RNA id: XM_021587607.2


Basic Information

Item Value
RNA id XM_021587607.2
length 3785
RNA type mRNA
GC content 0.51
exon number 26
gene id LOC110507553
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12282318 ~ 12303781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTTTCTGCGtgcggagggagggagtgggtgaCACAGATTTAACCCCTGAAGCGTGGTCAGTCGATTCAACAGATGCAAACAACGTTCACTTTACGATACTCGAAATAATCAACACTATACAGGCATATGTCAACCTAAATGATAAAATGCGGATGACATTAGCTGTAAAAAAACGCGGACATTAAATCATTCGGGATCTAGCTAGCGAGTAGTAGCTGTGTTGTTAttgtctagctaacgttagtttacGTCGCAGTACCGAGGAGTGGTTAGCTTGCCAGCTGGTGATGGTGAAACAGGAGGAGCGTTGTGAATGTAATACATTAATCATTAGCAAGCaaatgtagctagctggctagattACCTCACTAGCTAGTCGTTCGCAATCAACTGTTCTGTTGTTGTGAATGATACATTACAACTGAGCTCTAgtctagttagctaacgttaggtagGTTTGCCATTCATTTCTATTATTATCATCCAACGTGTCAGTAAGTGCATTTAGGTCGTTTTGATCAGCTAGCACAGCTATTGTTGACAAATCGCAAGGAAATGGTTTTGAGGAGCTGTTGTAAATTTGGCCCCGTTTCAGTCTTGTTCCGGCTTGGTTATTTGGCCCTGTTGTTGTTATGTGTGACCCACTTGCGGTGCGCACGGGCAGAAACTAAAACGGTGGTCCAAAAGGATGCAGAGTTTGATGTTACCTACAACGATACAGTTACGAGTGACAACCAAACCATCTACGCCTTCAATCACACCGTCTCCCGAAACAAGACGGAGGGGGTCCGTGTGACTGTGGATGTACTGTCGGAGGGGGCAGAGAGCAGTCCCATCCTGTTTGTGGTCAGACAGAAGCAGGCCGTGCTGTCCTTCCAGGTCCCCCTCATACTGCGTGGACTGTACCAGAGGAAGTACCCCTATGCCCATGTGGGCCGAACGCTTTGCCAACCCCCCACCCGCACCCTCTCCGAGACCCAGTACTTCTTTGTGGACGTGTCCACCCTGTCCAGCTTGGGCACCCACTACCAGCTAAGGATCAGCCGCGTGGACAGCTTCACCCTGCATACAGACAAAAAGTTCAGCTTCACTGCCTCACCATCCCAACCCCAGtACTTCAAATATGTGTTCCCTGACGGAGTGGACACGGCCATCGTCAAGGTCAACTCTGAGATGACCTTCCCGTGCTCTGTCATGTCCATCCAGGACATCCAGTGCCCAGTGTATGACTTGGATAACAACGTGGCCTTCATTGGAATGTATCAAACCATGACCAAGACAGCTGCCATCACTGTCCAgAGGAAGGACTTCCCCAGTAACAGTTtctatgtggtggtggtggtgaagacGGAGGACGAGGCATGTGGGGGTCCCCTGCGCTTCTACCCCCTCCGTCCAGATGAACTCATTGATGCCGGCAACCGCAGTAAAACTCTGGACGTGGTCGTCTCGCCCGCCATCAGCTCGGATGTGTACGTGATGGGCATGCTGTTCTGCCTGGGCAtcttcctctccttctacctGCTCACCTTCCTGGTGGCCTGTGTGGAGAACAAGAGGATGcacaggaggagggaggggctTCTGAACCCAGCGGACATGTCGCCCGCGGAGACAGCCTCTCTACTGGGAAAGCCAGGTGTGACTCCAGTCTCCCCCTATGAATACGGCTCctttgCGGACAACGCCAGCACGTTGAGCTCAGAGGCCATCACAGACAGCATAGCATCAGATGCCAACTACGGATACATGGagCGTTCGTTGGAGAGCGTTACGGGTCGTAGTCGACAGGAGTCTCTGAGCTCAATAGAGGAGGATGACTATGACACGTTGGCCGACATCGACTCGGACAAGAACATCGTCCGCACCAAGAAGTACCTGTGTGTGTCGGACCTCGCTCGCAAGGACAAGAGGGTTCTGAGTAAAAAGTACCAGATCTACTTCTGGAATATTGCCACTATAGGTGTGTTCTATGCCCTCCCTGTCATCCAGCTGGTCATCACTTATCAAACGgttGTCAACGTGACAGGAAATCAGGACatctgctactacaacttcctgTGTGCACACCCCCTGGGGaatctgagTGCCTTCAACAACATACTGAGTAACCTTGGTTACGTGATGCTGGGCCTCCTCTTTCTGCTCATCGTGCTGCAGAGAGACATCATCCACAGCAGAGCGCTGGACCGCCACGACCTCAACGCACTGGAGTGTGGCATCCCTAAGCACTTTGGGCTGTTCTACGCCATGGGCACAGCTCTGATGATGGAGGGACTGCTGAGTGCCTGCTACCACGTTTGCCCCAACTACACCAACTTCCAGTTCGACACCTCCTTCATGTATATGATCGCTGGGCTGTGTGTGTTAAAACTATACCAGAAGAGACACCCAGATATCAATGCCAGCGCTTACACTGCCTACGCCTGTCTGGCTGCTGTCATCTTCTTCTCTGTCCTAGGAGTGgtgtttGGGAAGGGCAACATGGTGTTCTGGATcatcttctctgtcctccacatCCTGGCCACCATGCTGCTCAGCACCCAGCTCTACTACATGGGTCGCTGGAGACTGGATTCTGGCATCCTGCGCAGGATTGTGTATGTGATCTACACTGACTGTATCCGCCAGTGCAGTGGCCCCATGTATATTgaCCGAATGGTTCTGCTAGTGATGGGAAACATAGTGAACTGGTCTCTGGCTGCCTATGGGCTACTAAAGACACCCAATGACTTTGCCTCTTACCTGCTGGCCATCGCCATCTGCAACCTGCTACTCTACTTTGCCTTCTACATCATCATGAagctccgCAGTGGTGAGAGGATCCAGTGCATGGCCATGGTGTGTATCCTCTTCACGGCCGTGGTGTGGGGCTtcgctctcttcttcttcttccaggGCCTCAGTACCTGGCAGAAAACCCCTGCCGAGTCCCAGGAACACAATCGTGATTGCATCGTGCTCTCCTTCTTCGACGACCACGACATCTGGCACTTCCTGTCCTCCATTGCCATGTTTGGTTCCTTCctgGTTCTCCTCACCATGGACGATGACTTGGACGACGTCCAGAGAGACAAGATTTTCGTCTTCTGAGAAAGCTACTCTCTGGCTCCGCCTTAACATTTATTGCTGGCCAGTAGTGACACATTGGCAACTGAGACACCCAATGGCATGTCTCCCTGACTGCAGGCGAGCTGGGCATCTCTCAGCCAATCAAAGAGCTGGGGAAGGACGGTGCGCCCTCCCCGGAGTTGGAATCTGTATGGACACTTGGCGTGCCAATCAATGAGTCTGGTTCACCAGGACATGCTGACATTTCTCCTTACTGCCATCCAATACTACTGTGGTCGTTGTGTTTTCTTATTGCTGATAACGGTTTGAATTTAATTTATATTGCATCATTATTCACCTGCAACTCCATCAATGCATTTAAacgtgtatagtgtgtgtgtgcctgtgtatatATGATTGAGcataagcgtgtgtgtgtgtgtgtgtgtgggaggggagtGAGAACACTCCATGTCCAGTCTGTCTGTGGCCTTTAATGTTCTGATCATGCGCGTGGTTTGTATTTCTATGGCTGTCTGATACTGGATGGATCTGTCCCAGAGAGAGATCAACGATTGTATTTTAATTACTAACTACGTccggggcggcagcgtagcctagtggttagagcgttggactagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2346939 lncRNA upstream 47371 12221691 ~ 12234948 (+) True G2051940
TU2346930 lncRNA upstream 66094 12214128 ~ 12216225 (+) True G2051936
TU2346923 lncRNA upstream 73212 12206807 ~ 12209107 (+) False G2051932
TU2346924 lncRNA upstream 73212 12206807 ~ 12209107 (+) True G2051932
TU2346886 lncRNA upstream 107549 12142057 ~ 12174770 (+) True G2051895
TU2346961 lncRNA downstream 3730 12307511 ~ 12342066 (+) True G2051958
TU2347019 lncRNA downstream 9547 12313328 ~ 12313977 (+) True G2052014
TU2347006 lncRNA downstream 48806 12352587 ~ 12353369 (+) True LOC110507554
TU2347001 lncRNA downstream 94731 12398512 ~ 12402555 (+) True G2051996
TU2347090 lncRNA downstream 159834 12463615 ~ 12463855 (+) True G2052075
XM_021586922.2 mRNA upstream 89060 12189333 ~ 12193259 (+) False cd3e
NM_001195174.1 mRNA upstream 90438 12189579 ~ 12191881 (+) True cd3e
XM_021587594.2 mRNA upstream 156586 11214666 ~ 12125733 (+) False LOC110507545
NM_001124247.1 mRNA downstream 40024 12343805 ~ 12346332 (+) True apoa-i-1
XM_021587610.2 mRNA downstream 44604 12348385 ~ 12353409 (+) False LOC110507554
XM_036965555.1 mRNA downstream 49776 12353557 ~ 12368584 (+) False LOC110507072
XM_036965556.1 mRNA downstream 54636 12358417 ~ 12368584 (+) True LOC110507072
XM_021587611.2 mRNA downstream 70782 12374563 ~ 12396767 (+) True pcsk7
TU2345979 other upstream 144520 12127441 ~ 12137799 (+) True G2051018
TU2345997 other upstream 1288731 10992985 ~ 10993588 (+) True G2051034
TU2345197 other upstream 1503952 10775087 ~ 10778367 (+) False LOC110507540
TU2345199 other upstream 1506451 10775087 ~ 10775868 (+) True LOC110507540
TU2345024 other upstream 1699234 10575710 ~ 10583085 (+) True rap1gap2a
TU2347079 other downstream 134178 12437959 ~ 12439478 (+) True nudt8
TU2348584 other downstream 674746 12978527 ~ 12978923 (+) True G2053443
TU2348868 other downstream 1250959 13554740 ~ 13575495 (+) True LOC110507618
TU2350609 other downstream 2521739 14825520 ~ 14833588 (+) True LOC110507180
TU2351702 other downstream 3293252 15597033 ~ 15597651 (+) True G2056256

Expression Profile