RNA id: XM_021587462.2


Basic Information

Item Value
RNA id XM_021587462.2
length 4395
RNA type mRNA
GC content 0.52
exon number 6
gene id si:cabz01090165.1
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 8606550 ~ 8741534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAATGAAGACATGGAGGTGGATAAAATGAGTTTCTCTCTGCAAGCTACTTACTTGGTCAgaaagtaggcctacattgagcGACGCGGAAAATATTTGCCGGAGGGATTGAGGAAGAAGGACATCGGACTGGGCGTGCCGCTGCAAGTCTCGAGCTGAGATTGCATCTCCACCCGCTCGCTCACCTAGAGGTGATCCACAGAAGCCATCCGGGCGAATTGTCGAGTAAATCATTCACCGTCGTTTGTCATTCACCCAATAACCTAATTGAGACGTATATCAAGCGACAGCTCTGTAATTCCTTGATAAAGGATATTCCTTCACATGATAGGCTATTGTTTTATTTTCAATAGATGGATAAAAAATGTTGGGTTTGTAGGAGGTTGTAGGAACCCAGCTATGGATTTTGGAGCAACGCTGGACACGCCTGCACCTTGTATTTTGGACAAAGTTAAAGGTTACTGCATAATCTTTCTCCAAAATGCACGAGTGATTGTTTTTGGATAAACGTACGGTCTGTTTCAATTCACTGGAGTGTGTTTCTAACAATTGTATGATTTCTTGGATATTTTGGGGAACGGAAAACATCAGGTTTCAAAATAACGTCGTGCCAGGGACCAATGGATAAATGTGATCAGCATGTTAGTCAATGACATTGTGCATTGCAACAAAGGTGGGAAGAGGCATTGCTACCCAGCACAGATGAAACCGAAGAGATTGACTAAAACCACCTTATAGTAGTAGCCTTCCAGTATTTCAATTATAGATTTGTTATTCCTGTGTGTTTTCCAGTAAGTGTTTGCTATACCTGTGACCGTTGGCGGTACCTGAAgcttgtctcctgtctgggtgtgCGTCTTTTCGAGCTCAGACATTTCCCTGCGCTGCCCGACTGGCGCTGCTATAGAGCAACCCTCCGCCGCCTCAGTTTCACCCTGGGCAAGAGCGGTTCCCTCTGTGTGAGGACAGAAGCGCAAAGTTGGACGCTGATCTCCAGGCACCGTGCGTAACGACAGCGGGATCTTTCGACTTTGAGGGACCGGAGAGAGGGCTCAAACCAAAAAGGCAGATTGGCAGGTGGCCCGAGCTGAGCCAATGACAGGCGGCCAGGAGTCTTAACGGCGGGCAGACTTGAGTCCAGCCAACGTAGGCTGTCCACATAGAGTGGAggctacccacacacactcacacacggatGAGAGCCCTGGCCGCCGGCTCGTGGACAACGCCAAGTGGCGGCTTCGCCTCCGCGTCTTTAAGGAGCCTAGCCATGGAGCGCCTGCTCCTGTGCCTGGCCCTCCTCGCTGCGCCCGTCGTCACCATGCTGTGCCCCAAGCGCTGCACCTGCCAGAACCTCATGCCCTCCTATACTGTTCTCTGCGCCAAGACAGGCCTGCTCTTCGTGCCGCCAAACATTGACCGGCAGACTGCCGAGCTGCGCCTCATGGACAACTTCATCACCACCCTTCGTCACCGTGACTTTGCCAACATGAGCAGCCTCATCCACCTGACGCTGTCGCGCAATACCATTAGCCAGATCAAGCCGTATGCCTTCGCCGACCTGCAGGACCTGCACGCCCTGCACCTGGACGCCAACCGTCTCACCATGCTGGACGACACCCACTTCCAGGGCCTGGTCAACCTCAGGCACATGATCCTGGCCAACAACCAGCTGCACAGCATCTCAGAGGGGGCCTTCCAGGACTTCCTGGAGACCCTAGAAGACCTGGACCTGTCCTACAACAACCTGGTGAACATTCCCTGGGAGACCATTGGCCTGCTGGCCAGTGTCAACACCCTCAGTCTGGACCACAACCTCATAGAGATGGTCCCCGAGGGCATCTTCTCCAACCTGCACAAGCTGGCGCGTCTAGACATGACCTCCAACAAGCTGAAGAAAATCCCTCCAGATCCCCTGTTCCTGAGGATCCCAGTGTACGCTAAGCTGAAAGGTTCTCCACTCACATCCCTGGTGCTGAGCTTCGGTGGGAACCCGCTGCACTGTAACTGTGAGCTAGTGTGGCTGAGGAGGCTGACCAGGGAAGACGACCTGGAGACCTGCGCCTCCCCCCGAGAGCTCGCCGGCAAGTATTTCTGGACCATCCGTGAGGAGGAGTTTGTGTGCGAGCCACCCATGATCACGCGGCACACCTCCAAGATGTTTGTGATGGAGGGTCAGGAGGTGAGCCTGCGCTGTAAGTCAGTGGGCGACCCAGAACCTTCCACGCATTGGGTCAGCCCCGAGGGGAAGCTGATTGGGAACACGTCCCGCACCCTCTGCTATGAGAACGGCTCGTTGGACATCCTCACCACCACTGTGAAGGACTCTGGGAAGTTCACATGCATCGCATCCAACGCCGCCGGTGAGGCCACGGCGCCCGTGGAGCTGGTGGTTAACCCCTCGCCACACTTTGACCCCAAGCTGGAGCCCGAACCTGGCCCCTCTGACATCCCCACATCCATCAAGTCCAACGCCAGCGGGGGCCACGCCCGCACTGACCATCAGAGAGTCAGTGTGTCAGAGCTGAGCTCGACCTCGGTCACCATCCGATGGCCCCCTCAGGACCACATTCCGGGGGTCCGTATGTACCAGATCCAGTACAACAGCTCCTCCGATGACATCCTCATATACAGgatgaTCCCTGCGTCTCATAAGTTCTTCCTACTCAGTGACTTGGCCACTCAACGGGATTATGACCTGTGTGTGCTGGCGGTGTACGACGATGGCGTCACGGCCCTAACCGGCACCCGCCTGGTGGGCTGCGTGGCTTTCACCACAGAGCGCGAGTATCGTCAGTGCCGCTCCCTCCACGACCAATTCCTGGGCGGAACCATGATCATCGTGATCGGCGGTATCATAGTGGCGTCCGTGCTTGTCTTCATCTTCATCCTCCTCATGAAATACAAGCTGCACAGCAACCATTACAAGCAGAAGGCGGCACATGTCAGCAACGTGTGCTCTCAGACCAACGGAGGCCAGGCGGCGGGCGGGGGAGGCCCTCCCATCCCCCCTTCCTCCTCAGGCTCGGCTAATAAGCCCATGCCTCCTGGCCCAGTGGACAGGGTAGGGCACGAGGGACCCCATCAGGCCTCGGAAGGGGGCTTCGGAGGGCCCTTGAAAGGGACCACCGTAGTGGACTTGAACCCAGACTACGGGAAGTCAGTGAAGGACCAGGATGCTATATCACAATAACACAGGATCTGGgacttccccaccccaccccctttTTATTTCCTGGTGCTGGGGTCCCTCTGCCTTACCAAGGATTATCTCGTGTCCAAGATTCGCACATCACCCATGCTCGTCTtctgaggtggagggagggagaatggaaaGGTAAAGTACCCCTGGTTCAAGGAAGTTGGAAAAACAAACTCACAAAAGAATACATATGAAGCCAAGAACAGCATTAGGAGTAGAGATGGGTGGATGCCATGGAATCGCTGTGTTCCGTCACTTATGCAATTCTACCTGGAACTGGGATGTAATCCAGCCCTGTGGAGTGGAGGGAAATTTATTCCAAAACCTGGGGCTTCTTTCACTGTGTGAGGAATGAGTTGACAACCCAGACGCCTCAAATTCCTTTCGGAATACTTTTTTGGGATTCTCATTGGAATTGCCTATTACAGAGGAACACCCTTGGATGGTTTTGATGAAATGTTGTGGGTTTCGTAATAAAGCTCCACTCTCCCTTAACGATCGGTCACATGCCAAAGGAATACAATAAGAGATGGCGATACAgtgttttgtccccccccccccccccccccccgagggcCTTGGAAGTGTTAGCACCCATCGATGTCACGTCGATGCACCAATATCAAACGGTTGTTCGGTGATCTCTAGGGCACTTTATAATCTTtataatcctctctctctctctccctctctctctctcactctctccctccgtctATATGGACAAGTGAATAGTATACTCAACAATTATGAGATAAAATGCATCCATTTTGGATGACGGTggaaaaaatataattatttggCCAAAAACATGGGCTCTCAAGATGAGGACAAAACAAAAACCTGGTTTGGTTTGATTACATGAACCTACAGCACAAGCAATGCCTTGTGGTTTGATGGTGAAATGGTGAGTTAAGTTTCATTCTGACACAAACTTTACAGAGAAGAAACTGACCTTATTGTATACCACTTGCCAATTGAAAAGATGGAACACGGATCAAATAGTCTTTTTCCCCTTACTGTTGACTGTGTATGTATTTGTATGTGAGATACACCTTCAATCTTCTCTGATTTGATACCCATATTTCCTTTGAATTATGAAGCAACAATAAGAAAAAAACGTGAGATGGAATTTTATGCTTTCATAGGTCAAATATGTGGATTTATAAAGAAATAAAATTATTTTTCTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2342797 lncRNA upstream 65718 8523125 ~ 8540832 (+) True G2048227
TU2342753 lncRNA upstream 120768 8485551 ~ 8485782 (+) True G2048186
TU2342748 lncRNA upstream 124254 8482072 ~ 8482296 (+) True G2048181
TU2342727 lncRNA upstream 141519 8464773 ~ 8465031 (+) True G2048160
TU2342652 lncRNA upstream 199432 8406895 ~ 8407118 (+) True G2048086
TU2343101 lncRNA downstream 67282 8808811 ~ 8809291 (+) True G2048524
TU2343254 lncRNA downstream 72206 8813735 ~ 8814002 (+) True G2048669
TU2343269 lncRNA downstream 82132 8823661 ~ 8825625 (+) True G2048683
TU2343419 lncRNA downstream 167792 8909321 ~ 8909563 (+) True G2048803
TU2343422 lncRNA downstream 169845 8911374 ~ 8911576 (+) True G2048806
XM_036965591.1 mRNA upstream 314364 8287448 ~ 8292186 (+) True LOC110507457
XM_021587455.2 mRNA upstream 384114 8219844 ~ 8222436 (+) True LOC110507452
XM_036964693.1 mRNA upstream 1075107 7520833 ~ 7531443 (+) False LOC110507446
XM_021587463.2 mRNA downstream 47067 8788596 ~ 8791813 (+) True LOC110507459
XM_036965105.1 mRNA downstream 216877 8958406 ~ 9033108 (+) False LOC110507061
XM_036965106.1 mRNA downstream 216877 8958406 ~ 9033108 (+) True LOC110507061
XM_021587471.2 mRNA downstream 295439 9036968 ~ 9043679 (+) False esrrd
XM_021587472.2 mRNA downstream 295453 9036982 ~ 9043679 (+) True esrrd
TU2340853 other upstream 1348320 7256631 ~ 7258230 (+) True G2046384
TU2340813 other upstream 1354975 7245806 ~ 7251575 (+) False G2046345
TU2340814 other upstream 1354975 7245806 ~ 7251575 (+) True G2046345
TU2340054 other upstream 1885858 6719764 ~ 6720692 (+) True G2045665
TU2340040 other upstream 1913506 6692544 ~ 6693044 (+) True G2045655
TU2344007 other downstream 666096 9407625 ~ 9408571 (+) True G2049339
TU2344344 other downstream 1046277 9787806 ~ 9788115 (+) True G2049657
TU2344911 other downstream 1537581 10279110 ~ 10282186 (+) False LOC110507067
TU2344916 other downstream 1537581 10279110 ~ 10282483 (+) True LOC110507067
TU2344952 other downstream 1647472 10389001 ~ 10390901 (+) True LOC110507523

Expression Profile