RNA id: XM_036965412.1


Basic Information

Item Value
RNA id XM_036965412.1
length 3570
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110507645
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 16726245 ~ 16747680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTGCGCCACGCCCCTTGTCTCAGCGCATCTAGAGGGctggagagaagatgagagagaagggagcGTGATAGCGAGGTGAGATGCTTGGTGCTTCCCTTGGAAGACCTGCATGTCAATGAGTGACGGCCAAATGGAAATCACTGCTAGAGACAGAAACCAGCTGCAGCTCGTGCTGCTCACACTTGCTCAATCAAAGAGCAACAAAGGGGCGGATGCTTCTTCTGCCGCTCAGGCTGGCCATCATACTACACATATCAGCACTGACACAGCCTATTGGAAAGCTGATATATGCAATTGCTAAACACTGACACGGTTGACTGCATCCGACTTCAATTAAAGTCATGGAGCTGGAGCACTTTGACGAGCGGGAGAAAGCCCAGAGAAACACCCGCAGAGGCTCCAGGAACAACGGGCTGCAGAGCCCCACTCGCAGCGCCCACTGTAGTCTGTACAGGACCCGGACACTGCAGTCTCTAGCCTCAGAGAAGAAGGCCAAAAAGGTCCGCTTTTATCGCAATGGAGACCGCTACTTCAAAGGGATTGTCTACGCTATTTCCCAGGACAGGTTCCGGTCTATAGAAGCCCTTTTGGCTGATCTGACCCGCTCCCTGTCAGATAATGTGAATATGCCCCAGGGGGTCCGGACCATCTACTCTATCGACGGGGCCAAGAGAATATccagcatggagcagctggaGGAAGGAGAGAGCTATGTGTGTGGCTCCATAGAGTCATACAAGAAGCTGGACTACACTAAGAATGTCAACCCCAGCTGGTCAGTTGGGTTGAAGACAGCTGTGGCTGCCTCTGCACGTGGTCCCCCATCCCTGGGCAGCGCCAAGGCTGGGGCCCCGGAGACCAGGGAGAGTAAGGACTTCATTCGGCCCAAACTGGTCACCATCATCCGCAGCGGGGTGAAGCCTCGTAAGGCCATCCGCATCCTCCTCAACAAGAAGACTGCCCACTCCTTTGAACAGGTTCTCTCTGACATCACAGACGCCATCAAGCTGGACTCTGGGGTTGTCAAGAGACTGTACACCGTGGACGGGAAGCTGgtGACATGCCTTCAGGACTTCTTTGGTGACGATGACATCTTTATGGCCTGTGGTCCAGAGAAGTTTCGCTACCAAGATGACTTCCTCTTAGATGAGAGTGAGTGTAGGGTGGTGAAGTCGACGTCATATGGTCGGATCTCCTCTCTGCTAGGACGCTACTCACCCAGAGGAGGAGGCTCACCCAGAGGAGGAGGCTCACCCAGAGGAGGTGGCTCACGCCGAAGCTCAGGCTCAGCCAATGGGACGGTAGGCAGTCAGCTGTCGACTCCTCGATCTGGGAagtcccccagcccctctcctaCCAGTCCTGCCAGCCTCCGACGACACAGGgggtCCCAACACAGTGGCTCATCCCTGTCTCTAGCCTCCACCAAGGTGTGTAGCTCCATGGATGAGGGCGACGGAGCAGGAAGTGAAGCGGAGCTGAACCTGCTGAGTGATGAATGtccctccgtccctccgtccATCGCTGAGAGGTACAAGGTGGGGAGGACTTTAGGTGACGGTACCTTTGCTGTTGTCAGAGAGTGTGTGGAGAGATGTACGGGCAGAGAATACGCCCTGAAGATCATCAACAAAGTAAAATGTAGGGGAAAGGAACACATGATCCAGAACGAGGTGTCCATCCTCCGTCGTGTCAAACATCCCAACATTGTCCTGCTGATCGAGGAAATGGACACCTACAGCGAGCTTTACCTGGTCATGGAGCTGGTCAAGGGGGGTGACCTATTTGATTCCATCACCTCCTCgaataaatacacagagagagatgcaaGTGGGATGATTTATAACCTGGCCAGTGCCATCAAGTATCTGCACAGCCTCAACATCGTACACAGAGACATcaaacctgagaacctgctgGTGTATGAGCATCAGGATGGTAGCAAGTCTCTGAAGTTGGGAGACTTTGGCTTGGCTAGCCTGGTGGATGGACTCCTCTACCTGGTCTGTGGCACCCCCACCTATGTAGCACCTGAGATCATCGCTGAGACAGGGTACGGGCTGAAGGTTGATATCTGGGCAGCTGGCGTAATCACATACATTCTGCTGTGTGGCTTCCCTCCCTTCAGTGGTGAGGACCAGGAGAATCTGTTGGACCAGATTCTAACGGGACAACTAGCCTTCCCTTCACCGTCCTGGGACAACATGTCTGTCACTGCTAAGGAGCTGATCACAGGGATGCTGCAGGTGAAGGTGGAACAGAGATACACAGCTCTGCAGGTTCTGGATCACCCCTGGATCAATGATGATGGGCGATTAGTGAACGACCAGCAGCTCTCTGTGGCTGGGAAGATTAAGAAACACTTCAACACTGGTCCTAAAGCCTGCAGCACCACTGCTGGGGTGTCTGTTATCACAaCCACCCCTCTTGATAAGGAGCGGGAGGTTTTCAGACTAAGACACCAGCAGGGTGTGAGGTTGAAGCCCCGCCCCCGCCTCCAGCCCCATCCCCAACCAACTGGCTTCCCCACTAGCGCCAGTCAAAGCTCCACCCACAGATCCAACAACCCTGCACTTTCTCCCGCTGATTTCACTTCAGAGTCAGAAGATTACTCCCCCagcccctcccccacctcccctagCTCTGCTGACACCGTCcgctcccccacctcccccttcTAGACTccaaaggaagagagaggggagaaaggagagaaaggaacgaGGAAGGACAGGGGGCACGTATCCCTGTATTCACGACGACAGTCTGTCAAGATGCCTGCCAATTACTTAAACATTGATTTGCCATTCCGGCTACATTGTCAGTTAACCCTAAGATTCACTGGGGTCAGAGCCATTCACAGAAATCAGTtagggtggggttagggttagaggttagggtcaAGGTTAAAGGTGTATTCTGGATGGGTTCTGCTCTGGCCCTGAGAGATTACTAAGGCAGAGAATCTGTATCTGCTTATCTTTTCTAAgacaccacacagacatacagtagttAAGCCATTTTTCAGGAAACACTGACTCGTCCGCTGAAGTCTCCTGGTGTTGGGAGATGAGTACTGCAGGGCAACCAACCTGCTAACACAACAACTATGTAAACCTACAGATCAAAATCTTCCATTTAACTTGACGGGACCTCATACGCCCTGAATAGGGCATCTTAAGTATTTCTGTGATTAAACATACATTTTgtaaaataataatgataataataatgacgTCGGGTCCTTGAAAAGCACTATATAAATTCAAAAACATTTATTATTCATTTTGAAAATGTTTGCATCCAGTCAGTTATCTATTTCAGTGAAGTGAAATAGCATCCAATTCATTACAACTTGTTCAGAAAAACACTTCCAAGTCAAAAGATGTAATAGTCAGAACATTCAATAAGACATGCTGTATGACACCTGTCATGTAAAGATATAatgtatgtatactgaacaaaaaatataaacgccacatgtaaagtgttggtcccatgtcccatgagctgaaataaaagatcacagaaatgttctatatgcataaaaagcttatttctctaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2352882 lncRNA upstream 12061 16713731 ~ 16714184 (+) True G2057315
TU2352871 lncRNA upstream 35518 16689584 ~ 16690727 (+) True G2057304
TU2352866 lncRNA upstream 48657 16671078 ~ 16677588 (+) False G2057302
TU2352869 lncRNA upstream 51738 16673322 ~ 16674507 (+) True G2057302
TU2352868 lncRNA upstream 53456 16671856 ~ 16672789 (+) False G2057302
TU2353000 lncRNA downstream 148719 16896399 ~ 16900472 (+) True G2057416
TU2353062 lncRNA downstream 247880 16995560 ~ 16999787 (+) False G2057476
TU2353065 lncRNA downstream 247880 16995560 ~ 16999787 (+) False G2057476
TU2353068 lncRNA downstream 247880 16995560 ~ 16999787 (+) False G2057476
TU2353069 lncRNA downstream 247880 16995560 ~ 16999787 (+) False G2057476
XM_021587758.2 mRNA upstream 4768 16705808 ~ 16721477 (+) False LOC110507643
XM_021587756.2 mRNA upstream 4768 16710967 ~ 16721477 (+) False LOC110507643
XM_021587760.2 mRNA upstream 4768 16710967 ~ 16721477 (+) False LOC110507643
XM_021587761.2 mRNA upstream 4768 16710967 ~ 16721477 (+) False LOC110507643
XM_021587757.2 mRNA upstream 4768 16710970 ~ 16721477 (+) False LOC110507643
XM_021587772.2 mRNA downstream 118781 16866461 ~ 16868814 (+) True LOC110507649
trnag-ucc-232 mRNA downstream 459156 17206836 ~ 17206907 (+) True trnag-ucc-232
XM_021587783.2 mRNA downstream 471808 17219488 ~ 17227085 (+) False LOC110507653
XM_021587784.2 mRNA downstream 471876 17219556 ~ 17227085 (+) True LOC110507653
XM_036965241.1 mRNA downstream 499626 17247306 ~ 17260399 (+) False LOC110507657
TU2352672 other upstream 315876 16391021 ~ 16410369 (+) True LOC110507087
TU2352309 other upstream 350202 16374266 ~ 16376043 (+) True G2056820
TU2351964 other upstream 648906 16069570 ~ 16077339 (+) True LOC110507626
TU2351702 other upstream 1128594 15597033 ~ 15597651 (+) True G2056256
TU2350609 other upstream 1892657 14825520 ~ 14833588 (+) True LOC110507180
TU2353191 other downstream 465430 17213110 ~ 17216543 (+) False G2057561
TU2353193 other downstream 465430 17213110 ~ 17216518 (+) False G2057561
TU2353439 other downstream 807824 17555504 ~ 17566384 (+) False G2057788
TU2353443 other downstream 807824 17555504 ~ 17566384 (+) False G2057788
TU2353453 other downstream 807824 17555504 ~ 17566384 (+) True G2057788

Expression Profile