RNA id: XM_021587762.2


Basic Information

Item Value
RNA id XM_021587762.2
length 2442
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC110507643
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 16705808 ~ 16721477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGGAAGCCAGTCAAGATGCCTTTGACAGAGCCAGGCTGCAGCTGATCAAAGACGGCTATGAGAAGGCCTTTGAGTGCATCAACAGGGGCCTGACCGAGGATGAAGCTGGCCACAAGGCCCAGGCCCTGGCCCAGTACACACAGGGACGCCAGCACCTCCTCCGGGCCATCAGTGTGCCCTCACAGGGGCATGAGTGTGTGGGGTGCTCCTGGGAGTCAGCCCGCCAGATGCAGCACAAGATGCAGGAGACTCTGAACAACATCACCACTCGATTGGCGGTCCTAGAGACCAGCCCAGACCCTGAGTTCCCACCACCTCTAGATGCCTCTAATGGAGTCCCAGGGACAGCCTCTAACTCAAACCTCTACCCCAAACTGGAGAAGGAGAAACCAGAGCGGCTGTCTCCACCCAAGCTGCTGATGATTAACCGCCAAAGTGGAGCTGTGGGAGGCAGTGTGTTTCCCTCCTTGCCTCTTTCTCCCactagacagtctgtggtgcctGGCGAGCTGCCCCCAGCCTACTCTTCCCAGGCGGCTGACGGCCACCTGACTATCTCCTACGGGACAGAGTCTGGAGAAATGTCGCTGGTGGGAGAGGAGTTCTACAGCCAcatgtccccctctcccccctctcctcatagcctgggggaggatggagaggaacTCTTCTTCCTGCCTCACGGGGTACAGATATTCTTTGTCACACCTGACGGCCAGGTCAGTGCTCCCTCCTACCCAGGGTACCTGCGGATGGTCAAGTTCACCAGCCAGCAGTCAGAGAGAGTGCCCAACCGGCCCCCAGCCTTCCTGCAGGTGTGTGATTGGCTGTACCCGCTGATGGCCACTGACTCCCCCGTCCTGCTGTGTAACACAGGGGTGTTCATGTTCCCCGACATGATGGCGTCTGCCCCGGGGTCCTACGTGGGCGTTGTACTGTCCTCTGAACTGTCTATAGAAGACAGACAGCTGTTCCAGGACCTGCTGTCCCAGATGACAGACCTCCGGGTGCAGGCTCCAAATGAGGCAGCAGACAGCATCAACCTGAGCCAGAAGGTGTCTATTGCTCCCCCCGAAGAAGAGGAGgccccagcagcagcagaggaggaggagaagaacctGCCAGAGTGGAGTGAGAAAGTGGCCAGCGGCATCCTCACAGGGGCATCGTGGCTGAGCTGGGGCCTGGTGAAGGGGGCTGAGTTCACTGGCATAGCCATCCAGAAGGGGGCGTCCAAACTGCGGGAGCACATCACCCCAGAGGACAAGCCAGCCCACGTCAGCCCCTCTGTCTCCAAGGGATTGCATGTAGCCAAACAGGCCACCGGGGGCGCTGTCCGCGTCAGCCAGTTCCTTGTGGACGGTGTGTGTATGGTGGcagggtgtgtgggtagagagCTAGCTCCCCACGTGAAGAAACATGGAGGCAAGTTGGTCCCGGAGTCCATGAAGAAAGACAAAGATGGACGATCCAACATTGATGGAGCCATGGTGGTGGCTGCTAGCGGAGTTCAAGGCTTCGCTACCATGTGGACTGGCTTGGAAGTAGCAGCAAAGAACATCACCGTCTCTGTTGCCTCCGAAACCGTCAACACTGTCAAGCATAAATTTAGGGGTCTACAAAACATCTTAGACCCTCCTAATGACAAGAAGACATGTATTTAAAGCCAGCCTTTAATGAACCCTCCTTAATAACGAGCAGCATGGCCAAGGCTTAGCCTCTGTTTCTAGGTGGTCTGAATGTAAAGCTGCTAGATTCACCTGTACTCTCTCAACAGGCTACTCTTCTATCCTACTGGGCTATGCTCCCGTAATTCAACATGTGGCTGACACTGATTTCTCTGGTGTCTAACTAACCAACTCTTTTTCCTGACTTTATTGAAAACAATATAACTATTTCTAATACATAATCATAGTATgaattgatgcacttattgaatTGATGTGTATTATCTGTAGAAATAAGTGCAGTCACCAGCCCCACAATATAATCAGTTGTATATTTATAGATTTATGAATAGTCAGACAACTTCAATAATTCTGTTGAATTCATGATCTGCATGGGTGGGGGCTTTAATGCTAGTTGCATGTTGCTGTCCTTGCTGTTCCCTGTAATTGCCCTCCTTCCTGCAGCCCTCCCCCTCTCAACAGTTGGTTGTGTGTGATTATAAGGTATGGCGCTGCAGCCGGCCAGGCCACAGACCATGCTGTGAACTCAGCCATTAACATGGGTGTCACCGCCTTCAACATTGACAACCTGGGCATTAAAGCTGCGGTGAAGAAGACTGGCAAACAGACGGCCGTGGCCATCCTGGAGGACTACCAGCTACGGGACCCTAATACTAACCAGAAACAAGTAGAGAAACGGGACAAATAGGCCCCATCCGGGAACaagtctacgtcccaaatggcaccctattccatattgtcactactttt

