RNA id: XM_036965591.1


Basic Information

Item Value
RNA id XM_036965591.1
length 4373
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110507457
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 8287448 ~ 8292186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAGATACTCAGATCTACACATCATCTCAATGTTCAATTTAGTCGGATTTAACAGACATCTAGGTGTACTGATTAGCGAATATGTGCGGTACTTAGTTTGGATCAACCCTAGTGAGAGAGTGTTTTGACCGACTTCCGGGTGCTCATGTGATTCTTTTTTTTTGCAGGACCAGAGGTGGTGTGGTGTAATGGCAAGTGACAAATACCAGATAGTGGTGCAAGGCGAGGCGTCAGAGACCGACTCAGATGATGAGGTATacatcacctccctctctccacattcAACAGCCGGAGGGCAAAAGGTACCAGGGGAAGCATCTGAGACTGACAGCgagggggaggttgagagagtACGTAAATGTGTCATTCCTGCAAGCTCTGAAAACCCACAAATATTACGCAAGGACTTAACTCCCCTGCTTGTGATCAGAGATAACCCTGACATTCCGTCTGCGGTAGAGGAGTTGGTTGTGTCTAGGCCTGAACACAGTGGGCTCTACTACAACACTTTACTCCAGCTGAAATTACAGGAGAGCAATGCACGTCTGTGCACGGATGTGCCCCAGACCATCAAACAGGTGTATGGTAATGCCACAAAGGAGATACGCATGGCCACAACCCACCTAAACAGCTCCCAGAACGGCATCATCAACGCCTCCCACAGCATCCGACTCATTCTGGACGACCTCAAGTCCGTCTCAGAGGAAATAGACATTATCACCAGCTGTTATCTACTCCCCGATATtaccatcccctcctctcccactacCCCTATTCTCGGACAGTGATGTgccacattcattgtttcatatgTATTATGTAGGCTAAACAATGGACTTGGGAGTATCGTTATTTGTAAAAGGCACTTGTATTAGGTGAATAAATTATACATGCCATTATACTATTACTGCTCCATGTTATTCAGATAGCTTATTCAGTGTAGTTGGCCATAAAGGATTGCTAATTGCTCTCGATCATACGTTCAAGTATTTAGCTGTTCACAAGCACATGAGATGTCTAGTCAATCTCTGTATTTTCCAATGCACCAAACCTTGTGTAGGCCTAGTGCATAGCCCACTCTTGTGGTGTCAGCAAGGCACTGCAAGGGATGCGACCGCTGTGGTCATTTTTTGCGTAGGCCTAGAGTTGAAGAAACTACAGAATCCCCATTTGCTAACGAAACAATGACAACATTGAATTCTAGGTTGTTATCATTGTGCGTTGCTGTATTCACATTTCAGTCATTGAACCGCAACTAGGCCTCTACTTTAGAGAACATTTGAAGAAATGGTTAATACAATTTAAGATACAGTGCAATCCTTCCAAAGATAAAAAAGTGTTACAAAATTGAAGATAATTTTTTTTATCCAATGGGATTCCGGGGGGTTTGATTAGCCATTATTTTTGCAGTCACTGACATTTCGGGTGAGACTGAGCATTTGGCATGGCACCCAGGAAGTGCGAACTGAAAGTGATCCATTCTCCCAAGGTCATCTGAAGGGCATGTCTGATCTcactagggctgggcggtataccgtattttactatataccggtttgggtttttactttaccttctataacggtatttttaatgtttggtttgttaaatgtgatatgctgtgtgtaacgtccatttttatagtttactccgctacttgagtcatccctccgctctctctctttccacgccgctttccacacagacctagtccCACCTCCTGTCACCTAAGGAGAGCATTTATTTTTGCTTGACCACGCGACACTTTCGTTCAGTCTgtatggtcaatgcagcacatgaacaatgttgatgacaatgatgttgtttccactttgatcttaatataaatccacatgcattctataattacaatattagtttgtgtttcttacatctgcaaacagctagttagTGTTTTCTTAGCAAGTTAAGCTAAATCGTGTTTTTTCACTAATGGTAATCGCTAGTTAGCTGGGtagtcagagcaaacgtagctagctagatCTCACTGCTGCTCCAATTAACTAGAGATGCTCCATCAAGTTGACTCCCTGTCAGCAGCTGTTGGtatttcattggcaagattaacTTTTCCATCCAGAGAACAATGCAGACATGACATTGTGTGACATATACACTcactggccagtttattaggtacaccaatcTAGTACCCGGGTCGGACCCCGCTTTGCCTCAAGAACAGACAGATGTTTTCGGACAATGGAAATGTTGCTcagttggtatcaagggaccaAATTTGTGCCATAAAAACATTTCCCACACCATTACGCCACCAGCCTGTagcgttgacaccaggcaggatggggtcAGGGACTCATGCTGCTAATGCCAAAACCTtgactgccatcagcatgacgtaACAGAACCTGGGATTTGTTggtccaggcaatgtttttccattcctcaattgtccagtgttggtgatcgcgtccCCACTGGAGttacttcttgtttttagctgaaaTGTTCCAccgggatgttggtccatgcggACGTGATGGCAtcacgcagttgctgcagattggatggCGGTACATTCATTCTGCAAACAGCCCATCCAGCTCTATTGGGTTGAAGTCTGCCCACTGCGCAGGCCACTCAAGTATTCTGAACTCGCTGTCATGTTCcagtgtttttccactcctcaattgcccagtgttggtgatcacgtgcccactggagccgcttcttgttttcagctgataggagtggaaaccggtgtggtcatctgctgcaatagcccctCCGTGACAAGGAACggcgagttgtgcgttccgagatttCGTTCTGCAACCCACTGTTATACTTtgccgttatttgtctgtttgtggcccgccagttagcttgcacgattcttgccattctccttcgacctctctctTCAACGAGCtgtttcgcccacaggactgccacagTCGCTCCATTATCGGTAACCCCTAGACATTGTCGTGTGTAAAAAGCCCAGTAGGGTgtccgtttctgagatactgggtCCGGGGCGCATGGCAtcgacgatcataccacgcttAAAGCTGTTTAGGCCTTTCTAACAGTATCTGAATGCCTGTcagcctgctttatatagcaagccacggccacatgactcactgtctgtaggaacgatgtacctaataaactggcagGTGAGTGTATTTTGAATGGTGCCATTGGACATGGTTGGTCGTCATTCTAATGGGCACCGGGGGTTAATGGAAAAGGTTATGGCGTGTGGGAAGTTACACCATTTGTGATTGCTCGCAAGGGACTGTACCGTATGCAGTCTGCTGCTATGAATGCCACGCTTGTGAGCTGAGCGCTATTAGCACACATCGCTCCTGAAACAGAACATTTCAAGGTCACTGACTTGCCATTTTTGCATGTTAACAAGTACACAATAGCAGCAGACTGAGGGAAACTGTCAAACAATTATTTTACGGGTGCATTGGGTTCTGTTGTGACTGATCTGTCTGATTTCAAAATTCATTTGATACACTGATGGACTTGGCTAAATGAGTTACGTAAATGCCATAATAATGATCTATGCATGAAACTGTATACTGACCTCCATGATACACTAGCTTAATAATTCTAACAGCATAAAGATTCTTATTTTTAACGTACCTCTTTGCAGATGTCCTCTGTGCATACTGATTACTGTTCCAATCCGCAGATGGCTTTGACTTGGCCCTGTCTCTCAGGCTGGTTCCTGCTCTAACCCAAGCCAGTTTTACTTTAATGGATTGGATCAGTTCAGACTGTGTACAGTCAACCTGGACAACACTGGAAGTCTACCTTAAGGAACCTTTCAGTCTCCAGATGATCTCTGAGCATAATTCATTGCATCCATGACGATGACTGTCACCCCTCCAGAGTTTATTATCCTTTTCATATGCACATGGTTCGCCATAAGATAAACATGAAGAGGGTTGCATTTGGTATACATGGCGTGTCATGCCTCATTTGTTAGCACCTTGACTTTCTTGGCACAGGTCTCCCAACGGACGCCTTTTTCTAGTGTCTCTGTCTCGCTTTGACCCTTTCCAGTGAACGGCACAAGGTTGTCATCAAGCCTACCCTTTTCAAATGCAGAGAACTTCCCAGCCCTGTGTTTTCCTCTCTTAATAACTTTCCACCAGTCAGACTCTAGATGGCTGTCAGTGAAGGTTTTAAAAGCTCTGCATTTGGAGTCAGGGAACATCTCAGGCTCTGAGAAAGGCATGGTGACCATCCTGTTTAGAAAGTCGTATGCGGCCTCTCGAGTGGCACAGCgttctatggcactgcatctcagtactacagacccgggttcgatcccaggctgtgtcacaaccggccgtgactgggagtc

