RNA id: XM_021587728.2


Basic Information

Item Value
RNA id XM_021587728.2
length 4357
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC110507625
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 15745005 ~ 15768122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCGCTATTAACCTTTTCCCTTCCATTCCAAAACACAGACGAAGATGGCGGAAGAGCGACAGAAGCTTTTGGACGAGGAAGGGGGTATCTCTTCTTCAGATCCCAGAAATGAAAGCGGACCGGTCAAACCGATGTCCGCGCTCTGTGACCCGAGACAACTGCTTCATCGCATTTTCGTCCTGCTTTTTATGTGCTTTCTCGGATTCGGAAGTTACTTCTGTTACGATAACCCCGCTGCTTTGCAGACTCAAGTGATACAGGACATGAAGCTCAACACATCCATGTTCATGCAGCTCTATGCCTGGTACTCCTGGCCCAACGTGGTGCTCTGTTTCCTGGGGGGCTTCCTGCTCGACAGGGTCTTTGGAATCAGGCTAGGAACGATAATCTTCGCCTTGTTTGTCTGCGTTGGACAGGTTATAGTTGCTGTTGGGGCACTTCTAGATCTATTCTGGTTAATGGAGATTGGACGCTTTGTGTTTGGGATCGGCGGTGAGTCCCTGGCGGTGGCCCAGAACACCTATGCAGTGAACTGGTTCAAAGGGAAGGAACTCAACCTGGTGTTTGGTCTTCAGCTCAGCATGGCCAGGCTGGGTAGCACGGTCAACATGAACATCATGGGCTCGGTGTACAACCGTGTCGCTGACCTGGTAGGCTTGACAGGACACACCACTCTCGGAGTCTCACTCATGATCGctgGGGCGACCTGTATATTCTCTCTGGTTTGTGCTCTGGTGTTGGGCTATCTGGACAAGCGAGCCGAGAGGATCCTCAACAAGGAACAGGGAGGGACCGgggAAGTGATCAAGCTGACGGATGTGAAGGACTTCCCCTTCCCACTGTGGCTCATCTTCATCATCTGTGTGGGCTACTACGTGGCCATCTTCCCCTTCATCGGATTGGGACAGGTTTTCTTCATTGAAAAGTTCAACTTCTCACCAGCTGAAGCAAGAGCAATCAACAGTATTGTGTACATCATCTCGGCCCCAGCCTCTCCTGTGTTGGGCTTCATGGTGGACAGGATAGGGAAGAATGTAATCTGGGTGCTGTGTGCCGTCGTCACGACGCTCATAGCCCACATGATGCTCGCCTTCACCTTCTGGAACCCCTGGATCGCCATGTCCCTGTTGGGTTTGTCCTACTCCCTGCTGGCCTGTGCCCTGTGGCCCATGGTGGCCTTCGTGGTGCCAGAGCATCAGCTGGGGACAGCCTATGGCTTCATGCAGTCCATCCAGAACCTGGGCCTGGCTCTGATCTCCATGGCAGCAGGATCTATTCTGGACAACAAGGGATACCTCTTCCTGGAGGTCTTCTTCAGCGCCTGTGTCTGCTtggCACTGATTGCAGTAGTGATGCTGTACTTTGTTGATTGTCTACGAGgaGGAGATCTGAACCTCTCAGCCTCTGCCCGGGCAAAACTCCTGAAGTGCTCCAATTCAGATTCAGAGTGAGCGTGCACACAGTCTTGGGCCACAGCTGTCAATCACCCCCTAGGGACCCTACTGGCTCCTCCCATCTGCACACTGACCCATTCCTGCAACGTAACTGATCCCTCCCAACAACATACTGACCCATCACAGCTCAGATGCTGACCCCTCTGCTCTGACATCACATACCGACTCCTCCTCACTGACTCCTCCCTCCTGTGGCTGTGTGAGGGCTGGCTAATGACTGActggtgtttgtgtgcatgtttggAACCTCAAACCTCAGCACCAATCACACTTTAATGTCAGTAGAGTGGGGTACCAGAAAGCACTTTAAGCTGACTTTGAAAGGTTTTTAAATGTCTGTGGAACTAGGCCCCAGGCTGAGTGACTTTTACTTCAGGGATGTAAAGTTCTTCACCGATAATGTACGCCTGGATGTGTCTTATTGCTTAGCAAAATCATCTATGCTATAAGAGGTGAACGAACTGGTTCAATATTcttagaaaatatattttaatcatCTCTCTAAAACCAGGGTGTTAGAAAGGACTTAATTGTCCATCAATGTTATATTATGCATGttttgttaaatgtatattgttcGGAAAGGTCTTTACATTTTTACTTCAGGTTTTTGATCATCTGAAACAAACAGTTGGTGTGCTTAACTTTTAAACACCCACAAATGAATAATCTGTGTAATCATCATGGAGAAAATGTCAAACTGGCAACCGCAAAACCAACCCATCTCCTTTCCCGGCGTTTGCATACAGTGAGGTCATTCTCAATAGTAATCATATACGCATCATCTAGTTTGACAGATTTATGCTGGACCATTTCAGAATCTGCATTGTGTTAAATTCTTTATAGCGCCGTTCCTTCATTAAATTCCTTTTCTCTTGGCTCGTAAAACTTGACTCTGTCACACCATCAAGGCTAAGGCAGACCTTGTCAAAGTGATAAAGGAATTTAAAGGGGAAACATTTTTGATAGTATTCACCCAATGTATAATTACGTTCCATTTCTTAACTTTTAACTCAAATTTTGAATGCAGCAGTTTTTAGTGACCTTCATGAAAATGACCTGGCTTATGTCTAAGAAGAAGAACTTTGAAGAAACCTAAAACATTGGGAaagggggacacctagtcagttatacaactgaatgcattcaactgaaatgtgtcttctgcatttaacccaacccctctgaatcagaggtgtggGAGGCTGACTTAACATTGGCAATTGGGTGGAAACCCTCTTTGCTGTACAACTGAATGAaggataaatattttttttgctgaTATTTATTGACCACTCTCAGGAAATTGCCAAGAGACACTTTCATGTGTTGAAAACCACTAAATCAAATGATAATTCTGTCAATCACTTTTGATGATAGTCGTTCTCTTGTAATGAATGATCGCTTCAAATTCTTTAACCCTGAATCAGTTGTCTGCCGGACATCACGAGCTTTAACTAAGTGGCTTGCCGTAGCATAGTATTAGGTCAAGTATTGTGGTGGAGGACGCCTGTCCATATACCACTAAAGTTGTgatggctgtttgtctttgttaGATCCAGAATAGTCTCTGTGTAAATTGCAATGAGTGCTGTCTGTTTAGAGTTGATCTCTCTAACAGCTCTAAATAACATATGTGTTCTATGGGTACTACTGCCTAGAGCAAagatctccaaccctgttcctggagagaaattcatattttattttttgcaaTAAAAAATGACAAACTACATGTACTTTTAGGCTATTTTAAATTGCCACAGTTAAATTTATGAAGGAATGAAAAAAATACCTGTTTTTGTTACATATGTTCACTGTGTTTGTTAAAGAACATTATCAGGCCATTGTGTCCTTGCCAGAACTGATTGTCATTCTGTCTGATCAAATGTACTTTTATTTACTACAGTATTGTCTCAGGACGTCAAATAAACTTTTGTATTTTTACCATGATGATTATGCCACTCCCCCTGCTGTCCTTGTAGAGTTGAAAGGTGTCAGAGGGTCAGTCAGCAGACTGGGGAAAAGCTGGCCAAACTCAGGCCCATGTCTGGTTTTGGCCTGCGCAACCGTTACCTGTCCAGACTAGGAGCTCAGGTACACACAAACACCGTATGCAGATGGATGCTAAATTCCCTTCTACTTCCTCCAGCTCCCAGATCACtgctgtaccccccccccccccccccccccagtcttcaCTGGCACACAGAAGTGTACTGAAGTGATGCGGCCTACACTGCACAACCCCCCTCAACTTAGAAATTCAGCCTGTGTCCATGTCTCTGGACAAAAGGTACTTTCAGGTGTTGACCTGACGTAGAACTGATAAGCTACTGCTGTATTTTGTATATGTTGCTGTGAAGCCACACGTGCCTTTTTGTTTCTGTATTACTGTTTCTAAGCGAATCACAAAATTACATTTGATGGTGTAAATGAGCTACTATAGACATCGTAACTATGTTTGTATCTTGAAAGTACTATTTGGTGTAATAATGTATGTTTTCCATGCCCTGTACAGTAAGTGTGAAGTCTTGAGTaagtgtatttattttttgtctgCATGGCCCTCAGAAATGTGGATATGGTTATCAACTGTGCCAGCAGCAGAGGGCACTATTTATCTGTGATACAATATGAAAGTCAACGTTGGAGTCCATCTGAGTTTGAATGGACTACCTTTTTGTTGCACATGCCTACAGGTGAGGATGTTACCTTCATGACTGAATACAGCCATTGCCTTTATTGGTATGTGACTGAGAAATGTGTATGTAAATTGCACTATATTTAAGTGTCAGTAAGATATTGAAGGTGTTTGCTTTGGTATTGTAATGAGTTCTGTACTTTGTTGTTTGTGAAATGGAAAATCATGTGGTTCCAATAAACTATCTGAGAAAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2351919 lncRNA upstream 901 15743600 ~ 15744104 (+) True G2056460
