RNA id: XM_021587019.2


Basic Information

Item Value
RNA id XM_021587019.2
length 6871
RNA type mRNA
GC content 0.54
exon number 27
gene id LOC110507155
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 15604169 ~ 15714610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGGTGATTGTTGAGGTAGACGATACACCAGTAGGTAGAGCTGCTGGCAGGTAGTAGATACTGTAGCAGCTTTGAAGGAAGCTCTAATTCGCTCACTCGGTAGTTGAGAGCTAGAATAATTTCGCAAATGGAGGACGTGTATTTGCTGGACAACTGGCGAAAGGATCTTCATGTGTCAGAGGGCATGATCGACAACGCAGTGGATATGGACAGTCTGAACAGGAACTTGCCTGAACGCGGATGGCAGACCCATAAGGTGTTACAGAGCACGCCACTGGATCTGTTTGAGAGTGGCAAGGCGCTGAAGGTCCAGGCAGAGCGCCCCCATCTGGTCAGTCTGGGCAGTGGCCGTCTCAGCACGGCCATCACACTGCTGCCCCTTCCTGAAGGTAGGACCACGTTGGGCCATGGGGCCATGGACATCAGCATCCAGGGCCCAGGAGTTGCCGGCCAGCACTGCTACATAGAGAACCGGGCAGGGATCATCACTCTCCACCCCTGTGGGAACCAGTGTGCCATAGACGGGCTTCCTGTCACCAAACCGGTCCGCCTGTCACAAGGCTGTATGCTGTGTTTTGGCCAGTCGGCTTTTTTCCGCTTCAACCACCCAGAGGAGGCGTTCAGGATGAAGAGCATGATGCCAGGGGGAAGCAGGGGCTCCGGTGGGAACTACAGAATCCACTCAGATACAGAGGGCCTGGTCAATGGGAACCATCAGTCAGGAGCGTCCCAGTTGCGCCACCCAGCCCCCGGGGAAAGAGACTCCCGCTCCGAGCATAGTGCCATCGTCAGCTCCATCGAAAAGGACCTCCAGGACATCATGGACTCCCTAGTCATGGATGATCCCCAGCCTCCCTCTTCAGACCACCCCATCCCCCACTCCCCGCTGTCCCCCATGGTCAATGGAGGAGGCcgatacctcctctctcctcccaccagcccaGGAGCCATGTCTGTGGGCTCCAGCTATGAGAACACCTCCCCACCCTTctcccccctgtcctctccctcggCGGCCAGCAGCGCAGGCAGCTACACCAGCCCTTCTCCCAGCGGCTGCCTGGACCCCCAGGACCCATCCCTGCCCCCCGTGCCGGTCCGCTCATCCAGCTACAACTACACAACTACACCACCCATCCCTCAGCCAAGGACCACACTGACCAACTACAGCCCTGGAGGCGGGGTGCAGAGGGTTCCTGAGAGCCCTAGGCACCAGAGAAAAGGTCTCCTGGAGGCCCCCCAGAGCCCCAAGCCAGCCCGCAGAGGCCAGAGCCTGGACAGCCCAGGGGGGGTGGGTTCAGAGAGCCCTAGACTGACCCACCTATCTATTGCCTCAGCCGATGCCGGGTACATGGGCAGGAATGCAGTGCCAAGTAGCCCCAGATTCACGGCCAAGTTCCcctacaccacctcctccccaTCCAGTCCAAGGACGAAAGCGGGAACCATCCTCCAGGAGCGCCCGGCCAGCCCCTTCAGAGAGCAAGTGGACCACTCCCTCACCTCCAGCCCTTCCAGACAGCTGCTATCCCAGCACAGCAGGGCCTTTCAGCCTCCCCTGGACCCAATCGTCCACATCATCCAGGGGGGCTCTCCACTCCAGCAGCACCACCCCTTCGCCCACCCCCGCACGCTGCAGCCCCCAGAGAGCCCTCGACTGTCTCGCAGGAACCTTGAGCTCAGCAGCGGGGCCAGCAGCATGAAGGAGCTCCCTCCTCTCAGCCCCTCCATGGCTCGCAGAGGGGTGCCTGTTCTCCCGGGGGCTCTCCCTGGAAGTATCCCCACATTGAGAACACCTGAGAGCCCATCATCATTGGGGAAGTTGGGAGTCCCGGAGAGCCCCAGGCTCCAACGCAAGGCCGAGTCCCCCGCGGAGGACCAGTTTGGCGGCAGTGTGGTCCGAGCCCGCAGCCCCTCCCCCACCTCAGGGTTGATGATGATGGAGagcgggggaggggggaggaaggccAGCTTTGGGAATGCCCTCTCCCCAGCTTACAGCCTGGGCTCTCTGCCTGGCTCCTCTCCTCTTGCCAGCCCCAGGGGCCATAGGAAGATGTCTGGGGGCCCCTGGGATCTGAGGGGCCCCCACCCGGGCATGCGCGAGCGCAAAAACAGCATCTCTGAGATCAGCGACAACGAGGACGAGCTGTTGGAGTACCACCGgcgccagagagaggagaggctcaGGGAGCAGGAGATGGAAAGACTGGAGAGGCAGAGGCTGGAGACCATCCTGAACCTGTGTGCTGAGTACAACAAGGGCGACGGGCCCTTGGGGGGTGAGGCAGAGGGGAGGATGGGCTTCCCTGGGGGTCTGGGACCGGGGGAGGGGGCGGCCAGGAGACCCTCTATGGACAGCTTGGCAGGGTCCAGCTCGCTGTGTCGTAGCATGGCccagagacagcagagggagagcGACGAGGAGAACCTCAAGGAGGAGTGCAGCAGTACAGAGAGCACCCATCAGGAGGTGAGGACGCCACTTCCTCCACAGGCCCTCCACAATGGAGACCGATACCAGcATGAAGAGCAGTCTGTTTCTGGCGGCGTGGAGCGGGCAGAGCTGGGTTACCTGGAGGACGAGAGGGTCAGAGTGCTGGCCCGAGTCGACGAGCTCAAATCACGGATTACAGAGCTGGAGCAACAGCTACAGGAGTCCAAGCAGGAGGCGGAGATGGAGCGGGCCCTGCTACAGGGGGAGAGGCAGGCGGAACTGGACCAGATGGAGGCAGAGACGGAGATCATCAGACAGCTGCAACACAAGCGCAAGGAGCTGGAGAACACCAtccagagggagaaagacaagGCATTGCCAAATCCTGGATGGCTTCCCAAGACCGTATCTAGTTGGTTTTGCCATCCCAAGGAGAGGGCAAATGTTGACGCAGAGCGCCGCGCCCTGGCGAGCCTCCAGGAGGGCTACAGTGAGCTGAAGAACCAGCTTCATAACTGCCCCGAGTCACTGAGGGAGCAGTTACACGAACAGCTCAAAAGGGAGGGCGAGACCTTGGAGTCAGAGACAAAACAGTTTGAGGACTTGGAGTTCCAGCAGCTGGAGAGGGAAAGcagcctggaggaggagagggagaccatCAGCCAGCAGCTGCTGCAGGAGAGGGCCGAGTACCACACCAGCATGGCCAAGAGGAAGGACAAGGTGGCAGCTCTGGAAGGCCAGGCCAGTCAGCTGGGACAGCAGGCGTCTCAGGAGTGTGACAAGCTGGCTAAGGACAGGAACCTTACCCTGCAGATGCTCCATAAggagaaagagagactatCGGCCCTGGAGAAGAGGTACCTCAGCCTTACAGGAGGAAGGACTTTCCCTAAGAGTTCCAGCACCATGAAAGAGGAGTATTTGACTGTGGGCCAGTTAACTCAGATCTTTGGGATGCCGAAGGTCGAgtcctcccctacctctcctctccggCCCTTCCAGTCAGGAGCGGGAGACCCTGCCTTCTCCTGCCTCTCCGTTCCTCAcggttcctccctctctctctctgttgagTACCAGCCTGAGCGCAGTAGGCCTCAAATCCCCACTCTCGATTTAGAGCAGTGGTACCAGGAGGCGATGGCTGCTGGGGTGAGCAGccatctctgcccccctctcccaGCTAAATCTCTCTCCCCTCGCAGGCCTATGCAGGTGTTCCGCTCCAAGCTGGACAGTGATGCTGGACAGACGGTACATCAACCCAAAGCAGGCTCCGGATCCCATCTGCAGTGTGGAGCTGCCACACTGGGACGCAACACAACCTCCAAGAGCCCACTGATGGTTCCCAACAGTACCGGCAGTTTGCCACGTAACTTGGCTGCCACCATGCAGGACATAGAGACCAAGAGAGCGCTAGCCTTACAGCAGAAAGAGTCCTCCTTGCCTTCCACGCCTGAGTCTCCCTGCTCCACCATGGACAATCCCACAGaccgacagatagacagacagacctctGAGCCTGGGAgCCACCAGGTGATCGAGGAGCAGCGGCGTCGATTGGCTGAGCTGAAGCAGCGGGCTGCAGTGGAGGCCCAGTGCCAGTGGGATGCGCTCCACGGCTCTCAGACCCACCTCAACACCCAGTATGCCCCTTCCCATGCCCAAGGCCCTCCCATGGTGCACCACTCCATCCTGCACCACCAGCCGCCACCGGCGGGCGAGCAGCCATACGACACACTGAGTCTGGAGAGCTCTGACAGCATGGACACCAGCGTCTCCACCGGCAACAACTCAGCCTGCTCCCCCGACAACATGTCCAGTGCCAGTGGGATGGACGCGCTGAAGATCGAGGAGATGGAGAAGATGCTGAAAGAAGCCCACCTAGAGAAGGCCAGGCTCATAGAATCCAGAGAGCGTGAGAGCCATGCCCGTAGGCAgatgctggaggaggagaggaggcggcGCGAGGAGGCTGAGAAGAGGCTGCAGGAGGAGACGGTGCACAGGCAGCAACTGGTGGACAAGGAGGTGAAGATGAGAAGCAAGAACTTCTCCCAGGCCCGTCCTATGACTCGTTACCTGCCCATCCGCAAGGAGGAATTTGACCTGCGCTCCCACATCGAGTCATCCGGCCACAACGTGGAGACCTCTCACCACGTGATCCTCACAGAGAAGATGTGCAAGGGTTACCTGGTCAAGATGGGCGGCAAAATCAAGTCGTGGAAGAAACGCTGGTTTGTCTTCGACCGCCTCAAAAGGACCTTCTCCTATTACGTTGACAAGCACGAGACCAAACTGAAAGGAGTCATCTACTTCCAGGCCATTGAAGAGGTCTACTACGATCACTTGCGTATCGCCACGAAGAAAGGATTTTTCAACCTCAATTTGGCCAATCACTTTTCTGAGCTCCTGCCTCCTCAGTTtcggagagagAGCCCCAATCCCTCGTTGACCTTCTGTGTGAAGACTCATGACAGACTCTACTACATGGTGGCCCCTGCCCCGGAGGCCATGAGGATATGGATGGACGTTATAGTAACCGGAGCCGAGGGCTACACACAGTTCATGAACTAATACTGGAGACTTGCGTACATTGACATAAGGAGACTGTTTCGGCAGGAACACTTCAAGAGATTCAGGCCTTTCCTTCTAGCGCCTCTCCCAATATTGGGAAATTGCCTTTTTATTTTGTTAAGTTCATTATATCTATTTTTAAATCTCACATCTCTCACTTTACAATATAAATTTTTTCTCCGCTGGTTTTTCTACTTGCTTCTGCCCACTCATTAAAAAAGGGAGCCctggaagagacacacacactgtatataaccAAACGACATAACTGTCAGACTTTCTGCTCAAAAGCCTTTCTATATTGCCAAATGGAGATCTTGTTTTAGTTAGTCTCTTGCGTGAGACCTATTTTGTGTATCAGTAAATGTctgatagttttttttttttttttttacacacgtGGAATATTGCCAAATGACATAACAATGGTTTCATACAGATGGTCGTTTTTATGGAATACAAAGGCATTTGCCCAAATCTACTTAAGTTTATCAGTGAGCGAAAGATGTAATCATTTAAGAAATGCTTAAAAGAAATTCTATTGAAAATGGAGAATAAACCGAATTTAAATCAGTAAGACCATGACACAACACACCAACTCAGGAGTCCATACTTAATTTAAGTTCCACAGATGAAACTAGATCTTGATCCATCTCTGTGATCTTACTTTACTGAACTAGATTCCACTGTGTCCGTCTTATACTACTCCTAAAGACACACAGTCTGTTTGCCAAGTCCTGATAACTTGACCCCTTGCGTAAGCAGCCATTCCATCACTGCCAGCCTACAACACCAGGAGCTCTAGGGACTACATAAAATGAGAcaacagtacatgtcattataaTAATGCTAATCATTCTGTGCCTTGATGTGTCGTAATACTCCTAGTCTGTAACTGTTGATCGTGCTGGTTTACAATCTTTGTTAACAGTATCAGAATTCAACAGACTTgcatggggaagagagaggggagtctgACTGCTGTTTTGATGCAGCAATACACAAGTACATGTGAACAGTAACATCCCCTGAATTCCAAGTTCCATCCCCCACTACATCCTACGCTCTTGTGTTGATCTGAGATGATTGGTAAAGAGGTGGTAGCTACATATCGCTCTCTGATACGCAATGTGGAATTGTCGCCATATACTATTGCGTACACAGATCTACACAAGTGCACATGGTATATGGGCTTGTTTTCAGACTCAGGGTGCATTTCAGCTTTAATAGAACGTCAAATGATCTGGTAGCTTGACATAATCATTGTAAAGGGACTCAGACAGGCGACACGATCACAACATTTATAAATCACCATCTGAATATCTTTTTAAAGAAGACTATGCTGTGATTTTGAACATGTAAACCTGAGTGTTTAGGTTTTTTGAGAAGCCTTGTGAAATGTAGTTCTCTTTTTCTATTTATGGTTAACCTGCCTGAGATACAGTAGTACTGTAAACTGTCCAGTAGAGGAAAAGAGACTAGTGAGAAAAGACCTTAATATATTTACCTGTTTATTTTTTCCCCACACCGAAATGGGTGCAACCAAATATTCAGCATTGGGCAGAGGTATATCATAGTGTTATATATAAAAGAAAAAATGCCTGTATGAAAATGTAATTTACTCATTCAACCAGTATTGTATAAAAAGCAATTTACTTGTTTTTGTCATTTCAAAAGAATGGTCAGAATACACTTCAGTATACTTAAAAGAACACTCACAGGGTCATACAACTGTCAACACTGTGTAGAACACCATCTTCAGACTATATTATGTTGACGGTACACTGTTTTATACGGCACTTTCATGTATGGATTTTCTGGATATTGTCAGATCTATTAAAACAGAAATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2351795 lncRNA downstream 28151 15573740 ~ 15576018 (-) True G2056341