Function

GO: NA

KEGG:

id description
K20186 BLOC1S3; biogenesis of lysosome-related organelles complex 1 subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2342302 lncRNA upstream 110182 8177001 ~ 8177266 (+) True G2047749
TU2342300 lncRNA upstream 111405 8175816 ~ 8176043 (+) True G2047747
TU2342292 lncRNA upstream 121500 8165744 ~ 8165948 (+) True G2047739
TU2342290 lncRNA upstream 130392 8156746 ~ 8157056 (+) True G2047737
TU2342142 lncRNA upstream 241720 8045448 ~ 8045728 (+) True G2047601
TU2342647 lncRNA downstream 109578 8401764 ~ 8402011 (+) True G2048081
TU2342652 lncRNA downstream 114709 8406895 ~ 8407118 (+) True G2048086
TU2342727 lncRNA downstream 172587 8464773 ~ 8465031 (+) True G2048160
TU2342748 lncRNA downstream 189886 8482072 ~ 8482296 (+) True G2048181
TU2342753 lncRNA downstream 193365 8485551 ~ 8485782 (+) True G2048186
XM_021587455.2 mRNA upstream 65012 8219844 ~ 8222436 (+) True LOC110507452
XM_036964692.1 mRNA upstream 756005 7518237 ~ 7531443 (+) False LOC110507446
XM_021587462.2 mRNA downstream 314364 8606550 ~ 8741529 (+) False si:cabz01090165.1
XM_021587463.2 mRNA downstream 496410 8788596 ~ 8791813 (+) True LOC110507459
XM_036965105.1 mRNA downstream 666220 8958406 ~ 9033108 (+) False LOC110507061
XM_036965106.1 mRNA downstream 666220 8958406 ~ 9033108 (+) True LOC110507061
XM_021587471.2 mRNA downstream 744782 9036968 ~ 9043679 (+) False esrrd
TU2340853 other upstream 1029218 7256631 ~ 7258230 (+) True G2046384
TU2340813 other upstream 1035873 7245806 ~ 7251575 (+) False G2046345
TU2340814 other upstream 1035873 7245806 ~ 7251575 (+) True G2046345
TU2340054 other upstream 1566756 6719764 ~ 6720692 (+) True G2045665
TU2340040 other upstream 1594404 6692544 ~ 6693044 (+) True G2045655
TU2342940 other downstream 315307 8607493 ~ 8724303 (+) False si:cabz01090165.1
TU2344007 other downstream 1115439 9407625 ~ 9408571 (+) True G2049339
TU2344344 other downstream 1495620 9787806 ~ 9788115 (+) True G2049657
TU2344911 other downstream 1986924 10279110 ~ 10282186 (+) False LOC110507067
TU2344916 other downstream 1986924 10279110 ~ 10282483 (+) True LOC110507067

Expression Profile