RNA id: XM_021587823.2


Basic Information

Item Value
RNA id XM_021587823.2
length 7963
RNA type mRNA
GC content 0.54
exon number 43
gene id LOC110507678
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18747195 ~ 18770034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTGGTCGAAATCCATCAAACAGCGTACTGTACGTTCGTGAATTCAAGCGAATTGCGCGCAACGTGCGGTGTCGTTCACACTGCATGCTTTGGACAGGAGGAAGGCTAATCAATACAATCGTGAAAAGCGGGGAAAAGTTCATTGAATTTTTACAGAGAGATGTTGTTATAATCGTGTGCAAACCAAGGCAATTTTCATTACAAAGCAGTTATCCTGGACGTGGAGCAGGAGTTGTGAGTCGCCATGGCAGCTGCCTTCCCATATAGAGGGGTACCAGGTGGAATGCCCCCAGGTATCCATCCCCCAGCCCAGGTTCCAGACTACATGTCTGAGGAAAAACTGCAAGAGAAAGCCAGAAAATGGCAGCAGTTGCAGGCAAAGCGCTACTCTGAGAAGAGGAAGTTTGGGTTTGTTGACGCCCAGAAGGAGGACATGCCACCTGAGCACGTCCGTAAGATCATCAGGGACCACGGTGACATGACCAACAGGAAATTCCGTCACGACAAGAGGGTATACCTGGGAGCTCTGAAGTACATGCCCCACGCGGTGCTGAAGCTACTGGAGAACATGCCCATGCCCTGGGAGCAGATCAGAGACGTGCCTGTCCTATACCACATCACTGGAGCCATCTCCTTCGTCAACGAGATCCCCTGGGTCATAGAGCCTGTCTACATCGCCCAGTGGGGCGCCATGTGGATCATGATGCGTCGTGAGAAGAGGGACCGTCGTCACTTCAAGCGTATGCGCTTCCCTCCTTTTGACGATGAGGAACCTCCCCTGGACTACGCTGATAACATCCTGGATGTGGAGCCACTGGAGGCCATCCAGATGGAGCTGGATGCAGAAGAGGACTCCTCCGTGGCTGAGTGGCTCTACGAACACCAGCCCCTCAAGGACGCCAACAAGTATGTGAACGGGACCACGTACAGGCGTTGGCAGTTCACCCTGCCCATGATGTCCACGCTGTACCGTCTGGCCAACCAGCTGCTGACTGACCTGGTGGACTACAACTATTTCTACCTGTTTGACCTGAAGGCCTTCTTCACCTCCAAGGCCCTCAACATGGCCATCCCCGGGGGACCTAAGTTTGAACCCCTAGTTAGGGACATCAACCTCCAAGATGAAGACTGGAACGAGTTCAACGACATCAACAAGATCATCATCAGACAGCCAATCAGGACGGAGTACAAGATTGCCTTCCCATACCTGTACAACAACCTTCCCCACCACGTTCACCTCACCTGGTACCACACTCCCAATGTGGTGTTCATCAAGACTGAGGATCCTGATTTGCCAGCGTTTTACTTTGACCCCCTGATCAACCCCATCTCCCACAGACACTCAGTCAAGAGTCAGGAGCCTCTGCCAGAGGATGACGAAGAGTTTGAGCTTCCAGAGTACGTGGAGCCCTTCCTGAAGGAGACACCCctctacacagacaacacagccAATGGAATCGCTCTGCTCTGGGCACCACGCCCCTTCAACTTGCGCTCTGGGAGGACCAGGCGGGCCATCGACATCCCACTCATCAAGAACTGGTATCGTGAGCATTGCCCAGCCGGCCAGCCAGTGAAGGTGCGGGTGTCTTACCAGAAACTGCTCAAGTACTATGTACTCAACGCTCTCAAACACAGACCACCCAAGGCCCAGAAGAAGAGGTACTTGTTTCGTTCCTTTAAAGCCACCAAGTTCTTCCAGTCAACTAAGCTGGACTGGGTGGAGGTGGGCCTGCAGGTGTGCAGACAGGGATACAACATGCTGAACCTGCTCATCCACCGCAAGAACCTCAACTACCTGCACCTGGATTACAACTTCAACCTCAAGCCTGTCAAGACCCTCACCACGAAGGAACGTAAGAAGTCCAGGTTCGGGAATGCCTTCCATCTGTGCAGAGAGGTGCTGCGTCTCAGCAAGCTGGTGGTGGACAGCCACGTGCAGTACAGACTGGGCAACGTGGATGCTTTCCAGTTGGCAGACGGGCTGCAGTACATCTTTGCCCACGTGGGCCAGCTGACTGGCATGTACCGCTACAAGTACAAGCTGATGAGACAAATCCGGATGTGCAAGGACCTCAAGCACCTCATCTACTACCGCTTCAACACTGGTCCAGTGGGTAAGGGTCCAGGCTGTGGGTTCTGGGCACCAGGATGGAGAGTGTGGCTGTTCTTTATGAGGGGCATCACCCCTCTGCTGGAGAGATGGCTGGGCAACCTGCTGGCCAGGCAGTTTGAAGGTCGTCACTCCAAGGGCGTGGCGAAGACTGTGACGAAGCAGCGTGTGGAGTCCCACTTTGACCTGGAGCTGCGTGCGGCCGTGATGCACGACATCCTGGACATGATGCCTGAGGGCATCAAGCAGAACAAGGCCAGAACCATCCTGCAGCACCTCTCTGAGTCCTGGCGCTGCTGGAAGGCCAACATCCCCTGGAAGGTCCCAGGCCTGCCCACACCCATCGAGAACATGATCCTACGCTACGTGAAGGCCAAAGCTGATTGGTGGACCAACACAGCCCACTACAACCGCGAGCGAATTAGGCGCGGCGCAACCGTGGACAAGACTGTGTGCAAGAAGAACCTGGGCAGACTGACCCGTCTGTACCTGAAGGCTgagcaggagaggcagcacaACTACCTGAAGGATGGTCCATACATCACAGCAGAGGAGGCTGTGGCCATCTACACCACAACAGTCCACTGGCTGGAGAGCAGACGCTTCTCCCCCATCCCCTTCCCCCCACTGTCCTACAAACACGACACCAAACTGCTCATCCTGGCTCTGGAGAGGCTCAAAGAggcctacagTGTGAAGTCCAGGCTGAACCAGTCTCAGAGAGAGGAGTTGGGGCTGATAGAGCAGGCCTATGACAACCCTCACGAGGCCCTGTCCAGAATCAAACGGCACCTGCTCACACAGAGAGCCTTCAAAGAGgtTGGCATAGAGTTCATGGACCTGTACAGTCACCTGGTGCCTGTGTATGATGTGGAGCCCCTGGAGAAGATCACGGATGCCTACCTGGACCAGTACCTGTGGTATGAGGCTGACAAACGACGTCTCTTCCCCCCCTGGATCAAACCAGCTGACACAGAGCCTCCTCCACTCCTCGTCTACAAGTGGTGCCAAGGCATCAACAACCTGCAGGATGTGTGGGAGACGATGGAGGGAGAGTGTAACGTGATGCTGGAGTCTCGCTATGAAAAGATGTATGAGAAAATAGATCTGACGCTGCTCAACAGACTGCTGCGTCTCATCGTGGACCACAACATCGCTGACTACATGACTGCCAAGAACAATGTGGTCATCAACTACAAGGACATGAACCACACCAACTCGTACGGTATCATCCGTGGTCTGCAGTTTGCCTCGTTCATCGTGCAGTACTACGGCCTGGTCATGGACCTGTTGGTGCTGGGCCTCCACCGGGCCAGTGAGATGGCTGGACCCCCTCAGATGCCCAACGACTTCCTGTCCTTCCAGGATACAGCCACAGAGAGTGCCCACCCCATCCGCCTCTACTGCAGATACATCGACCGCATACATATCTTCTTCAGGTTCTCAGCTGATGAGGCCAGGGACCTTATCCAGAGGTACCTAACGGAGCACCCTGACCCCAACAATGAGAACATTGTGGGCTACAACAACAAGAAGTGCTGGCCCAGAGACGCCAGGATGAGACTGATGAAGCACGACGTCAACCTGGGTCGTGCTGTGTTCTGGGACATTAAGAACCGCCTGCCTCGCTCTGTGACCACGGTGCAATGGGAGAACAGCTTTGTGTCAGTCTACAGCAAAGACAACCCTAACCTGCTCTTCAACATGTGTGGCTTCGAGTGCCGCATCCTGCCCAAGTGTCGCACCAGCTACGAGGAGTTCACCCACAAGGACGGAGTCTGGAACCTGCAGAACGAGgtgaccaAAGAGCGTACTGCCCAGTGTTTCCTGCGTGTGGATGATGAGTCCATGCAGCGGTTCCACAACAGAGTCAGACAGATCCTCATGGCCTCAGGATCCACCACCTTTACCAAGATTGTCAACAAGTGGAACACGGCTCTGATAGGGCTGATGACGTACTTCCGTGAGGCGGTGGTCAACACCCAGGAGCTGCTGGACCTGCTGGTGAAATGTGAGAACAAGATCCAGACACGTATCAAGATCGGTCTCAACTCCAAGATGCCCAGTCGCTTCCCCCCTGTAGTCTTCTACACCCCCAAGGAGCTGGGAGGGCTGGGCATGCTGTCCATGGGACACGTCCTCATCCCACAGTCGGATCTGAGGTGGTCAAAACAGACTGACGTTGGCATCACCCATTTCCGGTCCGGTATGAGCCACGAGGAGGACCAGCTGATTCCTAACCTGTACCGCTACATCCAGCCCTGGGAGAGTGAGTTCATCGACTCCCAGAGAGTTTGGGCAGAGTACGCCCTGAAGAGACAGGAGGCTATCGCACAGAACAGGCGTCTGACCCTGGAGGACTTAGAGGACTCTTGGGACAGAGGTATCCCCCGTATCAACACCCTGTTCCAGAAGGACAGACACACGCTGGCCTACGACAAGGGCTGGAGGGTCCGCACTGACTTCAAACAGTACCAGGTGCTGAAGCAGAACCCGTTCTGGTGGACCCACCAGCGTCACGACGGGAAGTTGTGGAACCTCAACAACTACAGGACAGACATGATCCAGGCTCTGGGAGGGGTGGAGGGCATCCTGGAACACACACTCTTCAAAGGGACTTACTTCCCCACCTGGGAGGGTCTCTTCTGGGAGAAAGCCAGTGGCTTTGAGGAGTCCATGAAGTGGAAGAAGCTGACCAACGCCCAGAGATCTGGTCTGAACCAGATCCCCAACCGTCGCTTCACCCTCTGGTGGTCCCCCACCATCAACAGGGCCAACGTGTACGTGGGTTTCCAGGTGCAGCTGGATCTGACCGGGATCTTCATGCACGGAAAGATCCCCACCCTGAAAATCTCCCTCATCCAGATCTTCAGGGCTCACTTGTGGCAGAAGATCCACGAGAGCGTCGTCATGGATCTCTGTCAGGTGTTTGACCAGGAGCTGGATGCCCTGGAGATCGAGACAGTGCAGAAAGAGACCATTCACCCCAGGAAGTCCTACAAGATGAACTCTTCCTGCGCCGACATACTACTCTTCGCCTCCTACAAGTGGAACGTCTCACGCCCCTCCCTGCTCGCTGACTCAAAggATGTGATGGACAGCACCACCACCCAGAAGTACTGGATCGACATACAGCTTCGCTGGGGAGACTATGACTCTCACGACATCGAGCGCTACGCCAGAGCCAAGTTCCTGGACTACACCACAGACAACATGAGCATCTACCCCTCCCCCACCGGGGTGCTCATCGCCATCGACCTTGCCTACAACCTCCACAGtGGGTACGGTAACTGGTTCCCGGGAGGCAAGCCCCTGATCCAGCAGGCCATGGCTAAGATCATGAAGGCCAACCCTGCTCTGTACGTCCTGAGGGAGCGCATCCGTAAGGGTCTGCAGCTCTACTCCTCAGAGCCCACTGAGCCCTACCTGTCCTCCCAGAACTACGGCGAGCTCTTCTCCAATCAGATCATTTGGTTTGTGGACGACACTAACGTATACCGTGTCACCATCCACAAGACGTTTGAGGGTAACTTGACCACCAAGCCCATCAACGGAGCAATCTTCATCTTCAACCCCAGGACAGGCCAGCTCTTCCTCAAGATCATCCACACCTCTGTGTGGGCCGGACAGAAACGTCTGGGACAGCTGGCGAAGTGGAAGACAGCTGAGGAGGTGGCTGCTCTGATTCGTTCCCTTCCTGTGGAGGAGCAGCCCAAACAGATCATTGTCACCAGGAAGGGCATGTTGGACCCCCTCGAGGTCCACTTGCTGGACTTCCCCAACATTGTGATCAAGGGCTCTGAGCTGCAGCTGCCcttccaggcctgtctgaaggtGGAGAAGTTTGGAGACCTAATCCTGAAGGCCACCGAGCCTCAGATGGTCCTGTTCAACCTGTATGACGACTGGCTCAAGACCatctcctcctacaccGCGTTCTCCCGTCTCATCCTGATCCTGAGGGCGCTCCATGTGAACAACGACTGTGCCAAGGTGATCCTGAAGCCCGATAAGACCACCATCACAGAGCCTCACCACATCTGGCCCACGCTGACCGATGAGGAGTGGATCAAGGTGGAGGTGCAGCTCAAAGACCTCATCCTGGCCGACTATGGAAAGAAGAACAACGTGAACGTGGCATCTCTGACCCAGTCTGAGATCCGTGACATCATCCTGGGCATGGAGATCTCTGCTCCGTCCCAGCAGCGCCAGCAGATTGCTGAGATTGAGAAGCAGACCAAGGAGCAGTCCCAGCTCACTGCCACGCAGACACGCACAGTCAACAAACACGGAGACGAGATCATCACCTCAACAACCTCCAACTATGAGACACAGACCTTCTCCTCCAAGACAGAATGGAGAGTCAGGGCCATCTCTGCTGCCAACCTGCACCTGAGGACCAACCACATCTACGTGTCGTCTGATGACATCAAGGAGACGGGCTACACCTACATCCTGCCCAAGAACGTCCTCAAGAAGTTCATCTGCATCTCAGACCTGCGAGCCCAGATTGCAGGTTACCTGTACGGCACCAGTCCCCCTGACAACCCCCAGGTGAAGGAGATCAGGTGTATTGTCATGGTACCCCAGTGGGGAACGCATCAGACCGTCCACCTACCCAATCAGCTGCCAGGACACGAGTACCTCAAGGAGATGGAGCCCCTGGGTTGGATCCACACCCAGCCCAATGAGTCTCCCCAACTCTCCCCCCAGGACGTCACCAGCCACGCCAAGATCATGGCTGACAACCCCGCCTGGGATGGAGAGAAGACCATCATCATCACCTGCAGTTTCACTCCCGGCTCCTGCACTCTGACGGCCTACAAGCTGACTCCCAGTGGGTACGAGTGGGGCAGACAGAACACAGACAAGGGCAACAACCCCAAGGGCTACCTGCCCTCCCACTATGAGAGGGTTCAGATGCTTCTGTCTGATCGCTTCCTGGGCTTCTTCATGGTGCCTGGACAGGTCTCCTGGAACTACAACTTCATGGgTGTTCGCCACGACCCCAACATGAAGTATGACCTGCAGCTGTCCAACCCCAAGGAGTTCTACCACGAGGTCCATCGGCCCTCTCACTTCCTCAACTTTGCCTCCCTGCAGGAGGGAGAGATCTACAACGCAGACAGAGAGGACATGTATGGTTGAGACTGGCGCTCCGCTCAGAGATGAGAGGATTACCTCTCTATTGTACATTTTCTATGATATGGACATCCTTATGCGGCCTGTCTAGTACAGTCAGACGTATCATTTGACCCAGCCAGCCATGAAGTTATGAATATAACTACTGCTCCATGAAGAAAGGAAATGAGGTACAGCACAGTAATGGCAAACTCACGAGTGTGTGATCTCCATAGCTGTGATGGACTGAGTGTACCAACTGATAGGGATGGCCTGAAGATATTGGGGAATTTGTATGTAAGCCTAGTACCACCTTTTTAGGACACAATGTCACATTGTGTATGTTTTCTGCAAAATTATGTTTGTTCCATTTGGTTGCCCTCTCCCCTCTGATCTCTCCAATAAGGCTTCAGCATGTGAATTCTACTGCGTTTCATTTATGGCTTTCCTTTTGACACATTGCTGCCAATGTGTAATGGTATTTGTGTTTGTCTTCAGTCTGTAGTAGTTGATATAGCTGTAAGATTAATTTTTCTGTGGCATTTCTTTAAATGGGTAGTTAACCATATTCATAatgctcttttttttctctcccataGAAACTGAACTGTGACAATGGAATTGATATGTACTGTTTATGCTAGCAGTCTCTTACCCACTTGCTATGTTGTGCATTCATTGTGGACACTTGGTTTGGgttaaaataaagataaacattttATAAGTA

Function

GO: NA

KEGG:

id description
K12856 PRPF8, PRP8; pre-mRNA-processing factor 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2355230 lncRNA upstream 147021 18532495 ~ 18600174 (+) True G2059402
