RNA id: XM_036965144.1


Basic Information

Item Value
RNA id XM_036965144.1
length 4392
RNA type mRNA
GC content 0.57
exon number 22
gene id brip1
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18200796 ~ 18243226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTCGTGACGACTATGTTTTTATCCAATCTGATTGGTTTGTGGGACTTGCTTACACGGCGGGAACTTCTAGCTAGCTAGTCAGGTATGTTTACAGTTAGCTAACAAGCGGTGTATATCAAATTTGTAGCTACAAAGaTAGTATATCAGTTGGACAAGGCAGTCACCATGGCTGCTCCCCCAGTGGAGTACACCATAGGAGGGGTGAAGATACAGTTCCCTTGCAAAGCCTACCCCTCGCAGCTGGCCATGATGAACTCTATAGTGCGAGGGCTGAATCATGGACAGCACTGTCTATTGGAGAGCCCTACAGGGAGTGGCAAGAGCCtagccctgctctgctctgccctggcCTGGCAGCAGGCACAATATGGTAAGCTTGAACAGGACGGTAGCAGTCCTACAGAGGGTAAGAAGCCAGCTGTCACCACCCCCTGTCAGTGTGCCTGTCATAGCAAACCCGCCAGTGTCCCAGACAACAGGCCCAAAGCACTAGCCACTGTGGTGGTGGACCTCACAGGCTCACCGGAGGTAGTGATGGCACAGAGATCATCTTCTCCCACAGACCCAGTCTGTTCAGTGCCCCCTCCACCAGAGGAGTACAAGCCCAAGTCTCTAGCCTCTCATCTGTCTGACAAGCTccagacctccctcacctccgaGGATGATGACTTCCAGCCTGATAGGAAACGCATCCGCACCCCTGCCATGGAGCAGAagGGTCGTAAGAGGAGGTGCTTGGAGCCGGGAGTGGTGTTTATAGATGATGAGCCAGAAGGAGAGCGGCCAGTGCCTGGAGCACAGACCTGGACTGTGGAGCTGAGTACCCAGGCACAGACTATAGACCTGCCACTTGATAGAAACTGCTGTTCCCCCATGGTGTCCTGCTCTCTCTGCCCCTGTGCCTCATCCAAAGGCGGCCAGAATGGAGCCGTGGGGGAGTCTTCAAAGGAGAAGGACAAAGAGGGCAAGAAGAAACAAGTCCCCAAGATCTTCTTTGGCACGCGCACCCACAAACAGATCACTCAGGTCGCCCACGAGATGAAGCGTACGCTCTACTCTTCCGCCCCCATGACCATTCTGTCCAGTAGGGACCACACCTGTGTTCACCCAGAGGTGGTGCCTCATTCCAACCGCAACGAACGCTGCAAGGAACTCCTGGAAGCCAAGAAtGGCGTGTCGTGCCGCTTCAAAAACGGCGTGCACAAGATGCAGGACCAGAACACTTTGCAGTGGGTCCATGGTCTCCACCAGGCCTGGGACATAGAGGACCTGGTTCGACTGGGGGGCCGGCTGAGGGCATGCTCctactacgctgccagggacctCATGCAGGAAGCCTGTATCGTCTTCTGTCCCTACAACTACCTACTGGACCCCCTCATCAGGGAGAGCATGCAGATCAACCTGAAGGGTCAGATTCTGGTTCTGGATGAGGCCCACAACATAGAGGACTGTGCCAGGGAGAGTGCCAGCTACACCCTGAACAAACCCCAGCTGCTCTCTGCCAGGGAGGAGCTGGACGGCATGGTGACCCATAACATCAGACGCTCCAACCACGAACCCCTACGTGCCTTCTGCTGCTCCCTGCTCAACTGGATGCAGGAGAGCTGCAGTGTTCTGGCTGAAAGGGAGTATGAGATGTCTTGTAAGGTGTGGAACGGCAAGGAGGTTCTGGGACTCTTCCACACCATGGGCATCACTGCTGACACTTTTGCCATGCTGCAGAAACACCTGGCAGCGGTGTTGGAGAAGGAGGAGCGGGTTGGGCTGGTGAACGGGAGAGAGGACACCGTGGAGGTCCCCACCATCAGCTCAGCCAGCTCCTCTGTCCTCAAGAGTCTCTTCATGGTGCTGGACTTCCTCTACAGAGACAAGAGCAGGTTTGCAGAGGACTACCGCGTGGCGCTGCAGCAGTCCTACACCTGGACCACTGCTCCAGATGTGCCAGATGCTCAGGGCTTCTTCGCCAGGCCCAACCGCCGACGCCACAGTGCCAAGACCAAGACCCTCGTACACACACTCAGCTTCTGGTGCCTCAACCCTGCTGTGGCGTTCTCAGACCTTTCGGACAGTGTTCACAGCATCGTGTTGACCTCAGGCACATTGTCTCCTATGGGATCCTTCTCCTCAGAACTGGGGGTCAAGTTCTCTATCCAGCTAGAGGCCAGCCACGTCATCAGCAAGTCACAGGTGTGGGTGGGTACGCTGGGCTCTGGCCCCCAGGGGAGGAAGCTGTGTGCCACCTTCCAGCATGCTGAGACCTATGCCTTCCAGGATGAGGTGGGAGCCCTGCTGCTCAGGGTCTGCCAGGCTGTTGGAAGGGGAGTGCTCTGCTTTTTGCCCTCCTACAAGATGCTGGACAAGCTGCGTGACCGCTGGACCAACACAGGGCTGTGGGAGaagctggaggagaggaagactgtGATCACAGAGcccagaggaggagggaagggagactTTGATGAGCTGCTGCAGGTGTACTATGATGCCATCAGAATCAGTGGAGAGTTTGCAGGGGACAGAGATGGAGCTCTGCTGATGGCAGTATGTAGAGGGAAGGTGAGTGAAGGACTGGACTTCACAGACGACAACGCCAGAGCAGTGGTCACCATCGGCATCCCCTTCCCCAACATCAAGGACCTGCAGGTGGAGCTGAAGATGAAGTATAATGACCAGCACTGTAAAGCCAGGGGTCTGCTGTCAGGCTCCCGCTGGTATGAGATCCAGGCCTACAGAGCCCTCAACCAGGCCCTGGGCAGGTGTATCAGACACAAGAATGACTGGGGAGCCCTCATTCTGGTAGACGACAGGTTTGGGAACAACCCCAACAAATACATCTCAGGTCTGTCCAAGTGGGTGCGTAACCTGGTCAGGCACCACGACACCTTCAGAGGTGCCATGCAGTCGCTGGTGGCCTTCTCCCAGTGCCAACAGGGGGCAGGAGAGATCCATGGAGCAGGGACCCAGACCTTCAACAGCACCACCGTCCTTTCTCCAGCCAGTCAATCTTCAGTGACTGTGGAAGATCTGTCCCACTGTCGGCCCAGTCCTAGCCCCAGCTCAGACTGCCTTCTCTGGGCCACGGTGCACCACACTACCACGTCTCAGGTCCCAGAGCCCCACACCCAGCTACAGGGGTTGAGGTCCTGGGTTCCCCCTACGGTCTCTGTCCCACCTGCTCTGTGGCCTCTCCCCACCACCAGCACTGGAAAGAGTGGAAACAGAGGTGACCAGAAGCAGACACAGCAacacccctccactcccctcaccACCCCACGGTCCCTGCACCACCTCTTCACCTCCACCCTTGTGAGCTCCACCCACTTCAAGACTCCAATCTTCCAGGCCCAGGACCCAAGCAGGCATCAAGATCATCTGGATGACCCGCCACGGCCTGActctgtggaggaggaggaggagaagaagatccAGGAGAATGTGAGTCAGGATCCCTGGATCCCCTTCCCAGGAGGGATGGCCCGTGAGGGGCTGGATGGACCGGCATCTACCCCTCCCAGCCCGGACCAGGACCAGGGTCCGGTTCTAGTCCTCTCCCCAGTGGAGGTCCCTGCCAGTTGTGAGCCCAGACAGACCACTGTAGTTGTTGACGATCCCACCCTgctagaggaagaggaagaccagagcatcttcttcACACCTGAGATGTTTGATGACGAAGAGGAGGTGGTGGACACCAAGCCTCTTCCCAGGACAGTGCAGGGGATGATGACAGGGGAGGGAACTGTGCTTGCGTCCAGCCTTGCTCTCTCTACCGGAACAGCCCAGGCTCTGTCTGAGGACCTGTTTGGGCCAGAACAGGGTCCCAGGGAGGACACAGAGACAGTCACTACCACTGATACCAAGAGGGGAGGCGCTCTCGCTCCCTCAGCCAGTAGAGACTGTGTCAGTGTGGGATGGGAACAGGACAGGCAGCAGGGGAGTAGGATAGGGAGTGGTGATGAGGCCCAACAGACCCAGAGACAGGAGGACCAAGGTCAGGGAGAAGGACAGGAGCTGAACCAGGGGGCGACCCAAGGCcagagcaggcagacaggcagcaggACACACAGACTGTCCAGGTCCAAACAGAAAGCTCCAGAGCCATCCTCAGGCATCAAGGTGCAGGATAGAGGGGGCAACAGGGCCTCTCGGAGGAGGAAGAGGACTAACAACCACAGACCCTGTTCCAGAGGACTAGACTGTGCTGTGTGCGGGCAGCAGCTACTGCCTGTGGCAGAGGGTACATTTAATTCCCACAAATAAACACATATCCTTATGTCTGATCCTCAATCAAATCAAAAGTGGATGTTGTAACTTGTGACCGTGTTCCTTAAGTGAGCTGCAGAGCACTGTGTGTTATCTGGAGCAGATAGCTAGGCTTAAAGGCACc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2354629 lncRNA upstream 114001 18086628 ~ 18086830 (+) True G2058835
