RNA id: XM_021587642.2


Basic Information

Item Value
RNA id XM_021587642.2
length 2101
RNA type mRNA
GC content 0.49
exon number 12
gene id nop53
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12802441 ~ 12814037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCAAGGTGGACATAGGGGCCCATCAACTCGTGCTGAACCTCAACAGAGGAAGAACAGACGTCATCGCATCGTCTCCCAGATGATCCAGCATGGCGGCGGTCAAGAGACTGAAACGCGTGGCAGCAGCGCAGCCAGGATTCATTTCTTTTAAATCATCGGCCGGTTCAGATGACTTGAACAGTGGCCAGAGAAAGCGtgtgaataagaataagaaaaagAATTGGAACAAACACAGTGATATTCAAGATGTTGAAGAGTTTTTGGATGACGTGAGACTTCAGGAAAGGGCTACAGGAGGACTGATATCTGAGAAGCCAGATGATAGCCTGTTCTTTGTGGACATTGGAGAGCAGAGAAAATATGTCCAGCCAGAAGTCCAAGAGGGAAAGAAGGGGAAGAAGTCAAAGTCGCGGCCCTTGAGGATAGACCTAATCCTGCAGCATGACTCCCTCGTCCCTCCACCTAAAGATATTTTGGCCCACCAGCAACCGAATGCAAAGAAACTCCGCCGCATTGCAGAGAATGCAGCGAAATTGGCGGCCATGGGTGTGTTACCACGGAGACAGAAACGGCTCTTGAACCGCAGACCGGCAATTACAGCGTCAAAATCAAAAACGGCGGCCAACAACTTCCCAGACAGACCCTATTATGATCTGTGGGGAGGTGATGCCAAAGAGACAGCTGATCCTTACTACCTTGAGCAAACAGGGAAGAAGCGTGTGAAGCGACCAGAGAAGCTCAACTCAAAGCCCTCTGTTCTCCCGGCAGTGGAGGTCATAGCCCCCGGAGGCTCCTACAACCCAGACTTCTTCTCCCATCAGGCCTTGTTACTAGAGGCCCATGAGGTGGAGGTGAAGCGGGAGAGAGCGGAGCTGAGAATAGAGAGACAGCTGGCTGTCAACCGAGACGATACCGCCACTGAGGAGACAGTCTTCCAGGAGCTAGTGGAAGGGCtagtggaagaggaggaagatgaagatgaggaggaagaggatgtttCTATTCGTGGCGGCTTGCAGcaggagaaaaagacagagaaagaaaggaggcGAGAGAGAGCCGACAAGATAAAGTCGCAACAGAAGCAGGCAGCGAGGGTGTTCACTGACAAGAAGCAGCAGCTATTCCAGCTCCGCTCCATCCAGGCGACCCTGAAGAGGGGGGAGCAGCAGACAAGAGAGAGGGTGGCCCAGCGCAAGGCCAACCAGGAGGCAGAGAAGTCCATGCCTCGACGTCTTGGCAGACTCAGGTTCCAGGCTCAGGATCTAGAGGTCCAGCTAAGTGACGAGATTCCTGGATCCCTGCGGACACTCAAGCCAGAGGGCAGTGTCCTCAAGGACCGCTTCAAGAGTATGCAGAAGAGGAACATGATTGAGCCCAGAGAACGAGCCAAGTTCAAGAGGAGACACAAGGTGAAGTATGTTGAGAAGAGGGCCTTCAGGGAGATCACCTAGAGACCAAACCAACCTATGGAACTGTTCAAGACTGACGTCACGAACAACACAGAGGCACCCACCACTGAGTGGCAGCCAGCCAGAGAGCTACTGTTTGCCCCATCAATTGTCATCAATCAACTCAGCATTTTTTTTGTCTGATGGATTTGACACCTTTTTAAATCTGTTGGAAAATGTTGAAATCCCCACAACTTGTAACATTTGCCAGGCCTTAATATTTTCACACATCTATATACAACACAAACCAGCCCAACCCAGGTAGTGTTATACAGATTCAGTCAGTTATACAGATTCAGTCTAATGCATTTTGAGGTCAAATGAGTTCATTGGCAGGATATTTAAATCATCTGGATCTGTCAACATCAGTTGAGAATGTTAGACTTCAGAAGGGtgccctcctgtctccctcccagTTGGTAATCTTGTCTTTCGCTCTCATCAAACCAAGATTAATACCCTCGTTAGAAGGGGTGGATGCCTGAGTGAATTTGCAAAGCGATTAATGACATAGTAACGTTTAAAACCACGTGTCAAGAGTTGGACTTGTGTGCGTTCTGTCAGTTATCTGTTATTGTGTACAAAATCCCTTTATTTGCCATAATCTGACTTGATTTCATTAAAACAAGTTAATTATTGACATTGTT

