RNA id: XM_036965817.1


Basic Information

Item Value
RNA id XM_036965817.1
length 4992
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC110507680
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18789552 ~ 18796852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGACTGCTCAGTCAGGCTGGGCATACAACTACAAGACTAATGACTGAAGAGAGCTGGCTggggagaaagacagatagagacagggagagagaaacataaaGAGAAAGACTGCCTTCCATTGGCCTACAAGACCACAGAGCTGGACTAGGTAAAATAAAGTTAGAACGAGAGAGTggcgggagacagacagaggcagggagcgagagagaaacataaagagaaagagagaagacttAATTTTCCATTGTCCTCTTCTGGACTTGAGAAGAGTGACCGAAAGAGAAGAAAAGGAGAAAGGGATTTTCCTGTGAGTTGGACACGTTCTGAGACCTATTGTAGGCTGGTACCTGGTTGTGGGGTGGACATGGGCCAGTTTCTGACGGGTCTAGGACTACTGCTCTgctgttccctctcctcccctcagagaCTGGCTCCCTCAGGGAGAAACGTCTGCCAGGACCCCAGGAATCCTTCCACTCTTGTCTGTTGCACTGGATGGAGACATCAGAGAGAGGAGTGTACTTTACCTGTGTGTGATGGTGAGCAGGCCTGCCAGCAGGATGAGGTGTGTGTATACCCGGGCGTCTGTCGCTGTCGGCCTGGCTACTATGGAGCCCACTGCAAGACACGCTGCCCTCCAGAGTTCTGGGCCCCGGACTGCCGTGAGCTGTGCAAGTGCCACCCTCACGGGCGCTGTGACCCGATCACGGGCAAGTGTACGTGCCTTTCCAACCGCTGGGGGCCACTCTGCCAGAACACCTGCAAATGTGGCCGTCATGGACACTGCCACCCTGTACACGGCAACTGCACCTGCGACGAGGGCTGGTGGACACCCACCTGTGCCAAACAGTGCCAGTGCTACCCAGGCACCTCCACCTGCGACCCACTGACCGGCAGGTGTCAGTGTGCCCCGGGTTACTGGGGTCAGAAGTGCAGTCTTCGATGTAGCTGCTACACATCATCCTGCCAACAGAAGACGGGGGCGTGTGAGTGCCAGAACGGATGGTGGGGTCCGACGTGTGACCGCCACTGTAACTGTGACCTGGAGCACAGCGAGTGTAATGCCGTCAGCGGGGAGTGTGTATGTCAGCCTGGGTACAAGGGAGCCTTCTGTAACGAGCCGTGTGGACCTGGGGAGTATGGCAGCGGGTGTACACTGAGCTGTGGCCACTGTGAAGGAGGCCAGTCGTGCTCTGTGGTTGATGGTGTCTGTACGGCCTGTGAGCCTGGGTGGAATGGCACACACTGTGACCGGCTGTGCCCGCATGGTTACCATGGAAACTACTGCCAGGAGGCGTGCCCACGCTGCAGGAACGGTGAACCATGTGACCCCAGGACGGGGGCGTGTTCACGATGTGACCCAGGATGGACCgaacccagGTGTGACGAGCCATGCTCTAACAGGACATTCGGGGACGCCTGCCGCTCCCTGTGCAGCCCCTGTTTCCATGGCCACTGTGATCACGTGACAGGAAGTTGTGTCTGTGGGCCTGGGTTCCAGGGACGGAGTTGTAACATCACCTGTCCAGACCAGCTGTATGGCtttaactgttcctctgtctgtgacTGTGGAGAGGGAACCGCCTGTCACCCAGCAACGGGGGCGTGTCCATACAgtgGTCACAGGGCTCTGATCACTGGTTTCCTGGTCCCTCTGCTCTTGGTGCTGCTGGGTCtggtctgctgctgctgctgctgtggagGACCTACTGACGgcaaagacagGGTAGCAGTGGGTGACGGTGGTACCTCTGTCCGTATGAAGCATCATGTGTATAACGTCCTGGCCAACGTGAGCTCTGCTGTACCCTGTATCTCTGTCTGGTCCTCTGGGCTACCCAGAGTCACAGTGTCACACCACGACCCTGAGCTGACGTTCAACCACAGCTTCATAGAGCCTCCCTCCTCAGGCTGGGTGACGGAGGGATCCTTCTTCGACAGTGATGAGGAGACCGGAGAGGTGCTCTACTGTGTCCCCCCCAGAGAAgACATCCCTGCAGTTGCAGGCGGTGAGTTCCAGGAGTTCCAGCACGAGATGAGTTCTAAGTGTAATATGTTCCCCGACCCCTCTGCCTTCAGTATTAGTGCAGAAGACATGTCCCTCCCCTTTGGCATCCCCCGCACCTCCAGCAACGCCAAGTCCAAATGCCCCTCCGTCTCCTTCGCCGAAGGCACCAGTCCCAAGGAGCGCCGAGGCTCTGCCCAAGATTTGACACCCGGGGCCCCCCGCACCAAACACAAGTCCCCCTGGGGGGTCCTGATGCTGTCAGCCCTCCAGGCCCAGGGAGGGAATGCCTCAGAGGGAgaagagacggaggggggggTGGATGGATGTGGAGGTGGGACTGGACCATTGGAAGACCCAGAATCCAGTGGTGAAGCAGGGGACCCCGATGTGGACAGGTGGACAGCTACCCCGACCCGAGCCATGTCTACCCTGCAGGTGCCTGGAGCAGTGGTAGGACGCACCATATCCAACGCTGCTGTTCCCAGAAAGGGAGGGCAAACACCAGGGTCCACATCAGATGGCCAGCAGGCAGAGATGGACAAAGTGACCACAGTGTATGTGACAGTGGGGAAGGCGGGGGTGGGGAGGCCCCTGTCTAAACTAGAGCTCCCCAGCTTGGAGGGCCCGGTACAGGCCATGCTACGCAGGCTAGGCAGCCTCCAGAGACACAAAGACCAGGAGGTGGGAACTAAGCCCAAGGGGAAGAGCCCGGGGACGGAGGGGATCACCAAGCCCCCCAGGAGGAAGCTGGGGACTAGGTCCAGTGTGTGGGAGCAGGGGGCTCCCCCACCCTCAGGGGTGGAGGGTGCTGTAGGGGAAGGCGTATCTATGAGAAAACCCAGTAGGAGGAAACAGCACGCCCACCATAGCTCCCCTGCTGTCATGGGAAACACTGACACTAACACTCAACCCCTACCAGAGGACAGCCCTGCCACCGTTACGCCCACGAGGCCCCTGTCCTCCATTTTGAAAAGCGTGCCAGAGGTCGCTGGGTCAAAGGTTAGGGGTGAAAGGTCAGGGGTAAGGCGAGAGAACGGCGACCCTGGGATGCAGACTGATAGTGGATATCGAACAATCGGGCCAGCTGGATTTGTAACGGACACTGTTAGTCTGAGTGAAGTCATCACAAATGAAGGAGTGGTGGCTGGTGTGGACGATGGACCTAACCTTTATGAGAACGTGATGATTATGCATTCCTAATTTCAGATGCAATAACTGTGGTGCTCTGTCTCTTCTCACAATTGAGTATGTAGTTCGACTACTAATGAATGAGGAATTTGGAAACTAGCCTACTGTACTGAGTTAACAGTCGAGTCTGACATAAACTAGCAATCTTTACAATATTGAGTAAACAATTTTATGAATTACAATATGTATATGATGGTTCTGTacaatatgtactgtatgtatgtatattataCAACAATATGATCATGTTGAAATCACCTTACCAAAAAGTAATTGACACTAACTGCCATGTGTGAAACAACTATGCAAATGAAAACCAAAAAATGCTCCTTGTTTACTTTGATTTGTCTGTCATCACTGGGATAGCATTGCTCTGTGGTGCAGCACCAACCCTTCCCAAACCATCACCTGTCTGTGATATGTATTATTCACTGGAACACTGAGGCTgtgtccctaaccctaaccctaaccctattccttttatagtggccatggtcaaaagtagtgcactattaaggaaacagggtgccatttgggatgcacactgaGTGAAACAAAAGAAGTGATGAAACCTGCCATGCATCTGATGTATTGTGGTGTCTGTCAGCTGCATTCCCAATATTGTAGGGTTGAGAGCATTTTGGTTGTATTGGGATTTACATATAAAAGAAAATAAGCCACCATAGACATATCTGTAGAGACTATATTCATCTCTATGGTGACCACTCCCCTTCTGCTTGTACAGGATTTAAGGAGGGGTTGACAGACAGGGTTAGAATGGACGATTGATGACTTGATCTTCTTTAATCTAATTTctgaatgttttttaaaaatcagCAGTGAGTCAACAAGTCCGGGCCGTGTACGCTGTGGAATTGAGTTGTAATGTAAAAGAATGCGGCGTCTCATTGGAACAGATATCCCCAGGCTACCTGGCATAGTCTACTATCAGGCTAGCATAGTCTGTGTACTATCTGTAGGTTTTGCCAAGCCTGTGTCCTCTTGATCACTGTTAAGCTTGCCTCCCACATAGCATGTCCTTCTATGCAGCCAAAAACAGTTTCATCATATTCCACTGAAAGCGCTAGTCAGGAAATGGAGACCTGGTGGCCCAGAGTTGTGTTTGTTGATGTCTTTGTAGCCTGTCATTCACTAGGTGttagtagtgtttctgtatcACACTGTCAGTCCCACCTTTAAAGACCCCTCTTGTAAACTGGGTCAGAtattagagaggagagataaCCCACATGTAAAATTATTACAGTTTACAATAGAAttcagtagtatactgtagaatactatactagaCACTGTGAAAgcctccacttctatgtcaaagatattAAAACAAAAACACCATAGTAAATACAACAataatgtccgcaaaaacactacagtaaatactaccgtATACTACAATACGCAAAAATACTAcattaattactatagtatatactacagttttCTTTCACTgcagtatttatactatagttaactgtaaatactacagtaattactatagtattcactgtagtgtttttgtggacttcaGATTGCACACCAACCAACCTGCTGAACTTTGCCCCAAATCATGGGGAACAGAGGGGGTGGGGAACAGAGATGGGTGGGCCTTCATTGATCTCCAATAAGGGGAGCTACAGCGCAAATACTACAAGTCCACTTTGACTGAATTGAGGCTTGGATTAATTTCAATACCCCCAATAACACGTGGGTACCCTTTACAGCTAGAAAATGTTTAATTATAAAAGTATTACACGCAAGTATTCCAGG

