RNA id: TCONS_00005178


Basic Information

Item Value
RNA id TCONS_00005178
length 1828
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_002797
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25819996 ~ 25823258 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAACCAGGAAACAATTGCAATTGATAGCTGCTGTTAAGCTGTCCTCATCTTAAAAGAGATTTTAAATGCGAACACAAAACTGGCGATGGCTGAAGGCAGGCTTACTGTGAGCCATGAAGAGTTGAGCTGTTCAATCTGTCTAGATCTACTGAACAATCCGGTGACCATCCCTTGTGGACACAACTACTGTATGAACTGTATTAGACGTCACTGGGATCAAAATGCTAATAGAGGAGTTTACAACTGTCCTCAGTGCAGACAGAACTTCGATGCAAGACCTTTTTTAGGGAGGAATATGATGGTTGCTGAAATGGTGGAGAGATTCAAGAGGACACAGACCGCTCATGTTTCTCAAATTGAAGCTGGGCCTGGAGATGTGCAGTGTGACGTCTGCCCAGGCAGAAAATATAAAGCCATCAAGAGCTGTTTGTTGTGTCTGAACTCTCTCTGTCAAATTCACTTCCAACAACATGAGGATGTTTTCGAAGGTGAGAGACACTGTTTGATAGATGCCACCGATCAGCTTCGGGACATGATCTGTCCAATACACAATGAGCTTTTGGAGATTTTTTGTCGTACTGACCAGATGAGCATTTGTATACAGTGTAAGAGGGGTATTCACAGAAACCATGATGTGTCAACAGGAGCAGACAGATCAAATCAGAGTTCTTCAACTCTCTCTGCGCCACCTGAAACGGTCAGCTTTGAGTTTGGTGCTCGTTCTTCTGCTGCTAGAAAAACCTTTTCTAAGAGACTAAAGAAAAAAATGGATGATTTCCTTAATTCTGAGGTCACAGTTGTATCCGGCTCAGTAAAGCGCTACAAAAGTCCAACTGATGGGCCCAGGAACCGGAATGAGATCCTGCAATACTCACACCAACTCTCAATGGACTCAAACACTGTGAATGGAATAATCCAGCTGTCTGCAGGGAACAGAGTGGCAACTAATAATGGCACAGTCCAGCgatatcctgatcatccagagaGATTTGATTGCTGGCCTCAGGTCTTGTgtaaagagagtgtgtgtggacgtgcATATTGGGAGGTCGAGTGGAGTGGGAGTGCTGGCGTAGGTTTATCGCTGTCCTATAACACTATTGGCAGGAAGGGAAGGGGTGATGACAGCAAATTTGGATGTAGTGACCAGTCTATAAATTTGTACTGCTCTCCTACCAAATATGCATTAtgggacaaaaacaaaaagactaAAATCAGCgtaaacacttcaaaaataaagTCCTCTAGATTAGGAGTGTATGTGGATTATAGCGCCGGAATTGTGTCCTTCTTCAGCATCTCTGACAAAATGAGACTCATCTACATATTCCCCACTACGTTCACCCAACCTGTCTATCCTGGCTTTAGGGTTTATTTTGGATCAGCAGTAAAACTCTGTGAACCAGCAGTAAACTGTAAATGATTTAGAGGTGTAATATTCAGTAACACAAAGTGGTATTTTATTTCACTACATCAATTCATGAAACATCAGGATCATCATTAATTGACCTACAAATGCATTGAAATAgttttaacaaaaaacaacacatgtttgaaggcgtgagaacagatgctcttgacagttccggaggtatttaatattataataacactaatactgaaacggtcattttagaatgaccaaaacaacatttcagatgtttttcagTGCAGTCAGCctactggtttgtccattcacacacgtCCTTATCctcacatgatctcttattacaaaatcacatgacttttttaatatgcatactggaatttgtttgctGTAAATGTTTACATCGTAGTTTTTGCTTATcgaataaaatgtttattcta

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070620-19 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDART00000064327

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005171 lncRNA downstream 120637 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00005764 lncRNA downstream 128326 25690872 ~ 25691670 (-) True XLOC_002793
TCONS_00005763 lncRNA downstream 132778 25686901 ~ 25687218 (-) True XLOC_002792
TCONS_00005168 lncRNA downstream 244423 25574557 ~ 25575573 (-) False XLOC_002791
TCONS_00005165 lncRNA downstream 249367 25523688 ~ 25570629 (-) True XLOC_002789
TCONS_00006054 lncRNA upstream 309211 26132469 ~ 26142597 (-) False XLOC_002799
TCONS_00005184 lncRNA upstream 317812 26141070 ~ 26142597 (-) True XLOC_002799
TCONS_00006055 lncRNA upstream 617794 26441052 ~ 26447113 (-) False XLOC_002802
TCONS_00006056 lncRNA upstream 617794 26441052 ~ 26447171 (-) True XLOC_002802
TCONS_00006057 lncRNA upstream 1013578 26836836 ~ 26872413 (-) True XLOC_002807
TCONS_00005177 mRNA downstream 2142 25771031 ~ 25817854 (-) True XLOC_002796
TCONS_00005176 mRNA downstream 3438 25770467 ~ 25816558 (-) False XLOC_002796
TCONS_00005175 mRNA downstream 50662 25762196 ~ 25769334 (-) True XLOC_002795
TCONS_00005172 mRNA downstream 103043 25697636 ~ 25716953 (-) False XLOC_002794
TCONS_00005174 mRNA downstream 103043 25701358 ~ 25716953 (-) True XLOC_002794
TCONS_00005179 mRNA upstream 6004 25829262 ~ 25860102 (-) False XLOC_002798
TCONS_00005180 mRNA upstream 7015 25830273 ~ 25852517 (-) True XLOC_002798
TCONS_00005181 mRNA upstream 306572 26129830 ~ 26179805 (-) False XLOC_002799
TCONS_00005182 mRNA upstream 307598 26130856 ~ 26163989 (-) False XLOC_002799
TCONS_00005185 mRNA upstream 367549 26190807 ~ 26202766 (-) False XLOC_002800
TCONS_00005164 other downstream 320522 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005133 other downstream 1364264 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 1436615 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 1440220 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 2988567 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005183 other upstream 309211 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 373026 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 920338 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 1183013 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 1346698 27169956 ~ 27170072 (-) True XLOC_002817

Expression Profile

//