTTGTATATCTCTTACTCATTTCCTTCAtccggacagacagacacacagaccggCCATCATGTCCGCCGCTGGAGcTCCCGAGTACAACCCTGATGCAGAATTTGTGTATGACTACCAGACTCTTCGTATTGGAGGTCTGACTTTTGTTGCGGTCATCATGATCCTGTCTGTTCTCCTGCTGGCCAGCAACAAAATCCGCCAGTGTGGAAAGCCCCGGCAAAGAACGATTGAAGAGGTTCACCTACCGTAGGACGGCTGGGCTCTTGTATGTTGTTGACTGTATTGTGTGAGACTGCGTTCCTTTTTTATTGATAAACTCTAGACCCAC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2341432 lncRNA downstream 13458 7422637 ~ 7423184 (-) True G2046923
TU2341431 lncRNA downstream 14108 7422277 ~ 7422534 (-) True G2046922
TU2341279 lncRNA downstream 186505 7249722 ~ 7250137 (-) True G2046775
TU2341290 lncRNA downstream 284203 7151267 ~ 7152439 (-) True G2046785
TU2341178 lncRNA downstream 328388 7106580 ~ 7108254 (-) True LOC110507438
TU2341467 lncRNA upstream 70114 7512321 ~ 7512723 (-) True G2046958
TU2341468 lncRNA upstream 70779 7512986 ~ 7513348 (-) True G2046959
TU2341470 lncRNA upstream 71564 7513771 ~ 7513982 (-) True G2046961
TU2341471 lncRNA upstream 71911 7514118 ~ 7514373 (-) True G2046962
TU2341484 lncRNA upstream 89374 7531581 ~ 7569130 (-) True LOC110507447
XR_005039977.1 mRNA downstream 24941 7297244 ~ 7411701 (-) False LOC110507059
XM_036964922.1 mRNA downstream 24950 7251801 ~ 7411692 (-) False LOC110507059
XM_021587439.2 mRNA upstream 450 7442657 ~ 7468560 (-) False fxyd6
XM_021587440.2 mRNA upstream 450 7442657 ~ 7468560 (-) False fxyd6
XM_021587442.2 mRNA upstream 450 7442657 ~ 7468560 (-) False fxyd6
XM_021587443.2 mRNA upstream 450 7442657 ~ 7468560 (-) False fxyd6
XM_036965050.1 mRNA upstream 27926 7470133 ~ 7483382 (-) True LOC110507060
TU2341272 other downstream 129619 7182085 ~ 7307023 (-) True LOC110507059
TU2341171 other downstream 408407 6992383 ~ 7028235 (-) True LOC110507058
TU2340424 other downstream 929061 6502415 ~ 6507581 (-) True LOC110507418
TU2340423 other downstream 930694 6502415 ~ 6505948 (-) False LOC110507418
TU2340414 other downstream 945523 6489722 ~ 6491119 (-) True LOC110507421
TU2341242 other upstream 466 7442673 ~ 7468494 (-) False fxyd6
TU2341243 other upstream 466 7442673 ~ 7468494 (-) False fxyd6
TU2341244 other upstream 466 7442673 ~ 7468494 (-) True fxyd6
TU2341444 other upstream 63512 7505719 ~ 7510925 (-) True G2046935
TU2341843 other upstream 361676 7803883 ~ 7816187 (-) True LOC110507449

Expression Profile