Function

GO: NA

KEGG:

id description
K24318 SCARF1; scavenger receptor class F member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2355230 lncRNA upstream 189378 18532495 ~ 18600174 (+) True G2059402
TU2355244 lncRNA upstream 237944 18549765 ~ 18551608 (+) False G2059416
TU2355247 lncRNA upstream 237944 18549765 ~ 18551608 (+) False G2059416
TU2355252 lncRNA upstream 237944 18549765 ~ 18551608 (+) False G2059416
TU2355254 lncRNA upstream 237944 18549765 ~ 18551608 (+) True G2059416
TU2355447 lncRNA downstream 56714 18853566 ~ 18855198 (+) True G2059594
TU2355466 lncRNA downstream 126234 18923086 ~ 18923594 (+) True G2059610
TU2355526 lncRNA downstream 169470 18966322 ~ 18966840 (+) True G2059661
TU2355514 lncRNA downstream 192429 18989281 ~ 18991625 (+) False LOC110507689
TU2355516 lncRNA downstream 192489 18989341 ~ 18991625 (+) True LOC110507689
XM_021587824.2 mRNA upstream 314 18770826 ~ 18789238 (+) False LOC110507679
XM_021587825.2 mRNA upstream 314 18770827 ~ 18789238 (+) True LOC110507679
XM_021587823.2 mRNA upstream 19518 18747195 ~ 18770034 (+) True LOC110507678
XR_005040053.1 mRNA upstream 411038 18369263 ~ 18378514 (+) False LOC118944759
XM_036965142.1 mRNA upstream 546421 18200980 ~ 18243131 (+) True brip1
XM_036965424.1 mRNA downstream 8318 18805170 ~ 18820231 (+) True sarm1
XM_036965681.1 mRNA downstream 41380 18838232 ~ 18849272 (+) False LOC110507684
XM_021587830.2 mRNA downstream 41381 18838233 ~ 18849272 (+) True LOC110507684
XM_021587832.2 mRNA downstream 64971 18861823 ~ 18884306 (+) True LOC110507685
XM_021587835.2 mRNA downstream 138689 18935541 ~ 18940039 (+) False LOC110507687
TU2355275 other upstream 194710 18571099 ~ 18594842 (+) False G2059435
TU2355276 other upstream 196555 18571099 ~ 18592997 (+) True G2059435
TU2353626 other upstream 913720 17873801 ~ 17875832 (+) True G2057945
TU2353474 other upstream 1203628 17583970 ~ 17585924 (+) True G2057804
TU2353443 other upstream 1223168 17555504 ~ 17566384 (+) False G2057788
TU2355582 other downstream 295095 19091947 ~ 19092272 (+) True G2059714
TU2355651 other downstream 396605 19193457 ~ 19195184 (+) True G2059777
TU2357227 other downstream 1261391 20058243 ~ 20059968 (+) True LOC110507725
TU2357309 other downstream 1508530 20305382 ~ 20306608 (+) True G2061226
TU2357640 other downstream 1908077 20704929 ~ 20707420 (+) True LOC110507744

Expression Profile