RNA id: XR_005040053.1


Basic Information

Item Value
RNA id XR_005040053.1
length 1734
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC118944759
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18369263 ~ 18378985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAGCCAAACACCGGGTCAGCCCTCAATTCTTGGCCGGTGGAGGCATCACCTCGTTCGGCTTGCGCTTTATACTTTCGACGAGGTGCATAACTCCAGCCCAGAAACAATACCCGAATAGATAGCCTACGTTTATTGCTCTTTAGTCGCTTTCATTATAGTCTAGAGGTAGGCTAAATCAAGTTAGTAGGCTATACCGGTGATTGATTTTTTAAAGTATGAATTTAGCTCAGGAAAACGAAGATTTCAAATAGATTCGTTGTGGTTCCATTTCATGTGAAGATTATGTTGTCAGTTTAGGTCAATTTATCTCATAGCCATTATATCTGGTTTCGTTTGTTTAGAAATCCGCGTGCAGTTATAGCTGTTGAAGTGTTGATCGTGGTTTGGCCAAAATAGCATACAGTTAGTTCCCTCACTGGTTGTGCTTAATGATATACTTACACAGACAATGCTGAGACGGAAAGAGAGTCCACAGCCACCCGTACCTGAATGGTGGGCTATCGGACTCGATTTAGTGATTATATTTCAGGGCTGTCCATTTCCGTGACTCGCTGCTGTTTTGTGAACGATTCACAGCAAGGACAGCGACTAATAAACCGGACATTGCCACTTTAAAAACTGCCCCGGGCCATTTGAAAAGCGCAGAGACAGATGCTGCGTCGAGGCAAGAAGAAAAGAAAACAAATGAATTTGTTCATTTGGGCAACATCGACAGATATATAACGCGCataaactgcaacattttcagcATAAACTGAAACATAAACTGAAATATGTCTATCCTCTGAGCGTGAGGACACAACAGCGTCCTGACTCGCCTGAACAGTTTGTTGGTTGaaaacacacaatactccatgcaGCTCCGGGAATGTTCCTGCCTGCAGCCGGCCCTCTCCTCCCCGGCTTCCCAAACTTTGATCAGCGAGGCCTAGCCGCGGAGCCGCTTGAGCCGTGCAGCATGGTTTGCTGGCAGAGGAGGATGGGTATAAATGGAGACTGTCACAGGAGAGGAGGGTAAAAACCAGGGGCATGTTCAGGAGGCAACCTTTTGAAACAGAGTGAAACAGCTAAGGTGTGCCCTCCTTTAACAGGCCCCTGCCCCTGGTAGAGGTGCAAGCTGGGGCACTGGCCTGGGCATGGTTCCCTCAGACTCAGAGAGACATTGGCATGCAGGGCATCATGTCACAGTGTGGGGCACCAGGGGAGCGTCAGTGGGcaaaccatagaaatataatgaatagaacaggcgtccccattcaagtcaattatgcccacagtggaggtgtcataatacccataaaacccagtGGTCagacagggaaatggttccaatcgttttatCCATCAttaatttttcccataggggaatTTAGAAATACTTCAAATTAGGGCTGTGTTtcttgtaggcttaccctggtgtgatgttatgataaccatgtaaatctctctcggacaaggtgacttatcaatatatttggctctatttactctcagattcaaaaatgctaattagcttcAAAGTAGACATCACACAAAACTACAAATctctgcaagctcctgcacgtcatcacTAGCTGACACCTCTGCTatcaggtattgtgtcaatttaaaactgcCAAAAGGGCAGTgctgaggcgtcactacagcctcgggttcgatcccagccggctgtgaccgggagacacatgaggcggcgcacaattggcccaagttagggaagggtttggccggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2354963 lncRNA upstream 108622 18260387 ~ 18260641 (+) True G2059153
TU2354962 lncRNA upstream 109214 18259831 ~ 18260049 (+) True G2059152
TU2354910 lncRNA upstream 115802 18253200 ~ 18253461 (+) True G2059102
TU2354629 lncRNA upstream 282433 18086628 ~ 18086830 (+) True G2058835
TU2354592 lncRNA upstream 333599 18035432 ~ 18035664 (+) True G2058800
TU2355109 lncRNA downstream 549 18379063 ~ 18379710 (+) True G2059292
TU2355202 lncRNA downstream 129705 18508219 ~ 18509929 (+) True G2059380
TU2355230 lncRNA downstream 153981 18532495 ~ 18600174 (+) True G2059402
TU2355244 lncRNA downstream 171251 18549765 ~ 18551608 (+) False G2059416
TU2355247 lncRNA downstream 171251 18549765 ~ 18551608 (+) False G2059416
XM_036965144.1 mRNA upstream 126037 18200831 ~ 18243226 (+) False brip1
XM_036965141.1 mRNA upstream 126132 18200796 ~ 18243131 (+) False brip1
XM_036965139.1 mRNA upstream 126132 18200831 ~ 18243131 (+) False brip1
XM_036965143.1 mRNA upstream 126132 18200831 ~ 18243131 (+) False brip1
XM_036965142.1 mRNA upstream 126132 18200980 ~ 18243131 (+) True brip1
XM_021587823.2 mRNA downstream 368681 18747195 ~ 18770034 (+) True LOC110507678
XM_021587824.2 mRNA downstream 392312 18770826 ~ 18789238 (+) False LOC110507679
XM_021587825.2 mRNA downstream 392313 18770827 ~ 18789238 (+) True LOC110507679
XM_036965816.1 mRNA downstream 411038 18789552 ~ 18796852 (+) False LOC110507680
XM_036965817.1 mRNA downstream 411038 18789552 ~ 18796852 (+) True LOC110507680
TU2353626 other upstream 493431 17873801 ~ 17875832 (+) True G2057945
TU2353474 other upstream 783339 17583970 ~ 17585924 (+) True G2057804
TU2353439 other upstream 802879 17555504 ~ 17566384 (+) False G2057788
TU2355275 other downstream 192585 18571099 ~ 18594842 (+) False G2059435
TU2355276 other downstream 192585 18571099 ~ 18592997 (+) True G2059435
TU2355582 other downstream 713433 19091947 ~ 19092272 (+) True G2059714
TU2355651 other downstream 814943 19193457 ~ 19195184 (+) True G2059777
TU2357227 other downstream 1679729 20058243 ~ 20059968 (+) True LOC110507725

Expression Profile