Function

GO: NA

KEGG:

id description
K14840 NOP53, GLTSCR2; nucleolar protein 53

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2348303 lncRNA upstream 6699 12782380 ~ 12795742 (+) True G2053205
TU2348358 lncRNA upstream 30804 12771433 ~ 12771637 (+) True G2053249
TU2348350 lncRNA upstream 47655 12754484 ~ 12754786 (+) True G2053243
TU2348347 lncRNA upstream 54139 12748034 ~ 12748302 (+) True G2053240
TU2348346 lncRNA upstream 54622 12747146 ~ 12747819 (+) True G2053239
TU2348519 lncRNA downstream 60430 12874467 ~ 12924756 (+) False G2053382
TU2348521 lncRNA downstream 60430 12874467 ~ 12924756 (+) False G2053382
TU2348520 lncRNA downstream 109677 12923714 ~ 12924756 (+) True G2053382
TU2348526 lncRNA downstream 135364 12949401 ~ 12952410 (+) True G2053387
TU2348527 lncRNA downstream 139817 12953854 ~ 12954147 (+) True G2053388
trnaa-ugc-186 mRNA upstream 6771 12795595 ~ 12795670 (+) True trnaa-ugc-186
XR_005040044.1 mRNA upstream 11326 12782256 ~ 12791115 (+) True LOC118944739
XM_021587640.2 mRNA upstream 50013 12749517 ~ 12752428 (+) True LOC110507572
XM_036965375.1 mRNA upstream 60324 12720869 ~ 12742117 (+) False LOC110507570
XM_021587635.2 mRNA upstream 60324 12729470 ~ 12742117 (+) True LOC110507570
XM_021587648.2 mRNA downstream 3149 12817186 ~ 12855301 (+) True LOC110507577
XM_021587653.2 mRNA downstream 61764 12875801 ~ 12880508 (+) False sirt2
XM_021587652.2 mRNA downstream 61765 12875802 ~ 12880508 (+) True sirt2
XM_021587649.2 mRNA downstream 66598 12880635 ~ 12892609 (+) False rinl
XM_021587651.2 mRNA downstream 66598 12880635 ~ 12892609 (+) False rinl
TU2347079 other upstream 362963 12437959 ~ 12439478 (+) True nudt8
TU2345979 other upstream 664642 12127441 ~ 12137799 (+) True G2051018
TU2345997 other upstream 1808853 10992985 ~ 10993588 (+) True G2051034
TU2345197 other upstream 2024074 10775087 ~ 10778367 (+) False LOC110507540
TU2348584 other downstream 164490 12978527 ~ 12978923 (+) True G2053443
TU2348868 other downstream 740703 13554740 ~ 13575495 (+) True LOC110507618
TU2350609 other downstream 2011483 14825520 ~ 14833588 (+) True LOC110507180
TU2351702 other downstream 2782996 15597033 ~ 15597651 (+) True G2056256
TU2351964 other downstream 3255533 16069570 ~ 16077339 (+) True LOC110507626

Expression Profile