RNA id: XM_036964635.1



Basic Information


Item Value
RNA id XM_036964635.1
length 840
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC110507098
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 16652538 ~ 16653476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGAGAACTCAACCCAAGTCaagttattttatatttttggctTACAAGAGACATTTATCAACAAATCGGTCTATTTTACCTTGTCTCTTATCACATACCTTCTCATCATCACTGTGAATCTGACTCTGATCATAACAATCATTCAGGAGAAAGGTCTCCATGAGCCCATGTATATCTTTCTGTGTAGTTTGTGTGTCAATGGATTGTATGGAACTGCTGGTTTCTACCCCAAGTTCTTACTGGACCTTCAGTCAGATGTTCAGGTGATATCTTATGGTGGATGTTTCACTCAAGCCTATGTAATATACACATCTGTCATGTGTGAACTTTCTACTCTAACAGTGATGTCTTACGACAGGTATGTGGCAATATGTAGACCACTACTATACCATAACATTGTGACATCTTTAACTATTAGAAAGTTACTCTTATTGTCTTGGTGTTATCCTTTATTTATAGCACTCATAGCACTTAGTTTAGCTGTCAGAATTCCTTTGTGTGGATCTCGTATTGATAAACTCTTCTGTGACATTCCGTCTATACTGAAACATGCATGTTCACCCATAACCATCAACCAGATTTTGAACAAATTTGTAATAGTGGTTCATGTTTTACAGATACTATTCATTGTATTTTCTTACTTTACCCTGTTTGACACATTGCAAGGATGGAATAGTAGTGTAAATATTACGCTCAATATGCGTAATGCAATGGCTGTGCAATTCCTTGTTATACCACCTGTCTTTAACCCTGTCATATATGGACTTAACCTCCAGCAGATTCGAAGGGCCATTTTTAGAAAGTGTAATGCACATAAAATCATTGATATGAGACGTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2352726 lncRNA upstream 184290 16442577 ~ 16468248 (+) True G2057174
TU2352667 lncRNA upstream 258192 16391021 ~ 16394346 (+) False LOC110507087
TU2352663 lncRNA upstream 261606 16390566 ~ 16390932 (+) True LOC110507086
TU2352289 lncRNA upstream 330674 16321206 ~ 16321864 (+) True G2056801
TU2352277 lncRNA upstream 348501 16303455 ~ 16304037 (+) True G2056789
TU2352865 lncRNA downstream 17602 16671078 ~ 16672105 (+) False G2057302
TU2352866 lncRNA downstream 17602 16671078 ~ 16677588 (+) False G2057302
TU2352868 lncRNA downstream 18380 16671856 ~ 16672789 (+) False G2057302
TU2352869 lncRNA downstream 19846 16673322 ~ 16674507 (+) True G2057302
TU2352871 lncRNA downstream 36108 16689584 ~ 16690727 (+) True G2057304
XM_036964634.1 mRNA upstream 25186 16622542 ~ 16627352 (+) True LOC110507100
LOC110507099 mRNA upstream 41381 16610416 ~ 16611157 (+) True LOC110507099
XM_036964633.1 mRNA upstream 45443 16598218 ~ 16607095 (+) True LOC118944640
LOC118944639 mRNA upstream 55157 16592081 ~ 16597381 (+) True LOC118944639
XM_021586966.2 mRNA upstream 97232 16541861 ~ 16555306 (+) True LOC110507096
XM_021586971.2 mRNA downstream 4287 16657763 ~ 16658702 (+) True LOC110507103
XM_036965679.1 mRNA downstream 24240 16677716 ~ 16688420 (+) True LOC110507104
XM_021587758.2 mRNA downstream 52332 16705808 ~ 16721477 (+) False LOC110507643
XM_021587756.2 mRNA downstream 57491 16710967 ~ 16721477 (+) False LOC110507643
XM_021587760.2 mRNA downstream 57491 16710967 ~ 16721477 (+) False LOC110507643
TU2352672 other upstream 242169 16391021 ~ 16410369 (+) True LOC110507087
TU2352309 other upstream 276495 16374266 ~ 16376043 (+) True G2056820
TU2351964 other upstream 575199 16069570 ~ 16077339 (+) True LOC110507626
TU2351702 other upstream 1054887 15597033 ~ 15597651 (+) True G2056256
TU2350609 other upstream 1818950 14825520 ~ 14833588 (+) True LOC110507180
TU2353191 other downstream 559634 17213110 ~ 17216543 (+) False G2057561
TU2353193 other downstream 559634 17213110 ~ 17216518 (+) False G2057561
TU2353439 other downstream 902028 17555504 ~ 17566384 (+) False G2057788
TU2353443 other downstream 902028 17555504 ~ 17566384 (+) False G2057788
TU2353453 other downstream 902028 17555504 ~ 17566384 (+) True G2057788

Expression Profile