Function

GO: NA

KEGG:

id description
K19366 SPG20; spartin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2352871 lncRNA upstream 21016 16689584 ~ 16690727 (+) True G2057304
TU2352866 lncRNA upstream 34155 16671078 ~ 16677588 (+) False G2057302
TU2352869 lncRNA upstream 37236 16673322 ~ 16674507 (+) True G2057302
TU2352868 lncRNA upstream 38954 16671856 ~ 16672789 (+) False G2057302
TU2352865 lncRNA upstream 39638 16671078 ~ 16672105 (+) False G2057302
TU2353000 lncRNA downstream 176893 16896399 ~ 16900472 (+) True G2057416
TU2353062 lncRNA downstream 276054 16995560 ~ 16999787 (+) False G2057476
TU2353065 lncRNA downstream 276054 16995560 ~ 16999787 (+) False G2057476
TU2353068 lncRNA downstream 276054 16995560 ~ 16999787 (+) False G2057476
TU2353069 lncRNA downstream 276054 16995560 ~ 16999787 (+) False G2057476
XM_036965679.1 mRNA upstream 23323 16677716 ~ 16688420 (+) True LOC110507104
XM_021586971.2 mRNA upstream 53041 16657763 ~ 16658702 (+) True LOC110507103
XM_036964635.1 mRNA upstream 58267 16652538 ~ 16653476 (+) True LOC110507098
XM_036964634.1 mRNA upstream 84391 16622542 ~ 16627352 (+) True LOC110507100
LOC110507099 mRNA upstream 100586 16610416 ~ 16611157 (+) True LOC110507099
XM_036965412.1 mRNA downstream 6739 16726245 ~ 16747680 (+) False LOC110507645
XM_036965411.1 mRNA downstream 6740 16726246 ~ 16747680 (+) True LOC110507645
XM_021587772.2 mRNA downstream 146955 16866461 ~ 16868814 (+) True LOC110507649
trnag-ucc-232 mRNA downstream 487330 17206836 ~ 17206907 (+) True trnag-ucc-232
XM_021587783.2 mRNA downstream 499982 17219488 ~ 17227085 (+) False LOC110507653
TU2352672 other upstream 301374 16391021 ~ 16410369 (+) True LOC110507087
TU2352309 other upstream 335700 16374266 ~ 16376043 (+) True G2056820
TU2351964 other upstream 634404 16069570 ~ 16077339 (+) True LOC110507626
TU2351702 other upstream 1114092 15597033 ~ 15597651 (+) True G2056256
TU2350609 other upstream 1878155 14825520 ~ 14833588 (+) True LOC110507180
TU2353191 other downstream 493604 17213110 ~ 17216543 (+) False G2057561
TU2353193 other downstream 493604 17213110 ~ 17216518 (+) False G2057561
TU2353439 other downstream 835998 17555504 ~ 17566384 (+) False G2057788
TU2353443 other downstream 835998 17555504 ~ 17566384 (+) False G2057788
TU2353453 other downstream 835998 17555504 ~ 17566384 (+) True G2057788

Expression Profile