RNA id: TU2355516


Basic Information

Item Value
RNA id TU2355516
length 2265
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110507689
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18956560 ~ 18991625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gTCAATGTGTTTTTGTATAATGTTCAGTGGAAATTGTAATAGTTAGAGTGGATAGAGTTGAaaggtttttgtttgacatacattttaaacatgAGAAATCTTtagtctcagcatcactctgttactGTTGAATTGCTCTACTGCCCATTCCTGTGACTGTTGAGTTGGCTGGTATTGTGCTCTGTGGCTCTGCTTTactggagggaaagggaggaagaggtggagcagGGAGGGCTTGTTGTTGTCCTATAAGATTCCACAGGTCCTATTTGCCTGTCCTCCAGCCCACCAGAGAGAGGTGTTTCAGAGTCTACAACTGTCCTCTATGGCTGGTGTCCAAGATGACTCGTCCAAATCAGCACCTGCTTGGCTCTGTTCATGGATGCACACTAAAGGCCTAGTGGAGCtgggaaaccttttttttttttttttcatgcacgcaacacacacatgcagctaacCACTCATCAACCTGTCCATATGTATTTGATACTTATACTTTGAACTAGTACCAAGGAATAAACTAACTACAGTAATTTGAAATGATTCAAGAAATGGAAGTTTCTCATGGTTTTTGTCAATGTTGTCCCAGTCTAGCTAGCCAATCTTTCAGAGGGAGCATCAAACACAGTGCCTTGGATGCTGTAGAGTTAGACACCCCACTCTCTTGTAGGGCTATAGTACAGAAGCGTGGTGGTGTGGGTACTAGAAGCATAGTAAATATATTATAATCTCTCCAGATTATGGCCTAGTACAGATTATAATCTGTGATCCATCAGATACTCGGGTGGTATGGAAGACCTAATAGTCATCCAGGATTCTTGAGTATTTTAAATGATGCACTCTCAGAGCAGAAGCCTTGCAATGGGCCTGGGTTCACAGGCTGCATGTGTTTTCACTTCTATTGCCCTCTGCTTATTCATGTGCCCTCTTGGACATACAGCACAAGGCCCTCTATGCATTGTACTACAAGCACTGTATGTTAAATACAAATACATGATTCCCCATTTAATTGTTCAGGGAAAGCACTTTGAAATAGATGCAAATACTGTAGATTACAAATGGAtggttttctttaaaaaaaaaaagttttttaaagaatatatatGCTTTTTTTCTTTCTACTCACAGACCAGCTTGTTTAAAATGTTTCATATCTTAAAATGACCTTTTAAGATGGCAAATGACTTACCCATGCTATAATAATCAGCAGCAACATAGATGTATATTTAGTTGTAATTTACTTTTATTTCTCTTTTTGCTGTTAATTTTTTTTCATGCATTCATTCATGATTTATTTGTACATCTGATAGAATTGTATTATATCAAATCCTTATGGTAGATGGCAGCCCTACATTACTGAAAAGGTGCAACATGTCTGCTCTAGAACCATCCAGCAGAGGAGGGCATCTTCCTCtacaacagtggtcaccaaccctggtcaTGAGGAGTATGAGGTGTGCAGACTTGTTCCAGGCCAACACTGACCCTCCCAATTCTACTCTCATCAATGTCTTATTGAGTAACtggttagttgaatcaggtgtgttagtgctgggctggaacaaaacccTGTACACCATGTAGTTATTCAGGACCAGGGAGGAGGACCACCAGTCTACAGGAGTGACTGACTCCTAGCTTACATCTCTGTTGCACATAATCACTATTGTAGCGAAGCCAGCTAATCTTAGGGGAGGGTGAGAAATtaagttatttttgttttactttctgtgtgtgtgtgagagagaaagctgGAGAGCGTGTGTTTTCTGAATGGATGTTGGTGTTTTGATATAAATggttatttttgtttctttttataTGAAACTGAATTGATTGTAGATAATGAACTGTTGCCAAGTGTATTTGAGTGAGAAAAATAAGTGCAATTCAAGTTAACCCTGACAATACAACACACATTTCATAACAAACCAACCTGTTACACCTGTTTGTggtgattatttttattttaaccttttattttactaggcaagtcagttaagaacaaattcttatttacaatggcggccaaCCCCGgccaaacaataacctggacgacgctgggccaattgtgcgctaccctatgggactctcagtcatggccggttgtgatacagcctggaatcgaaccagggtctgtagggaaGCCCTGAGTTGCATTGCCtgaaaccgctgcgccactcgggagccccatatGACAGACCATGTTGACATGAACATTCTTCAAGACACATTGATGAAATAAATACTTTTCTTTCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2355526 lncRNA upstream 22501 18966322 ~ 18966840 (+) True G2059661
TU2355466 lncRNA upstream 65747 18923086 ~ 18923594 (+) True G2059610
TU2355447 lncRNA upstream 134143 18853566 ~ 18855198 (+) True G2059594
TU2355252 lncRNA upstream 437733 18549765 ~ 18551608 (+) False G2059416
TU2355585 lncRNA downstream 102457 19094082 ~ 19094319 (+) True G2059717
TU2355587 lncRNA downstream 104073 19095698 ~ 19095944 (+) True G2059719
TU2355590 lncRNA downstream 106864 19098489 ~ 19099017 (+) True G2059722
TU2355591 lncRNA downstream 113137 19104762 ~ 19104971 (+) True G2059723
TU2355605 lncRNA downstream 139902 19131527 ~ 19131743 (+) True G2059737
XM_021587835.2 mRNA upstream 49302 18935541 ~ 18940039 (+) False LOC110507687
XM_021587836.2 mRNA upstream 49302 18935548 ~ 18940039 (+) True LOC110507687
XM_021587832.2 mRNA upstream 105035 18861823 ~ 18884306 (+) True LOC110507685
XM_036965681.1 mRNA upstream 140069 18838232 ~ 18849272 (+) False LOC110507684
XM_036965413.1 mRNA downstream 649 18992274 ~ 19032007 (+) False LOC110507690
XM_021587842.2 mRNA downstream 652 18992277 ~ 19047785 (+) False LOC110507690
XM_021587843.2 mRNA downstream 664 18992289 ~ 19047779 (+) False LOC110507690
XM_036965414.1 mRNA downstream 766 18992391 ~ 19047785 (+) True LOC110507690
XM_021587854.2 mRNA downstream 357145 19348770 ~ 19383505 (+) True LOC110507699
TU2355275 other upstream 394499 18571099 ~ 18594842 (+) False G2059435
TU2355276 other upstream 396344 18571099 ~ 18592997 (+) True G2059435
TU2353626 other upstream 1113509 17873801 ~ 17875832 (+) True G2057945
TU2353474 other upstream 1403417 17583970 ~ 17585924 (+) True G2057804
TU2353443 other upstream 1422957 17555504 ~ 17566384 (+) False G2057788
TU2355582 other downstream 100322 19091947 ~ 19092272 (+) True G2059714
TU2355651 other downstream 201832 19193457 ~ 19195184 (+) True G2059777
TU2357227 other downstream 1066618 20058243 ~ 20059968 (+) True LOC110507725
TU2357309 other downstream 1313757 20305382 ~ 20306608 (+) True G2061226
TU2357640 other downstream 1713304 20704929 ~ 20707420 (+) True LOC110507744

Expression Profile