TU2351917 lncRNA upstream 2302 15742405 ~ 15742703 (+) True G2056458
TU2351642 lncRNA upstream 179646 15564269 ~ 15565359 (+) True G2056200
TU2351674 lncRNA upstream 203115 15541661 ~ 15541890 (+) True G2056232
TU2351672 lncRNA upstream 204850 15539857 ~ 15540155 (+) True G2056230
TU2351973 lncRNA downstream 24345 15792467 ~ 15793101 (+) True G2056510
TU2351979 lncRNA downstream 46391 15814513 ~ 15814725 (+) True G2056516
TU2351999 lncRNA downstream 83551 15851673 ~ 15851883 (+) True G2056535
TU2352012 lncRNA downstream 112412 15880534 ~ 15880968 (+) True G2056546
TU2352015 lncRNA downstream 118136 15886258 ~ 15886496 (+) True G2056549
XM_036965761.1 mRNA upstream 140844 15572382 ~ 15604161 (+) False LOC110507160
XM_036965762.1 mRNA upstream 140844 15572382 ~ 15604161 (+) False LOC110507160
XM_036965763.1 mRNA upstream 140844 15572382 ~ 15604161 (+) False LOC110507160
XM_036965764.1 mRNA upstream 140844 15572383 ~ 15604161 (+) True LOC110507160
XM_021587072.2 mRNA upstream 257241 15483075 ~ 15487764 (+) False LOC110507176
XM_036965812.1 mRNA downstream 8083 15776205 ~ 16131560 (+) False LOC110507626
XM_021587733.2 mRNA downstream 301506 16069628 ~ 16131560 (+) False LOC110507626
XM_036965813.1 mRNA downstream 302426 16070548 ~ 16131560 (+) False LOC110507626
XM_021587732.2 mRNA downstream 303247 16071369 ~ 16131560 (+) False LOC110507626
XM_021587734.2 mRNA downstream 333072 16101194 ~ 16131560 (+) False LOC110507626
TU2351702 other upstream 147354 15597033 ~ 15597651 (+) True G2056256
TU2350609 other upstream 911417 14825520 ~ 14833588 (+) True LOC110507180
TU2348868 other upstream 2169510 13554740 ~ 13575495 (+) True LOC110507618
TU2348584 other upstream 2766082 12978527 ~ 12978923 (+) True G2053443
TU2347079 other upstream 3305527 12437959 ~ 12439478 (+) True nudt8
TU2351964 other downstream 301448 16069570 ~ 16077339 (+) True LOC110507626
TU2352309 other downstream 606144 16374266 ~ 16376043 (+) True G2056820
TU2352672 other downstream 622899 16391021 ~ 16410369 (+) True LOC110507087
TU2353191 other downstream 1444988 17213110 ~ 17216543 (+) False G2057561
TU2353193 other downstream 1444988 17213110 ~ 17216518 (+) False G2057561

Expression Profile