RNA id: XM_021587623.2


Basic Information

Item Value
RNA id XM_021587623.2
length 1781
RNA type mRNA
GC content 0.50
exon number 5
gene id nudt8
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12436060 ~ 12439501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTTCTTTGTATTGCAGTTGTCTTGAATGACTGTTCTCAAACCTCACCTCGGGGACCACCAGACAAGTCACAATTATATTGTAGCCCCGAAGTAACGTTAGCACACCTGATTCCCTTAAGTTAATTAAGGTTATGATTCATTTGcaatttgaatcaggtgtggaAATTCACGAGCTGCGGGAGATCCCCGAGGAgcggtttgagaaccactgctgcAAATGTTCAGGAGTCCACAGATTCTGGCCTTGACATGCCCTGTCAGGACCCACAGACCCCTGCAGCTGTCTGGCATAGACCCCAACGTTCCTGCCCTACCTGAGCATGCCTGTCAGAGGTGGCCTGGACCCAAAACAGGGAGAAGTCTCTGTcagggggatggaggggaggaggcagTATCCCTCTCTTCAGCCATTTCTTCACAACTTATTAGCAGAGGCACCTCCTGTTGTGGGAGTTGTCTCCTAAATGCTGCACCTCAACACCCCTTACAAAAAGCCACCCCTCCCAACCGTCCTCAATTGTCTCAGGACTCTAGCTTTGTTTCTTTGAAACGTACACCACGACTGCCGGTGCTTGTAGCATGTGACCCTTGGAAAACCACTTTATTGGAACATTTGGGCAATTCTAAAGTCCCTGAATGTTTTAGTGACCTCAAGTGCCCTCTACAAAGGAGGCAAACTGACAATGGTAGCCAATGTTTATCTGCTGAGGAGAAGGTGAACGTCACATTCAGTGTTAAAAGTAATAGTTACAGTCCTGTTCAAATTTGCAAGGACATTTTTCACAGACTGCTTGCGTCCACACCCAAACTGTGGACTGTGGATCCCCAGAGAAGCCTTTCACTCCAGAGCCGCGGCCTGCACCAGGCAACTGCCTCCTGCCCAGTGGGTGCTCTGAGGGAGTGCCTTTCATTGGTGAACGAGGCGCGTTGCCGTCAGAGCCTGGGGCCTAACGTGGCTCTTTATGAGAAGGACGTCTGGGGGAAGAGGGGGTCCAGTGAGGCCCAGGGGAAGTGGGCATCCGTGCTGGTCTCTCTTTGCTCCGTGGAGGGAGAGCCCGCCTTCCTCTTCACCCTCAGATCCACAGCTCTGAAGGGCAGACACAAGGGTGATGTCAGTTTTGCAGGGGGCAAGCGTGACCCCTCGGACAAGGACGTTGTGGACACCGCCCTGCGAGAAGCTGGTGAGGAACTGGGCGTCACTGTGGCAACAAACCAAGTTTGGGGCGTGCTGAAACCACTCAGGGATATGTCTGGAATGATGATAGCCCCTGTACTGGCCAACCTCGGACCCCTGGAGGCGCTGTCGTTCAAGCCAAATCCTGCCGAGGTAGAAGAGATCTTCACCCTGTCGGTCTCCCACGTATGCAGCCCACAGAATCGGGGATACACCAACTTCCGTACCGGTGAGCGATATGGATACACCTTGCCTGTGATCCGCAACGGGAAGCACCGCGTGTGGGGACTCACTGCCGTAGCCCTCGAACACACGCTCAAACTCATCATGCCACCATGACAACCAATCATGCCAGCCATCaatactgttttttttgttgtaaagtATTTGTGATTATAGAATAATTTATTATTTGTTTCATATGTGAAATCAATCATTGGGGGTTATAGATCAATTGATGACTTCTTATAGTCAATGTATCCCTTATAACCAACAGTACATGTCAGAAGTGATATATTGAATATATGAGATATCAGGTAGGGTCATGTAAGGAACAATCACCTTCCATGCCAAAGCCACTGGATTGTAATATCACTGTATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2347001 lncRNA upstream 34294 12398512 ~ 12402555 (+) True G2051996
TU2347006 lncRNA upstream 83480 12352587 ~ 12353369 (+) True LOC110507554
TU2346961 lncRNA upstream 94783 12307511 ~ 12342066 (+) True G2051958
TU2347019 lncRNA upstream 122872 12313328 ~ 12313977 (+) True G2052014
TU2346939 lncRNA upstream 201901 12221691 ~ 12234948 (+) True G2051940
TU2347090 lncRNA downstream 24350 12463615 ~ 12463855 (+) True G2052075
TU2347104 lncRNA downstream 44538 12483803 ~ 12487123 (+) True G2052088
TU2347096 lncRNA downstream 50205 12489470 ~ 12515979 (+) True G2052080
TU2347117 lncRNA downstream 74369 12513634 ~ 12519150 (+) True G2052101
TU2347120 lncRNA downstream 90124 12529389 ~ 12529624 (+) True G2052104
XM_021587611.2 mRNA upstream 40082 12374563 ~ 12396767 (+) True pcsk7
XM_036965555.1 mRNA upstream 68265 12353557 ~ 12368584 (+) False LOC110507072
XM_036965556.1 mRNA upstream 68265 12358417 ~ 12368584 (+) True LOC110507072
XM_021587610.2 mRNA upstream 83440 12348385 ~ 12353409 (+) False LOC110507554
NM_001124247.1 mRNA upstream 90517 12343805 ~ 12346332 (+) True apoa-i-1
NM_001124201.1 mRNA downstream 9681 12448946 ~ 12461330 (+) True si:ch1073-280e3.1
XM_021587625.2 mRNA downstream 27292 12466557 ~ 12475236 (+) False LOC110507560
XM_036965173.1 mRNA downstream 27312 12466577 ~ 12474853 (+) True LOC110507560
XM_021587629.2 mRNA downstream 142991 12582256 ~ 12593139 (+) True LOC110507563
XM_021587632.2 mRNA downstream 255636 12694901 ~ 12706764 (+) True LOC110507566
TU2345979 other upstream 299050 12127441 ~ 12137799 (+) True G2051018
TU2345997 other upstream 1443261 10992985 ~ 10993588 (+) True G2051034
TU2345197 other upstream 1658482 10775087 ~ 10778367 (+) False LOC110507540
TU2345199 other upstream 1660981 10775087 ~ 10775868 (+) True LOC110507540
TU2345024 other upstream 1853764 10575710 ~ 10583085 (+) True rap1gap2a
TU2348584 other downstream 539262 12978527 ~ 12978923 (+) True G2053443
TU2348868 other downstream 1115475 13554740 ~ 13575495 (+) True LOC110507618
TU2350609 other downstream 2386255 14825520 ~ 14833588 (+) True LOC110507180
TU2351702 other downstream 3157768 15597033 ~ 15597651 (+) True G2056256
TU2351964 other downstream 3630305 16069570 ~ 16077339 (+) True LOC110507626

Expression Profile