TU2354592 lncRNA upstream 165167 18035432 ~ 18035664 (+) True G2058800
TU2354585 lncRNA upstream 176526 18023248 ~ 18024305 (+) True G2058793
TU2354582 lncRNA upstream 181628 18018968 ~ 18019203 (+) True G2058790
TU2354516 lncRNA upstream 248629 17951260 ~ 17952202 (+) True G2058733
TU2354910 lncRNA downstream 9974 18253200 ~ 18253461 (+) True G2059102
TU2354962 lncRNA downstream 16605 18259831 ~ 18260049 (+) True G2059152
TU2354963 lncRNA downstream 17161 18260387 ~ 18260641 (+) True G2059153
TU2355106 lncRNA downstream 126121 18369347 ~ 18378985 (+) False LOC118944759
TU2355107 lncRNA downstream 126121 18369347 ~ 18378985 (+) True LOC118944759
XM_036965529.1 mRNA upstream 386336 17786275 ~ 17814495 (+) True LOC110507666
XM_036964988.1 mRNA upstream 420440 17670454 ~ 17780391 (+) True LOC110507114
XM_036965621.1 mRNA upstream 716702 17481701 ~ 17484129 (+) False si:dkey-56d12.4
XM_036965589.1 mRNA upstream 822498 17321743 ~ 17378333 (+) False LOC110507111
XM_036965195.1 mRNA upstream 879550 17293324 ~ 17321281 (+) False LOC110507110
XR_005040053.1 mRNA downstream 126037 18369263 ~ 18378514 (+) False LOC118944759
XM_021587823.2 mRNA downstream 503969 18747195 ~ 18770034 (+) True LOC110507678
XM_021587824.2 mRNA downstream 527600 18770826 ~ 18789238 (+) False LOC110507679
XM_021587825.2 mRNA downstream 527601 18770827 ~ 18789238 (+) True LOC110507679
XM_036965816.1 mRNA downstream 546326 18789552 ~ 18796852 (+) False LOC110507680
TU2353626 other upstream 324999 17873801 ~ 17875832 (+) True G2057945
TU2353474 other upstream 614907 17583970 ~ 17585924 (+) True G2057804
TU2353439 other upstream 634447 17555504 ~ 17566384 (+) False G2057788
TU2355275 other downstream 327873 18571099 ~ 18594842 (+) False G2059435
TU2355276 other downstream 327873 18571099 ~ 18592997 (+) True G2059435
TU2355582 other downstream 848721 19091947 ~ 19092272 (+) True G2059714
TU2355651 other downstream 950231 19193457 ~ 19195184 (+) True G2059777
TU2357227 other downstream 1815017 20058243 ~ 20059968 (+) True LOC110507725

Expression Profile