RNA id: XM_021587824.2


Basic Information

Item Value
RNA id XM_021587824.2
length 3094
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110507679
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18770826 ~ 18789238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTATTTGAATTGGGCCTCATATTATTGTTCTAGACTAGGGTTAGGTAAAATGTGTGACGTATACTCGAATGAGGTTCAAGTTTGAACGGGTTTGTTCTAGTCTCTGACCAAGCATGCAGAGTCAAGTTCGAGCATAGGGTGACGATTTGACGAATGCATTAAGTTTAGATGCAGCAGCATATCGCGCTGTTTATTGCGAGAACACTTTCGATTTAATTGTGTTTCGACTCTTTCACCGGGGAACTGTCATGTCACCGTGAGAACGACGTTCTTTTTATTTCTGGGTTTCGATAGTAAAACTTGTGCACTTGCACACTTGTGCAATAATGGAGAAGGATTTTGATAGAAACGATCAAAAGCAAGACGTCAAGAAGACAGAGGTGTGTTTTGAAAGGACATGTTCAGCACTAACTGTGGACGATGTATACGAAATAGCTAAATTGATTGGCTCGGAAGTGGAAACACTTATTGACGGCTACGGTAAAGAGAGCGCCACAGGACTGGTGCCTAAAATTGTCAAAGTTCTAGAACTTTTGGAGAGCTTCGCATCGCGGAACCATGCTCACAAGTCAAAAGAAGAAGAATTACTTAAAGCGTTCGAAACACTTAATGTACAGACACAGAAGAAGGCGAGAAATGTGAAAGAATGCGAAGAAAGCAAGAGCGAAATACAACGGCAGAAGGtgcaggaggaggtggagaagcagAGGAGGAGGTGCGAGGAGCTGCAGGCCCAGGTATTGCATCTACAGATGGAGAATCAGGAGTTACAGAGCTGCCTGAGGGGCAACCATGTCCAGGAAGACCGTGTCCAACGGCAGGAGCGGGAGGTGATGCTGAAACTGAAGGAGGTGGTTGACAAGCAGAGAGATGAGTTGAGAGCCAAAGTACAGCAGATAGGAAGCGTGTCTAAGGAGGTGGAGGCGCTGCAGGAGCAGTTGGAGCGCTTCATGAAGATGAATGGGGAGCTGAGACACAAGCAGAGCATCGTCACGGCCCAGGTGAAGAATGCTGTGGAGAGGAAGGCTGACATGGAGGCAGAcctcagagagaaacagaaagagatagAACGCCTCACCACCCAGCTGGAAAAGGCCAACACTGCTGCTGGCACGGCCAATCCGTGTAAGACCGAAGTGGACCTGACTGACAAGCTGGTGATAGACCTGAAGGATCCCAACAGACCCTGTTTCACCAAGCAGGAGGTCAGAGAGATGCTGACAGAGAGGAACGAGCTCAAAGCCAACCTGTTCCTGGTGCAGGAGGAACTCTCCTACTACCAGAGGGAGATCCTGAATGATGAGCGGTGTCCAGGCTTCTTGCTGGACGCTGTACGTTCTGCCATAAAGAAACagaaaactgtcatcaaggccaagATGTTGGGCATGCCAGAGGACGAATGCAGCAgTGATGAGGAGAAAGGACCCTTGtttgagaggagagcagagacagaAACCGGGACAGACAGCACTGACAGCAAACCACAAGAGTCTCGCATCAGGAACCTCTTTGGCTTCCTGACCCGCTCCGGCAGCAACCACAGCAGCCGTAGTCCCGGTGAAAACAACGCTGCTTCTTCCTGGGAAATCATCGACGACACTGACAACACTGCGGAGACAGAACCCCGACAATCACCATGACACCCCTCAACACCCGTCCAACTACACTTGTCCTCCATTCTGTTCAGTATCACAGGATGTTGTCATACTGGTTAGGTCTCCACAGCAGCCCTAAGAAAGGAAGAGCATTCTCTCATGCCTTCCTTCTTCATGTGTTATTACCCCCTTGTCCTTGCTCTGTAtacctttctcttcctctctctctttctcttcctctctctctttctcttcctctctctctttctcttcctctctctctttcttttcctctttctcttcctctctctctcttcctctctctctttctatctctttctcttcctctctctctttctctctctttctctttctcttcctctctctctttctctttctctctctttctctccctctgtttctctcaggAATAGGTTCAGAATGGTGAAATGGCCAACTGTACACTTTGCATTGACAGTAACTGTGCAGGACATTATTATGAGGGACTTTTTTTTAATGGATAATGCTTTTGTAATTGTTTTAGTATTTGTATTCAACATTATAGTGATGTGTATGGTATGTAACCATCTACAACAAATCTCTGTTGAATCTCTGAAGCAAATTTGTATTGAGATATTTTAACAAATATTTTTAGCCAAAGATACCAAGATATATTTTGAACACAGCAATCATTAGTCATTGCAGGAACACGTTTGTGCCACAGAGGGAATTCCAACTATTAACAACCATGGTGGACTTCCATGTGTTGAACATTTTACCTAGTGTGGGTGTTTTTGGTGTGCTTTGTGGTTGCTGTAATTCTTACAATCTGTCACTGTCTTGGACATGGTGTGAGTTATAGGAAACGTTTTGCAGTAAAGTATACTGTGTGTTACTTCTGAGCCTGAATGTATTGCCACAGAGTAACAGTCATTTATTGATTCGACTTTATATTCTTAACCATCAGCTCATCTTACATTTTTGATAGAGTCCTGTTATGAGTTCAACCATGTCTTCCCTAAGACCATGAATTGAGCATTGGGGTTGGTTGTTATGCATGTGGCTGCCAAGTGTGCGTGTGCacacctgtctctgtgtgtgtgtgtgtgcgtgcgtgcgtgcgttcgttCACTGGGGCACCAGCCCCTGTAAGTTAGTTGCTGCACTTACAGAGGAAATGTGTGTTTCCTTGGGGGTAAAtgggagatggtgtgtgtgtgccgtcACTATCCTTCCATCTGACCATGTCGTTAAACAaacgcacacagaaacacacacctacAACAATGGCTGCCCCTGCCCACTACCATAACTTATCGGTACTCAGACATCTGACTCGGACGTAGTTTTCTGACATTCTAAATGAATGCTGCTGGTGATTGTGTTGAATGATGTATTTTCCTACAAACTATGTACATGTTATTTTTGTAAGCATGACTATTTTTAAACGGAGAAGCCTCTGAGCTACAAAAACCAAATAAATATCTGAATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2355230 lncRNA upstream 170652 18532495 ~ 18600174 (+) True G2059402
TU2355244 lncRNA upstream 219218 18549765 ~ 18551608 (+) False G2059416
TU2355247 lncRNA upstream 219218 18549765 ~ 18551608 (+) False G2059416
TU2355252 lncRNA upstream 219218 18549765 ~ 18551608 (+) False G2059416
TU2355254 lncRNA upstream 219218 18549765 ~ 18551608 (+) True G2059416
TU2355447 lncRNA downstream 64328 18853566 ~ 18855198 (+) True G2059594
TU2355466 lncRNA downstream 133848 18923086 ~ 18923594 (+) True G2059610
TU2355526 lncRNA downstream 177084 18966322 ~ 18966840 (+) True G2059661
TU2355514 lncRNA downstream 200043 18989281 ~ 18991625 (+) False LOC110507689
TU2355516 lncRNA downstream 200103 18989341 ~ 18991625 (+) True LOC110507689
XM_021587823.2 mRNA upstream 792 18747195 ~ 18770034 (+) True LOC110507678
XR_005040053.1 mRNA upstream 392312 18369263 ~ 18378514 (+) False LOC118944759
XM_036965144.1 mRNA upstream 527600 18200831 ~ 18243226 (+) False brip1
XM_036965143.1 mRNA upstream 527695 18200831 ~ 18243131 (+) False brip1
XM_036965816.1 mRNA downstream 314 18789552 ~ 18796852 (+) False LOC110507680
XM_036965817.1 mRNA downstream 314 18789552 ~ 18796852 (+) True LOC110507680
XM_036965424.1 mRNA downstream 15932 18805170 ~ 18820231 (+) True sarm1
XM_036965681.1 mRNA downstream 48994 18838232 ~ 18849272 (+) False LOC110507684
XM_021587830.2 mRNA downstream 48995 18838233 ~ 18849272 (+) True LOC110507684
TU2355275 other upstream 175984 18571099 ~ 18594842 (+) False G2059435
TU2355276 other upstream 177829 18571099 ~ 18592997 (+) True G2059435
TU2353626 other upstream 894994 17873801 ~ 17875832 (+) True G2057945
TU2353474 other upstream 1184902 17583970 ~ 17585924 (+) True G2057804
TU2353443 other upstream 1204442 17555504 ~ 17566384 (+) False G2057788
TU2355582 other downstream 302709 19091947 ~ 19092272 (+) True G2059714
TU2355651 other downstream 404219 19193457 ~ 19195184 (+) True G2059777
TU2357227 other downstream 1269005 20058243 ~ 20059968 (+) True LOC110507725
TU2357309 other downstream 1516144 20305382 ~ 20306608 (+) True G2061226
TU2357640 other downstream 1915691 20704929 ~ 20707420 (+) True LOC110507744

Expression Profile