TU2351840 lncRNA downstream 51559 15552407 ~ 15552610 (-) True G2056385
TU2351825 lncRNA downstream 72517 15531362 ~ 15531652 (-) True G2056370
TU2351813 lncRNA downstream 96562 15507279 ~ 15507607 (-) True G2056359
TU2351810 lncRNA downstream 99206 15504613 ~ 15504963 (-) True LOC110507175
TU2351954 lncRNA upstream 86420 15771512 ~ 15771783 (-) True G2056492
TU2352324 lncRNA upstream 95918 15781010 ~ 15781209 (-) True G2056835
TU2352330 lncRNA upstream 108221 15793313 ~ 15793990 (-) False G2056841
TU2352331 lncRNA upstream 108221 15793313 ~ 15793990 (-) False G2056841
TU2352333 lncRNA upstream 108221 15793313 ~ 15793990 (-) True G2056841
XM_021587059.2 mRNA downstream 45624 15553670 ~ 15558545 (-) True LOC110507169
LOC110507175 mRNA downstream 81640 15502712 ~ 15522529 (-) False LOC110507175
XR_005040092.1 mRNA downstream 117324 15482577 ~ 15486845 (-) True LOC118944779
XM_021587036.2 mRNA downstream 245794 15326868 ~ 15358375 (-) True LOC110507161
XM_021587058.2 mRNA downstream 401395 15198498 ~ 15202774 (-) True LOC110507168
XM_021586958.1 mRNA upstream 83283 15768375 ~ 15769382 (-) True LOC110507085
XM_036965151.1 mRNA upstream 456633 16141725 ~ 16164147 (-) False si:dkeyp-97b10.3
XM_021587736.2 mRNA upstream 461211 16146303 ~ 16164143 (-) False si:dkeyp-97b10.3
XM_021587737.2 mRNA upstream 461211 16146303 ~ 16164143 (-) False si:dkeyp-97b10.3
XM_036965871.1 mRNA upstream 508153 16193245 ~ 16258675 (-) False ift80
TU2351551 other downstream 227654 15376215 ~ 15376515 (-) True G2056115
TU2351045 other downstream 1068929 14532987 ~ 14535240 (-) True LOC110507082
TU2349697 other downstream 1846472 13756175 ~ 13757697 (-) True LOC110507619
TU2349554 other downstream 2076734 13490771 ~ 13527435 (-) True LOC110507606
TU2349539 other downstream 2132217 13468224 ~ 13471952 (-) True G2054301
TU2353838 other upstream 1310468 16995560 ~ 16999785 (-) True LOC110507646
TU2354252 other upstream 1779429 17464521 ~ 17469821 (-) True LOC110507661
TU2354506 other upstream 2237250 17922342 ~ 17922752 (-) True G2058724
TU2358439 other upstream 5229022 20914114 ~ 20922375 (-) True LOC110507754
TU2358911 other upstream 5585075 21270167 ~ 21272688 (-) False LOC110507765

Expression Profile