RNA id: XM_021587073.2



Basic Information


Item Value
RNA id XM_021587073.2
length 1021
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110507176
representative False

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 15483075 ~ 15487764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTGTGTTGAGAATTTATGTGACTTTTATGAATATTTCGATATAGCCCATATAACTCAGCCAGAAAAGGACATTGTGGAATCTCATAACTGCTCTTCTTCCAGGAGTCCTTCTTAATTTGTACAACATGTCTGATAAGCCAAAGGTGTACCAGGGTGTGCGGGTGAAGACAACCGTTAAACAGTTGCTGCAACAGAAAAGAGCTCTCCAGACATCAACTAAAACGAAATCCCAGAGCTCGGTGAGTCAGGATGTGTGCGTCTCCTCCTCCTTGTCAGGCCATTACTTTGATTATTTCCCTGAAGAGATGAATTCCAACTGCATCTTTCAGCCGCGGGCCATTCCAGAGAGCAACGTCCATATGGACAGCTTCGATAATCAACAATTGATAAGCATGATGATCCCCAACGAGACCTACAGCAGTGGTATTCTGCATCCCGCTACCTCAACAAGACTTTGGCGCCAGGAAAATCACTCCCCGAATATGGGCTATTACGGCCATGGCATGGCTCCCAGCTCACCGTCAGGTTCCCTGAATATGCCAAGTCCGGTCGATTACAATAGTTATTCGCCACAGGAGTCTTACTCTTCGTCGTGTTACAACTCTCCGACGAGACTGGACTTGAGTTATGGGTTTGTTCCagaccactaccactaccagaaCTGCAACCTCCAGGAGAGCGTCTCCACTCCAGAATACGCACCGTATGGCACATCAGACTATGTATACGCCTCGCCTGCGGAGGACAGCTACTTCAGGCGTGATTTGTCAAATTCAGAGCTGTGCTACCTTTGAAAATGTATTCGGTCTTTGTTGTCTGTGTAAATACAGTATAATGTGCAGTCAAAACAATGTCTGTAACTCGAAGTCAAACGTTGACACCTGTGGCATTTGTTTTGAGATGTAGGCCTGCTTTGCATTTCAGAGTGTTTGCGGTCGAAGTTTCCTCCGAGTTTCTGTTTTTGATATGATTGGAATAATGGTTTTAGAATTCCTGAGTTTGGATAAATGTTGGATATGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2351632 lncRNA upstream 7229 15472591 ~ 15475846 (+) True G2056191
TU2351604 lncRNA upstream 41507 15441349 ~ 15441568 (+) True G2056167
TU2351033 lncRNA upstream 54761 15428042 ~ 15428314 (+) True G2055656
TU2350993 lncRNA upstream 77996 15404615 ~ 15405079 (+) True LOC110507164
TU2350986 lncRNA upstream 78127 15404615 ~ 15404948 (+) False LOC110507164
TU2351654 lncRNA downstream 19378 15507142 ~ 15507763 (+) True G2056212
TU2351665 lncRNA downstream 41059 15528823 ~ 15529187 (+) True G2056223
TU2351672 lncRNA downstream 52093 15539857 ~ 15540155 (+) True G2056230
TU2351674 lncRNA downstream 53897 15541661 ~ 15541890 (+) True G2056232
TU2351642 lncRNA downstream 76505 15564269 ~ 15565359 (+) True G2056200
XM_021587071.2 mRNA upstream 12859 15454266 ~ 15470216 (+) True LOC110507174
XM_021587041.2 mRNA upstream 78131 15380959 ~ 15404944 (+) False LOC110507164
XM_021587042.2 mRNA upstream 78131 15380959 ~ 15404944 (+) False LOC110507164
XM_021587043.2 mRNA upstream 78131 15380978 ~ 15404944 (+) False LOC110507164
XM_021587045.2 mRNA upstream 81498 15380958 ~ 15401577 (+) False LOC110507164
XM_036965761.1 mRNA downstream 84618 15572382 ~ 15604161 (+) False LOC110507160
XM_036965762.1 mRNA downstream 84618 15572382 ~ 15604161 (+) False LOC110507160
XM_036965763.1 mRNA downstream 84618 15572382 ~ 15604161 (+) False LOC110507160
XM_036965764.1 mRNA downstream 84619 15572383 ~ 15604161 (+) True LOC110507160
XM_021587728.2 mRNA downstream 257241 15745005 ~ 15768122 (+) False LOC110507625
TU2350609 other upstream 649487 14825520 ~ 14833588 (+) True LOC110507180
TU2348868 other upstream 1907580 13554740 ~ 13575495 (+) True LOC110507618
TU2348584 other upstream 2504152 12978527 ~ 12978923 (+) True G2053443
TU2347079 other upstream 3043597 12437959 ~ 12439478 (+) True nudt8
TU2345979 other upstream 3345276 12127441 ~ 12137799 (+) True G2051018
TU2351702 other downstream 109269 15597033 ~ 15597651 (+) True G2056256
TU2351964 other downstream 581806 16069570 ~ 16077339 (+) True LOC110507626
TU2352309 other downstream 886502 16374266 ~ 16376043 (+) True G2056820
TU2352672 other downstream 903257 16391021 ~ 16410369 (+) True LOC110507087
TU2353191 other downstream 1725346 17213110 ~ 17216543 (+) False G2057561

Expression Profile