RNA id: XM_036965105.1


Basic Information

Item Value
RNA id XM_036965105.1
length 8349
RNA type mRNA
GC content 0.54
exon number 39
gene id LOC110507061
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 8958406 ~ 9033108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgactaaaatgaatAAACCAATTGCTTATTGAATCTTATTGATACTATTTGAGTGTGCTGTTGCAAATTGGATTATTGTTAAACGTCCTCGAGGATGCTGGCAACCTCGACACAGGGCAGACTCTGATGTAGGCTGTGGTGGTCACCCCTCTATTTCCATGTCTATGCGCTGGTCCTACACATATCTGATTGGCTGTGCTGTCCTTATATTTTAGAACTCCTATCCCATTGGCTCAAAGTTTTTAAGGCGAACTTTAAACCGACTTTACCATTTTCTAATGGGGTAGGCTCCGAATAATGCAAGAACTAATAGTGGAGTCTGAAGAGTCGAGTTTATTTTCTATTTGAAAAGTAAATGATCTAGCCTATTAACTGCATTTGCAAAAATAGGCCAAACTAAGACATGTGCTCAAATTGTATATGATTGTTTTGTTTTGGCTCACCTATTGCATAAAATAGTTTTCTATTTCTtagtttttaaattgtatttttcttttAACAATTTCCTGGTGATTCCGTTGCAATTGGATTATTTATAGGGTCGATTTGTAACGCAGAAGAGACTTCTAAAGATGTCAAGCAGGAGATATGCTAACTTTTTCGTTCTTGGAGTGACATTTCTTGTATTTCTTACATTTTCGAAATGTGGGACACTAGTGAGGCGTTCAGCCCGTAAAGGGCACGAGATGCAGAGGCGAACGGCGGGCAGGTACCAACACGCAACCGTGAATGATCAAGTTTATCAGACTCAGTGGAGAATGACGACGACTTCAAAACCCAAATTAAAACAGAAACAGTACCATTTTAATGGAAAGAAATACTGGAAATACGCAACTAATGTCACACTTCAGTTAAATGGGACTAACGTATGTGGAAACAGGTGCTGCCACGGATGGACCGTTTCACCCAAGACTCAGAAATGCACCAAACCAAGATGCCTTCCACGTTGCCACAACGGAGCCGTGTGCAGGCAGCCCAACATCTGTGAATGCCGAACGGGCTTCTACGGGGCCCGCTGTGAGTTTGCAAGCGTGACCTATGGCCTCGTAGGCCTACCCTGGGCCTTCCTGCGCCCCACCAGCCCCATggtcagcaccaccaccaccctttCACCAACCACCACCCTCTCACCAACCACCGTCATCCCCAACACCACCCCAGTGCCCACTGAGACCACAGCTGCATGGAGGACAGAGGGGACACCAGTCAGCACTGTGCGCTGGAAACCTCTTACTCTGCAGGAGGCTCAGTCAGTGCTGCTAAAGAAGGCATTGGCCCGTGGGGGCCGAGGCGACAAGATGACCTCCATCCTGATGAAACAcattgagacagagaggaagaagctTCAATCAGCCTCACCGTCAGACCTACAGGACACCCGGACCACCAGTGTCAAGAGCTTCCACACCCAGAAGGGCCAGTACACCATCCACGTGAGCCCGCCTGCAGCCAGAAACCAGACCGCCGGCCACCGAGGAGGAACGGCAGCAGGGGCAGGAAGGAGAGGAGCTGAGCGCATCAAGGTGCTCTTCACCCCGACCGTCTGCAAGGTGCGCTGCACCCAGGGACGCTGCACCAACTTCTGCGAGCAGGGCAATGTGACCGCCCTCTACATCAGTGAACAGGGGGACCGGGCTGCGCTGGGACCGGGCTTCAGAGTCTtCCTGTGCCCCATGTTGTGTCAGAACGGAGGGGTCTGCATCCAGAAGGACCGCTGCCTCTGCCCGCCAACCTTCACCGGCAAGTTCTGCCACATCCCCGTGGCCACGCCCTCCACCAATGACATTGAGAAGCCTCCGCGCAGCCCCTCGGTGCTGGCCAGTCAGCAGCTGCTGTCCCAGTCGGAGTACATTCTCCCCCtgcagagccagcagcagagccACAGTCAGCCCAGCGGTGcatCTGGTTCATCCATGGTGAAGGTGCGGGTGCAGCACCCACCAGAGGCCAGCGTGAAGATCCACCAGGTGCTGAAGGTGGGCTATGGGCCAGGCACGGTTAGGGAGCGGTCGGAGACGGTCACCTGGTCAGCAGGCCTCTCGGGGGCCAGCACCAGTGTTCTGCCAGGGGAGAGGGCCGCAGCCACACCACCTAAACCCAGAGTCCAGGCCCAGACCCTCCACGGTAACTCCACCAACACAGAATCTTCTGTGTTCAAGTACTGCTTCAGGGAGGTCCGCAACGGCCAGTGCATCTCACCTCTCCCAGGACTCAGGAGTCAGGACACCTGCTGCCGAGGGATTGGATTGGCCTGGGGCATCAACGAGTGTGTCCTATGTCCCCCTAACACAGGAAATGGAGTCGATGGGAGCTGTCCGGCTGGATTTGAGAGGATCAACGGCACCCAGTGTGTTGATGTTAATGAGTGTTTGCAGCCAGGCTTCTGTGAGAACGGCAACTGTGTGAACACTCGAGGGAGCTACAGTTGTGTCTGCAGGCAAGGATACATACTGGACGCCTCTCACGGGATCTGTATCTCCCATAGGGTGATCTCGGAGGATAAGGACCAGTGCTATCGTATCCTGAACTCTGGCTCTGGCCGTGGTAGCTGCTCCGTGCCTATCCTTAGGGACATCACCAAGCAGATCTGCTGCTGCAGCCGCGTGGGCAAGGCCTGGGGAGAGAACTGTGAGAGGTGTCCCTACTTTGGATCAGTTGCTTTCAAGGAGATCTGCCCAGCAGGGCCTGGCTACCACTACTCTGCCTCTGTCATCCAGTTCAACCAGAGGTTGCTGGAGCAGCACGGGACTGGAGGTCCCCCTGTCATATCCCAGAGCACGGGACAAACCAGGCCACAACAACCAGCCAGTAGTGGTGCACAGACTCCCCAAACTAGTCACCAACAACCAGGTATCACTACTCTGCTCACCACTCCGACTAGACCCCAACAGCCAGGTGGTGGCTCTCTCACGCTTCAGACCAGACCCCAGCAGCCATcagtggagcagtggagcagtggagGCTCCCTGTCCTCCCAGGGCAGACCACACATTCCAGCCAGCTCTGTTACAGCAGGACCCACCCAGGTGGTGACCGCTCGGCCCCTCACTCAGACCCAATGGCCTCCAGTTGACCGACGGCCAGTATCTCCAGTGAGACCTGCCCAGCCCCTCCCACCTCTGGTCACGCCCCGCCCACCCATCCCCAGGCCAGTGCGGGGTGTGTGTGAGACCATGCCCCAGGTGTGTGGACAGGGCCGTTGTGTGAACCAGCCCGGAGGGAGACATACCTGCATCTGTAACGAGGGATACCAACTCAACGCTCAGCAGATTCGGTGTCAAGACATAGACGAGTGCAGGGCGTCTCCCCCGCCCTGCGGCAGCGGCCGCTGCCAGAACACAGAAGGGGGCTACAGGTGCAGCTGCCCCTCTGGATACCAGCCGGGACCCCGGGGCACCAGCTGTAAAGATATTGACGAGTGTCGTCAGGTTCCGAACCCCTGTAACAACGGCCGCTGTGAGAATAGCCCTGGTAGCTTCAAGTGTGTCTGCCGCACTGGGTACACGCTAGAGGGAAACGCATGTAAAGATGTGGATGAGTGTGAGGACCCCTTGAGGTGTCCTGTTCAGGCCTGTGCCAACTCTCCAGGATCATACAAGTGTGTGTCTTGCCCGCCAGGCTTTGGCCTGCTCAACGAACAATGCTCAGATGTTGACGAGTGCCATCAGACCCCCAGCCTTTGCACCAATGGTCGTTGTGAGAACACTCCTGGGAGCTACAGGTGTGTTTGCCACACAGGATACAAACTACAAGGCAAGACCTGCACAGATGTGGATGAGTGTGAGGACCCTTTGAGGTGTCCTGGTCAGGCCTGTGTCAACTCTCAGGGTTCTTACAACTGTGTGTCCTGCAAGCCAGGCTTCAGCATGATCAATGGACATTGCTCAGATATAGATGAGTGTCGTCAGACCCCCAGCCCATGCACCACCGGTCACTGCGAGAACACCCAGGGTAGCTACAGCTGTGCGTGTCTCACTGGCTACAGACTACACGGTGATACCTGTACAGACGTGGATGAATGTGCAGACCCATCCCAGTGCCCTGGCCAGGAGTGTGTCAACTCCCTGGGCTCATACAAGTGTGTGTCCTGCAAGCCAGGCTTTGTGCCGGTCGACAGACACTGCACAGatgTTGACGAGTGCCTCCACAGCCCCACTCCCTGTGCTAACGGCCGTTGTGAGAATACGGCTGGGAGTTACAAGTGTGCGTGCCGTTCTGGCTTCAGGCTACAGGGCGACACCTGCGGAGATGTCGATGAGTGTGAGAACGCTCTGCAGTGTCCTGGTCGGGAGTGTATCAACTCTGAGGGCTCCTTCATATGTGTGGCCTGTAGCCCAGGCTTTGAGGCTGGAAACGGACAGTGTACAGATATCGATGAGTGTCGCCAGACCTCCAACCTATGTGCCAACGGTCGCTGTGAAAACACTCCGGGTAGCTACCGGTGTGTTTGTCGCACCGGGTTCAAACCGCAGGGCAGCATCTGTATTGACCTGGATGAATGTGAAGACCCCTCACAGTGTCCTGGGCAACGGTGTGTGAATTCTGAAGGCTCCTACAAGTGTATCGCCTGCAAAGCGGGCCACGGCATGCGAGATGGGTTATGCGCAGATGTGGATGAATGCCAGAGCCCTGACACCTGTGGTGCAGCGAGGCTGTGCGTGAACACGGACGGCTCCTACCGCTGTGACTGTCAGCCAGGCTACAGAACCGCTGGCCCCGGGCGCCAGTGTAGAGACGTCAACGAGTGTCTAGAGGGGGAGTACTGCTTCCCCAGGGGAGAGTGTGTGAACACAGAGGGCTCCTACCGCTGTGTGTGCTCCCAGGGATACACCACCAGCAGCGACGGCGGCTCCTGCCTGGATGTGGATGAGTGTGCCAGGTCAGGCCCGGGGGCGTGCCAGGATGGCCGCTGTGTCAACACAGAGGGCTCCTACCAGTGCCAGTGCCAAGTGGGATTCACCACCAACCCAGAGAAGACAGCCTGTCTGGatgTAGATGAGTGCTCAGAGGGAGCAGTGTGTCGGTCACAGCGTTGTGAGAACACCGTTGGCTCCTACCGCTGTATCACCTCTTGTGAGCCGGGCTACCGGGTCACCCGCACCGGAGAGTGTGTCGATATCAATGAGTGTGCCAATGAGACCGTATGCGGGGAGCATGCGTTCTGCCAGAACCTAATTGGAACATACCAGTGCATGTGTGACCAGGGCTACACAGCCACCAGCGATGGGAAGGGATGTGTGGatGAAAACGAGTGTGAGACTATGCAGGGCGTGTGTGGCGCGGCGCGCTGTGAGAATGTGGATGGCTCCTTCATGTGTGAGTGtccaggagagggggaagagtttGATACGCGCTCAGGACAGTGCCTCAGCACTCCCCGACCAGGTCGTCTGGCGTACCCTGGCGGCTCCTCCTCTTCTTCGTCTTCCTCCACCACCGGTCTCGGTCCCCAGCGTCGGCCCGATGCGTCCCAGCTGCCCCTTGCCCGGCCTGGCGAGTTCAGGGAGTGTTACTACAGCACTGGGGAGCAGAGCTCGTGCAGCGTCCTGGCCCGCAACACCACCCAGCAGGAGTGCTGCTGCACCGTGGGCCAGGGCTGGGGCATGGGCTGCCAGTATGACCCCTGTCCTCCGCTAGGCACAGCTGAGCACCAGGCGTTGTGCCCCAGCGGACGAGGATATGTTACCGGGCCAGGAGCATTTAGCTACAAAGaTGTGGATGAGTGTAAACTGTTCCACCCTGAGGTGTGTAAGAGCGGTGTATGTGTCAACAACATCCCTGGCTACTCCTGCTACTGCACCATTGGCTACTACTACGACGATGTGTTTCTGGAGTGCATCGaTGTTGATGAGTGTGAGGCAGGGGAGGACAGCTGTCCAGGGGGAATCTGTGTCAACATATTAGGCTCACACGTCTGTACCTGCGAGCCTCCTCTTGTGTTGGACGACACTCAGCGCAGCTGTGTCAATTCCACTGACCTCGCCGTGGATGAGAACCTATCGTTCTGCTGGCAGTTTGTCACAGCAGACCTGGTGTGTCAGAGCCCCCTGCTGGGTGGACAGGTCACCTTCACTGAGTGCTGCTGTCTGTATGGAGAGGGCTGGGGACTGCATTGTGCTCTGTGTCCTGCCAGAGACTCAGagGACTATGAGGCTCGCTGTAACGTCTTCCTGGGGCCCCCAGAGTTTCCTCCCCCCTTCCCTGACCCCTACGGGCCGGACCCAGGGCCAGGACccggcagaggaggagagggagaaggaggagtgggGTATCGCGTGCCCTATGGACCGGACTCCTTCCCAGACCCCATCCCCCGCAGGCCTGAGTACCCCCAGCCTGACTATGACGACTACACACCAGCGGGAGGCAGCAGGTCTAGCTTCAGAAGCAGAACGCCCAGCACCTTCAGCGTCCCAGAGAGCCCATACAGACAACCCTCAGGATACATTCCTGAGCGTTACTATGACGAGGACGACTACGGCCCGCCTGACGCTCCTCCGAGACCCCATCTCCGGACCCTCCCAGACCCTCGTTCTGAGCTTGCCTTTGGGGCGcgaccccctccccccatccgaGAGGGCCTCCCTCTGAGTCTGGCCCCCCTCTTGGACAGTGACCCCtacagtgaggaggaggaggggccagAACCCTGGCGTGTGGGACCCCCTTTCCCTCCGTTCCCTGACAGACAGGggccaggtggtggtggtggcccaCGGAGAGTCTATGAGAGACGATATGAGCCGTATGCAGGCCTGAGCACAGAGGACTGTGGGATACTGCACGGCTGTGAGAACGGCAGGTGTATCCGGGTGGCGGAGGGATACACGTGTGACTGCTACGAGGGCTACGAGCTGGACATGACCTCCATGGCCTGCATAGACATCAATGAATGTGTGAATCCTGACAACGCGTGTGCGAACGGCCGATGCATCGACACAGACGGCTCCTATCGCTGTGTGTGCCACCGGGGCTACGTCATGTCCCGCCGGCCCAACCACTGTGTGGCAGCATAACACAGCTACTACATTGTCTTCCCCCACTCATCAGTCCTATCTGCTACCGGGGAAGTGTTCCCTCTGTCCTCCACAGGCCCCTGAGAGGGTTGTTCTCTGAAGAAAACGGCGACGTAACTGACGCACAGTGTCTGAGAGAGATTTGAGTCCAAAGAACTCTGATATTAATACGGTTTGAGTTCTATACAAGCACACACAACTCATTATATATACACATGAGCTCAACCAAGCACATACACTCGAGACTGCTATTATAAAGCAGGTAAATAAATATGTCCATTCGCCAAACCCTTTCCTTTGATGTTGAAATGCGTAGTGGTGAAAAAGAGGTTAACGTACATTGTGCAGAATCCTAACGATACGAACACGTATCTAAAGGTAGGATCCGGCCCATTGAGATGGCTCACTTTGAGCTGAATCATGATCAACACACCGTGTTCTTCTGCCTCGACCCTGAGGCAGACGGGAACCATTGAATGGGGCCAGTGTAGTCTCTTAAGACAAAGATGACAAGCTACTGCTACTGACGAGCAGAGCCTTTGTCTAAAGGCAGAATCTCTGTCTGTGGATGTTTTGTTAACGAACGCTCTCTTTAGCTGGAATGTACAGGGAAACACAGCAACATCACGACATCGCTGAACCAAATGTCTATCACTCGAAAATGTCAGTGACTTGTAATTCTCTCCATTTGTTGATTTTACAAGCCCGCCGGTGTTTGTTTTTGTGATTGCTTCTTGTATTAATTTATGCTGTTTAAAGTTAAGTTGCTCTTTATGTAATGGTAACTTGTATTATTTTATAGAAATGTATATGCGGACGAGGAAGCTACACGTCACTGACGTGTCTGTACATTTTATTTCTTTAGACTTTTGTAGCcaaatttgattttttttcttctttttcatCAGAATCGAATGTACCTGAAAACTGTTATAAGATAGTTGACTTTTGTATTCACAATTTGAAATGTTGTTTGTGTGATCAAAACACAATCTGTGATAAAATACCATGTACATATTTACAATTGAGAACGTTTTTTACCAAATGGTATCTGTTCCAGTGAGTAGAACCTTCTCTGTAAATGTCTCTACTTCCTGATGTAGTTTACAAGCTGAAACAAACCCGAAAGCATTTCCACCTTTCAGCACCTAAAGATGTATAACACTATGCACTGTATTTGTGGATGACGTAGCTCTTGTGTACTTTTTACTCACAACtttgtacattttttaaatttgtttcTGGAATTTGTTAATTGTTTTGTCAGTGATTTTTTGTATCATTATTGCTATGAAAACGATTTGAAAATATATTTGCACACTTTCCATTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2343476 lncRNA upstream 4310 8953773 ~ 8954096 (+) True G2048859