TU2355244 lncRNA upstream 195587 18549765 ~ 18551608 (+) False G2059416
TU2355247 lncRNA upstream 195587 18549765 ~ 18551608 (+) False G2059416
TU2355252 lncRNA upstream 195587 18549765 ~ 18551608 (+) False G2059416
TU2355254 lncRNA upstream 195587 18549765 ~ 18551608 (+) True G2059416
TU2355447 lncRNA downstream 83532 18853566 ~ 18855198 (+) True G2059594
TU2355466 lncRNA downstream 153052 18923086 ~ 18923594 (+) True G2059610
TU2355526 lncRNA downstream 196288 18966322 ~ 18966840 (+) True G2059661
TU2355514 lncRNA downstream 219247 18989281 ~ 18991625 (+) False LOC110507689
TU2355516 lncRNA downstream 219307 18989341 ~ 18991625 (+) True LOC110507689
XR_005040053.1 mRNA upstream 368681 18369263 ~ 18378514 (+) False LOC118944759
XM_036965144.1 mRNA upstream 503969 18200831 ~ 18243226 (+) False brip1
XM_036965141.1 mRNA upstream 504064 18200796 ~ 18243131 (+) False brip1
XM_036965139.1 mRNA upstream 504064 18200831 ~ 18243131 (+) False brip1
XM_036965143.1 mRNA upstream 504064 18200831 ~ 18243131 (+) False brip1
XM_021587824.2 mRNA downstream 792 18770826 ~ 18789238 (+) False LOC110507679
XM_021587825.2 mRNA downstream 793 18770827 ~ 18789238 (+) True LOC110507679
XM_036965816.1 mRNA downstream 19518 18789552 ~ 18796852 (+) False LOC110507680
XM_036965817.1 mRNA downstream 19518 18789552 ~ 18796852 (+) True LOC110507680
XM_036965424.1 mRNA downstream 35136 18805170 ~ 18820231 (+) True sarm1
TU2355275 other upstream 152353 18571099 ~ 18594842 (+) False G2059435
TU2355276 other upstream 154198 18571099 ~ 18592997 (+) True G2059435
TU2353626 other upstream 871363 17873801 ~ 17875832 (+) True G2057945
TU2353474 other upstream 1161271 17583970 ~ 17585924 (+) True G2057804
TU2353439 other upstream 1180811 17555504 ~ 17566384 (+) False G2057788
TU2355582 other downstream 321913 19091947 ~ 19092272 (+) True G2059714
TU2355651 other downstream 423423 19193457 ~ 19195184 (+) True G2059777
TU2357227 other downstream 1288209 20058243 ~ 20059968 (+) True LOC110507725
TU2357309 other downstream 1535348 20305382 ~ 20306608 (+) True G2061226
TU2357640 other downstream 1934895 20704929 ~ 20707420 (+) True LOC110507744

Expression Profile