RNA id: XM_021587043.2


Basic Information

Item Value
RNA id XM_021587043.2
length 5212
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110507164
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 15380417 ~ 15405079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACACAAAGTGCAAAAAGGATTAGCACAGGGAGGCTAGCTAAAGAACCTCAACGAAACGGTACAAAAATGTGAACGCCCTCCAGAGCAAGTACGCTAAGACAAAGATGGGGGTCAAAACCTTTACCCACAGTTCCCCCACGCACAGTCAAGAGATGCTGGAAAAGCTAAATGCCCTGCGCAACGAGGGCCACCTCTGCGATGTCACTATCCGGGTGCAGGACAAGTTGTTTCTGGCGCACAAGGTGGTGCTGGCCTGCTGCAGCGAGTTCTTCCGCTCCAAACTAGTGGGCAGGCCTGAGGAGGAGGACAAGTTTGTGTTGGACTTGCACCACGTCACGGTGAGCGGCTTCACCCCTCTGCTGGAGTACGCCTAcacctccaccctctccatcagCACGGAGAACATCATCGACGTTTTAGCCGCCGCCAGTTACATGCAGATGTTCGCCGTGGCGAGCACATGCTCAGAATTCATGAAGTCCAGCATCCTCTGGAGCGCCGGGAATATGGGGCAGGAGAAACCGCAGGAGTCGGCTCTTGGCGAGAGCGTTTCCTCCCACTGCGCTTTGACGCCGTTGGACAGCAGCCTGTCGCCTGTATCCTCTGACTGCAGTGTGATGGAGAGGAACATCCCTGTGTGTCGCGAGTCGCGCCGCAAACGTAAGAGCTTTATCATGATGTCCCCAGAGAGCCCACTCAAATGCACCTCGCAGATCACCTCGCCGCAGATGCCCAACCCATCGCCCTCCTCCTTCTCGGAGACCACCACCCAGCCAGTGGACTCTTCCCTGGCCTTCCCGTGGACCTTCCCCTTCGGTATCGACCGGAGGTTCCACCCGGATAAGCAGCCCAAGCTTCCCGAGAGCCCACGTCGTCTGGACCAGGCAGGGCCCTCGGAGGTGAGCCGCCGGCTGAGTGACTTCCTGGCCTGTGAAAGCTCCATTAAGGCGCCACTGTCGCTGGCGGGCCCCGAGGAGGACATACACGTGAAGGTGGAGAGGCTGAGTGACGAGGAGGTCCAGGAGACGTTGTCGCAGCCCGTCAGCGCTTCCCAGAGTTCTTTGAGCGACCAGCAGACAGTGCCCTGCAGTGAACAGGTCCAGGAGGACCTCCTCATCAGCCCACAGTCCTCCTCCATAGGTTCGATAGATGAGGGAGTCACAGAAGGGTTGCCCTCAATGCAAAGTACATCCAATGCTGGAGGTCATGCTGAGGATGATGAAAGATTAGAAAGCCTCCAGTACCCTTACCACTTATACATAAGCCCTTCAACCCGCCCTGGCACTAACGGGCCTGACAGACCTTTCCAGTGCCCCACGTGTGGCGTCCGATTCACCCGCATACAGAACTTGAAGCAACATATGCTCATCCACTCTGGCATTAAGCCTTTCCAGTGTGATCGCTGTGGGAAAAAGTTCACACGGGCCTACTCCCTAAAGATGCACCGGCTGAAGCACGAAGGTAAACGCTGTTTCCGGTGCCAGATTTGTAGTGCCACATTCACGTCCTTCGGCGAATATAAGCACCACATGAGGGTGTCCCGCCACATAATCCGCAAGCCCCGGATTTACGAGTGCAAAACGTGCGGCGCCATGTTTACCAACTCTGGCAATTTAATTGTTCACCTGCGGAGTCTGAACCATGAGGCATCTGAACTAGCAAACTACTTCCAGAGCAGTGATTTCCTCATGCCCGACTACCTGAGCCAAGTGCAAGAGGAGGAGACTCTGGGGCAGTACGAGCTGGTGGAGCACGGCTTCGAAGGCAACCATTCGTCTGTCCAGATGCCGGTCATCTCCCAGGTCTCCTCCACCCAGAATTGCGAGAGCAGCACCTTCCCCCTGGACCCTTTATCCTTGAAGGACGAAAACGTGTCAGAGGAGCCAAAGACAAATGGCAGTAACAGCTCCCCGGACGGCTCGGAGGAGGAGAACGCCCACATCAAAGAGCTGGCTTCCATTACGATTGAGTGACTGTCACTTCCTAATTGTCCCACTCGTTCCCCCTTCCAATCCAAAGCCCTGACTTTGGAAAGTGCCTGAGATTGCCCTTCTTTAGCGAGCACCACTAGAATTAGATGTCTTAACTTTGCTAACAAGTAGTTTCTTTCCTTCCTTATTGGATTGTTGTTTTTTGCATAATGATCGTTCATACGGTAGATGCTGTGTTACTTCTTGAGTGCCGTCGCTTCGGGCAAACTGTTAGTGTTACTAAATATTATTTGATAATAGAATGCTACGTTGGATTTTGTTGTGATTTATGTGAGAGGTGTGTATGTATTCCTTCGTGAATAGGGACACAGTACATTTTAaaccttaaaaaaatatatatatatatatatgatttgaaaacttgaaattgcaTTATAGAGCTCTCATTGTCTCTTTCTTTACGCGCAATATGAATGAACTGTAGCTACTACACTTGACTTGTGTTGGGTGTTGTTCATAATTTAGGTATCTACTGTGGATTCGACTCTCAAAGGTCGGGTCACAAAGGCATGGCAGCATTTCATATGTGAAGTCAATCGTTAATTCATCAAGAGAGACGCACTGCAACGGCTGCGCTTTCCGACATCTAGAAGAGCTAGGCTAAGTTCAAATGTGAAGTTAAAGTGTAGTTAATTTGTCGGACCTATTTCATTAGAAATACTTGTCTCTAGCAGTTCTTGTGTGATGGAAATCTCTATACTGACATATTTGTAATATGTCAGCTGTGTGACAAAAAAGCGAGTCTCACTATAATTagtggttaaataaaataaaacatttcagtgAGGTAGAAGTAATATGTAGGTGACTTATAACTAATATGTCAACTTTGGTGACATATAACTACTATGCTTCAATGTCACTATCTTGACATACAATGAGACCATGTTGCATTTGGTGGAGCATGTGTCGGTAGGAATATTTCTACCTAACTTCACACAGACAGTTTACTTTGGACATGAATGTGAGTGACATTCTTCGGACTAACGTTGTACTAATCAAGTGGTCAGCACATTAGAATTTAGAGCTGGGTGCCTTGCTTTTACTTTGAGTTTATGACATTGCTTAACATGACATTGCTTTGTATCATTTAAGTGTGATCGATAGATATTTTCATCTTCCATAGTGTTTTCGGTTCACCTTGAGATTTCCAGCTAAATTTTCTTTGTCACTGCTTTTCAGCAGAAATCTTGCCCTAGCTTGGACAGCTGTTATATTGAGCCATCACTAATCAGTTGCACATCACCATGCCTTTATAATAAGGTGGTGATACTCCATTGATTAAATGCTACTGATATTTATTTGTTCATTAAGTGTAGTCCTTATCAATTCATTAATCTTGGTAGTcctgcaaaaaaacaaaaaaggaCATTTGCGATTCCAATGAAATGCAAAATAGATTACAAACTCTGATGGTAACATTAAAAATATTACtaggaaaataagaatttggtgaTATTTAACATGCTGAAtctgttattatttttgttttgtcattttagcagatgctcttatcctgagcaacttacagtagtgagtgaatATCTTGGGCTCAGAGAAGTAACGTGTGTTTTATAATCATATAATGGGTGCTCAGAGATTTGACATATGATTGTCTCGTGCCATCCAGTCAACCTTTCCTAAAAAATGTGGCATTTAGCCTAACCACCCTATGTCTGGGTAACAATCAAGCTCTCCTATTGGACCAAATGTTCCCAGTCCCTTTGGGGGTTGGCGTATCTACCATTTTAATCTATCGTTGCTGTTGACATTATAAAGTAATGAGGTAATCATGCTTGGTTTCCCCATGCTATTGAAATATTGTTCACAGGAAATGTAATTTTCTCTCCAATAAACACTGTATCATGTGCGTTGGAGAAACTATAGCCTTTATATAGGACCTTGCATAGCTTCAAGCTGCACAATTTAAAATCTGTAGTCATTTTATTTTTTCACGCGTTTGAGCATTTTAGCGCTTAAGTAAGCTTGTGTTTtgcgtgtgtttgtttctgtttgtatTCACATACCTTTTTCATAAAAAAATGCTGCTGTTTGTTGAAACTTAAAGTGCCCAAATATTTTTGGTGAACCTATTGTGTGCAATAAATGGACAAGCTGTTGGGTTCTATGTTTATATTTTGTGTctgaataatgaaagaaaagaaTGTACTGTTTTTCGTATTGTTGTGTACTTACAATGTGATAAATTAACTGAAGAAAAACAAGTGAGAATCCACTCAATCTGTGAAATCACCAACAAAGTGTACATCTTGATTTTTTATTTGATTCTTTTCAAATTACTCCTAGGATTGTGAAATGCACGTTCATTTGAAAGTCCTGTGAATCTGAGAGCATGCGTTTTCTTTCTTCTGTTTGCTGTTCAATAAGGCCGTGTTGAGGTGAGATGTGTTAAAACCTCAGCACGTATCAGCGTTTTGTTCTTGATTTTTCTCCAACTAAAGTTTTTACAGATATTAGCATGTCTTTCCTTTGTTCCCCAGATGTAGCTTCTCTTATGTgcaatgtttaaaaaatgtattgacaTATATGCCTTTTCAATGTGTACATGATATATACATTTCCTGGTTCATATTGTTTGTTGAAAATATGACAAAACGGTAGCTCTTAGTTATACATTATATATTTTTGTGACTTTTGTATTACAATTGCTGTTTTATGAGTATGCCATCTTTTGGATATTCTTGTTAAATGTGAATACATCAAATACATGTTTAATACATGTTTAAGGAGTGTGGGCCTTTTAATGTTCACTTTGTTGACTGTctgcagacacacaaacatacatatatatatatatatatatatatatatatatatatattgtatgttCTTTATACTGTAGATTAATTTCCAACTTAGTTTGGATGATTGAAAAATATGTTGTATTTTGTGACTTTGATATTTAATCTGTAGTTTCATTTAACAGTTTTAAACATCCCCGTAATGCAATTGGCATATGGTGCAAGAGCAAAAATGTTTGTGGTTTCATAAGCAAGTGTTGAATGTTCAACTTTTCCAGATAATTTCCAAGATTAACTGTTCTAAACTGATGAAACCACTTTCTACTGCTATACAGTTAATGGATGTTCCCAATTCTGATCTGTGTTTTTTCCTAGTTTGCAATTATATTGTGAAGAGGGGTGTTTTGTACAGTTAAAAAAacaactaaaatgtaaataaaaacttGCATTGACTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2351009 lncRNA upstream 5966 15374737 ~ 15375012 (+) True G2055632
TU2351006 lncRNA upstream 9191 15371349 ~ 15371787 (+) True LOC110507162
TU2350858 lncRNA upstream 203296 15177442 ~ 15177682 (+) True G2055504
TU2350779 lncRNA upstream 283886 15095074 ~ 15097092 (+) True G2055432
TU2350715 lncRNA upstream 333725 15044315 ~ 15047253 (+) True G2055369
TU2351033 lncRNA downstream 23098 15428042 ~ 15428314 (+) True G2055656
TU2351604 lncRNA downstream 36405 15441349 ~ 15441568 (+) True G2056167
TU2351632 lncRNA downstream 67647 15472591 ~ 15475846 (+) True G2056191
TU2351654 lncRNA downstream 102198 15507142 ~ 15507763 (+) True G2056212
TU2351665 lncRNA downstream 123879 15528823 ~ 15529187 (+) True G2056223
XM_021587037.2 mRNA upstream 8812 15359148 ~ 15372166 (+) False LOC110507162
XM_036965778.1 mRNA upstream 136476 15242563 ~ 15244502 (+) True LOC110507084
XM_036965774.1 mRNA upstream 138195 15209006 ~ 15242783 (+) False LOC118936438
XM_021587071.2 mRNA downstream 49322 15454266 ~ 15470216 (+) True LOC110507174
XM_021587072.2 mRNA downstream 78131 15483075 ~ 15487764 (+) False LOC110507176
XM_021587073.2 mRNA downstream 78131 15483075 ~ 15487764 (+) False LOC110507176
XM_021587074.2 mRNA downstream 78131 15483075 ~ 15487764 (+) False LOC110507176
XM_021587075.2 mRNA downstream 78131 15483075 ~ 15487764 (+) False LOC110507176
TU2350609 other upstream 547390 14825520 ~ 14833588 (+) True LOC110507180
TU2348868 other upstream 1805483 13554740 ~ 13575495 (+) True LOC110507618
TU2348584 other upstream 2402055 12978527 ~ 12978923 (+) True G2053443
TU2347079 other upstream 2941500 12437959 ~ 12439478 (+) True nudt8
TU2345979 other upstream 3243179 12127441 ~ 12137799 (+) True G2051018
TU2351702 other downstream 192089 15597033 ~ 15597651 (+) True G2056256
TU2351964 other downstream 664626 16069570 ~ 16077339 (+) True LOC110507626
TU2352309 other downstream 969322 16374266 ~ 16376043 (+) True G2056820
TU2352672 other downstream 986077 16391021 ~ 16410369 (+) True LOC110507087
TU2353191 other downstream 1808166 17213110 ~ 17216543 (+) False G2057561

Expression Profile