TU2343422 lncRNA upstream 46830 8911374 ~ 8911576 (+) True G2048806
TU2343419 lncRNA upstream 48843 8909321 ~ 8909563 (+) True G2048803
TU2343269 lncRNA upstream 132781 8823661 ~ 8825625 (+) True G2048683
TU2343254 lncRNA upstream 144404 8813735 ~ 8814002 (+) True G2048669
TU2343499 lncRNA downstream 24022 9057130 ~ 9061110 (+) True G2048873
TU2343553 lncRNA downstream 35389 9068497 ~ 9068744 (+) True G2048924
TU2343554 lncRNA downstream 35934 9069042 ~ 9069300 (+) True G2048925
TU2343555 lncRNA downstream 36718 9069826 ~ 9070122 (+) True G2048926
TU2343571 lncRNA downstream 64330 9097438 ~ 9098286 (+) True G2048942
XM_021587463.2 mRNA upstream 166593 8788596 ~ 8791813 (+) True LOC110507459
XM_021587462.2 mRNA upstream 216877 8606550 ~ 8741529 (+) False si:cabz01090165.1
XM_036965591.1 mRNA upstream 666220 8287448 ~ 8292186 (+) True LOC110507457
XM_021587455.2 mRNA upstream 735970 8219844 ~ 8222436 (+) True LOC110507452
XM_036964691.1 mRNA upstream 1426963 7520850 ~ 7531443 (+) False LOC110507446
XM_021587471.2 mRNA downstream 3860 9036968 ~ 9043679 (+) False esrrd
XM_021587472.2 mRNA downstream 3874 9036982 ~ 9043679 (+) True esrrd
XM_021587473.2 mRNA downstream 90488 9123596 ~ 9126312 (+) True LOC110507468
XM_021587474.2 mRNA downstream 94923 9128031 ~ 9130735 (+) True LOC110507469
XM_021586943.2 mRNA downstream 176646 9209754 ~ 9212063 (+) True LOC110507063
TU2342940 other upstream 234103 8607493 ~ 8724303 (+) False si:cabz01090165.1
TU2340853 other upstream 1700176 7256631 ~ 7258230 (+) True G2046384
TU2340813 other upstream 1706831 7245806 ~ 7251575 (+) False G2046345
TU2340814 other upstream 1706831 7245806 ~ 7251575 (+) True G2046345
TU2340054 other upstream 2237714 6719764 ~ 6720692 (+) True G2045665
TU2344007 other downstream 374517 9407625 ~ 9408571 (+) True G2049339
TU2344344 other downstream 754698 9787806 ~ 9788115 (+) True G2049657
TU2344911 other downstream 1246002 10279110 ~ 10282186 (+) False LOC110507067
TU2344916 other downstream 1246002 10279110 ~ 10282483 (+) True LOC110507067
TU2344952 other downstream 1355893 10389001 ~ 10390901 (+) True LOC110507523

Expression Profile