RNA id: TU2348806


Basic Information

Item Value
RNA id TU2348806
length 1374
lncRNA type sense_over
GC content 0.38
exon number 1
gene id LOC118944728
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 13352729 ~ 13365310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGGAGCCAGTAACAAGCCATCGTGAAGACCTGTTATCATTGGATAAGATTCAATTAGCTTTAAACGTACTTAAATTGTAAGTTCTCTGTTTGTGTTTGAAATCTGCCATGTGTGCAGTTGTTTTTGTCTTTGGATCAACAGTTGGAAGCAGTTAGTGTATTTAAATCCAGTGGATTTGAGATGGTATTTCTGGTTAAAACATGACTTGGATGTTTATCTTTTCATGATTACTAAATGATAATCAAATTGCCCCTCAATTGTATAATACATGTATTGTAGTTCGGGAGAAGAAACTGAAGACCTTTCTTTATTTTGACGTTAAACACGTTTTGTAGCGTTTTGTTTCGTTTTCAAAAATACAATTTGTATGGACTTTTTCTGTGTGaaataagttttttttttcattcattcCTAATAAAAAATTAATTCTAAATCTATCTGAAAGCCAAGAACCCATAAAATGAGGATTGAATAAGCTTAAAGATAAATATCTGACAATAGACTGGAATAACTTGACCAGTCAGTTCATCCCCAGTTACACAAAGGGCGAACCGTCAACCGTGTTAGAGCATTGATATTTGTCTTTGCCAAGGCATTCCATTAAAAAGTTTCCATAGTCAGTTTGTACACAACGTTTTATCTCAAAGCGTCCAGGAAATCAGGGCTTTTAAGAAACACCAACCATTTTTTGTGAACCAACAACTGTCCCTATCAATTCAAAGCATTACAAAGAGGAACAACATGTGTCCAAATGTCTAGAAAGAGGTCACAACAACAAGCAATGTAGTGGTTGAAATCAGTTGAGAACGTTTGCATGTCAAGTGGGAGAAACTGAGCCTTCACTGAAGCCTACAGTTTTAACCTTGAACCCAAGAGGTTAACAGTCCCAACTTGCCATGTAAACCTGAAACAGACGTTCTGATGGATACAACTGTGATCATCCTATTTTCTGTGTTGCCATACTGTATCAATTATAAAGCCTTAACATTACTGCAGTCTATGCTTTGTTTTCAGTTCaggttatttattttttggagcCCCTTTTTGCAATGTCATTACACCTTTAAGCAAAGAACCTGTGAGAATAACCAAGCACCTTTTTTTCTGTGGGAAACTGGGCGTCCCCTATAGCGTTCGGAGCACGTGTTGTTCATTTCCTGTGACAGCCTCATGACATCCTGTGGTGTGTGCCGTGGCGTGGTTCACTTCCTGTGGCGACTATGTGACTTCTTGTGGTTCCATTCTCCAATGTACTCTCTCACAGAGGGATCGCACTGCTGTAAAGTAGCACCACATTTTTTGTGGGAATCTCATTCTCAGTTTCAtgcagtgtaaatttgctgtttttgactttttttttttactgaactt

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2348815 lncRNA upstream 2108 13360086 ~ 13361770 (+) False G2053650
TU2348816 lncRNA upstream 3058 13360086 ~ 13360820 (+) True G2053650
TU2348803 lncRNA upstream 18018 13345633 ~ 13345860 (+) True G2053639
TU2348786 lncRNA upstream 40218 13323235 ~ 13323660 (+) True G2053622
TU2348739 lncRNA upstream 85390 13275990 ~ 13278488 (+) True G2053583
TU2348819 lncRNA downstream 2498 13367749 ~ 13367972 (+) True G2053653
TU2348823 lncRNA downstream 37659 13402910 ~ 13403987 (+) True LOC110507076
TU2348846 lncRNA downstream 61545 13426796 ~ 13427150 (+) True G2053679
TU2348867 lncRNA downstream 107200 13472451 ~ 13475702 (+) True G2053699
TU2348874 lncRNA downstream 120640 13485891 ~ 13486186 (+) True G2053706
XM_036964854.1 mRNA upstream 99441 13233531 ~ 13264437 (+) True LOC110507593
XM_021587677.2 mRNA upstream 141608 13216479 ~ 13222270 (+) False LOC110507592
XM_021587674.2 mRNA upstream 147605 13197855 ~ 13216273 (+) False LOC110507591
XM_021587673.2 mRNA upstream 147605 13197860 ~ 13216273 (+) True LOC110507591
XR_005039982.1 mRNA upstream 288360 13065291 ~ 13075518 (+) True LOC118944675
XM_036964895.1 mRNA downstream 20798 13386049 ~ 13404009 (+) False LOC110507076
XM_021587693.2 mRNA downstream 52979 13418230 ~ 13425382 (+) True LOC110507600
XM_036965383.1 mRNA downstream 66222 13431473 ~ 13439015 (+) False LOC110507601
XM_021587694.2 mRNA downstream 66337 13431588 ~ 13439015 (+) True LOC110507601
XM_021587698.2 mRNA downstream 102951 13468202 ~ 13471952 (+) True ckmb
TU2348584 other upstream 384955 12978527 ~ 12978923 (+) True G2053443
TU2347079 other upstream 924400 12437959 ~ 12439478 (+) True nudt8
TU2345979 other upstream 1226079 12127441 ~ 12137799 (+) True G2051018
TU2345997 other upstream 2370290 10992985 ~ 10993588 (+) True G2051034
TU2345199 other upstream 2588010 10775087 ~ 10775868 (+) True LOC110507540
TU2348868 other downstream 189489 13554740 ~ 13575495 (+) True LOC110507618
TU2350609 other downstream 1460269 14825520 ~ 14833588 (+) True LOC110507180
TU2351702 other downstream 2231782 15597033 ~ 15597651 (+) True G2056256
TU2351964 other downstream 2704319 16069570 ~ 16077339 (+) True LOC110507626
TU2352309 other downstream 3009015 16374266 ~ 16376043 (+) True G2056820

Expression Profile