RNA id: XM_021587977.2


Basic Information

Item Value
RNA id XM_021587977.2
length 5787
RNA type mRNA
GC content 0.53
exon number 23
gene id LOC110507761
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 21147117 ~ 21193859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGTGAAGAAGAAAAAACTGTGACCCGGAAGATCCGTCACTGCCGACGATTTTTTTTGTCACAGACCACTGTTATCAAGATGGCGTTACGGCCAGGATCTGGGGGAGGTGGCAGTTTTATTTATCCTGTTGGAGGGGGCCTGGGACCGCCACAAGGTATGATGCccatgcagcagcagcagcaacaacagggATTCCCTGGTATGGTTCAAGTCCAAATGCAGCCCAACATGCAAGGAATGATGGGAATGAACTTCGGAGGCCAGATGCCTCCTGGTGCCATGCCTATGCAGGGTGGGATGGCCATGGGAATGCAGGCCCCTGGGATGCAGTTCATGGGCCAGCCACAGTTCATGAGCATGAGGGGCCCCGGGCCCCAGTACACTGCCGACATGCAGAAACAGATGGCCGAGGAACACCAgaAGCGTCTAGAGCAGCAGCAGCGGATgctggaggaggacaggaagaggaggcaGTTTGAGGAGCAGAAACAGAAGCTGAGGCTGCTGAGCAGCGTCAAACCCAAGGGACAGATGGGGGCGAGTCGGGACGACGCGCTGGAGGCCATCAAAGGCAACCTGGACGGGTTCAGCAGAGACGCCAAGATGCACCCCACGCCATCCTCACACCCCAAGAAGCCAGACTCATCGCCATCCCACTCTTCTGtcacctctcactccctcccccctgcTTTCCCCGATGACGAGTTTAGTGACTTCATGCAGGGTCCCTTAGATGCTTCTTcctccttccccccctcctcccaggCCCATTCTTTAGACGCAGGTCCTGGTCAGAGACCCTCCTCTGCCCCCTTCCCCCAGTCCCTCCCTGCCTCTATGTCCATTCTTACTGCCACCCAACACTCTACTGTCAACTCCAGCTCCCCATCTGCATTTCAAGGCCCGTCCCTGGAAGAGAAACTGTTCTCCTCGTGTGATTTAACGGCTGAAAAGAAGGCCCAGGTTAGCTTTAAGTCCCAGAGGACCCTGGCCCCTAACCGAGCTACAGTCTCGGCCCAGTTTCATTCCAGCACCAAGGCCCGGAACTGGGCTGAGGCTCCTGGGGACCTGATTTCTGCTTTCACTATAGAAACACCACAACCAGAGGCACCAGCACTGGGGCCCACAGCCCCCTCACCAGCAGCTGACCCCCCTCCTCCCCAAAccagtagtgatggtgCAGGTGTTGGTGGTTACCCTCAACAAGAGCACATCCAGCCCATGGTTCCAGGCTGGCTCTACAACGACAGCCTCATCCCAGagatgttcaaaaAGGTCCTGCAGTTCACCATGACTCCGGGGGGTATCGACACAGCCAAGCTCTACCCCATCCTGATGTCCTCAGGCCTGCCCAGGGAAGCACTGGGCCAGATCTGGGCCTCAGCCAATCGCACCACGCCTGGCATGCTGACCAAGGAGGAGCTCTACACAGTCCTTGCTCTGATTGGTGTGGCACAGAGTGGTCTTCCAGCCATGAATGTGGAGATCCTGAGCCAGTTCCCCTCTCCCCCGGTGCCCAACCTGCCTGCCCTGGCCATGGCTATGGCCCCTGTCATCCAGCACCAACACCAGCAGCCCATGATGACTCAGCCCCCTGTCCCTGTGTCCATGGCCATGCCTGCACCAACAGTCATGGGCAgggctcctcctgctgctccttTACCCTCCGCCCAACCACCCACCAACTTCATCACCAACTTCCCACATGTACAGGGGAAAGCAGACGATGATGACTTCCAGGACTTCCAGGAGGCCCCCAGGGCAGGAGGAGGGGATCAGCCCTTCACTGAGTTCCAGGGGGAGTCAGGGGAAACCTTCCCCACCACCACATCCTCTCTGCACCagaacagTGCTCCTGCCATTCTGACACCGGTCTCTGGCTCCTCCTCGTCATCCTCTGATAAGTATGCTGTCTTCAAGCAGCTCTCTGTGGAGGAGCCTCCAGAGCCCACTCAGCCTGCCTCAGATTTTGACGGAGACAAATACAGTGTGTTCCGACAGCTAGAGCCACCAGGTGACAGGAAACCAGTAGTTTCTGATGGGGACAGCAGCTCCCACGACTCCAGGGAAGGATTTGCCGATTTCAAGTCTGTCAGTGTGGATGATGGCTTCACAGACTTTAAAACCGCCGACAGCATCTCTCCACTAGAACCTTCAGACCAGGCCAAAATGTTTCAGCCAGCATTCCCTCCTGCTTTCCCGAACTCTCAGTCTCTACCGCAACTACAACACCagctacatcaacaacaacaaccagcagtctctctctctcagcctaaAAACCCTCTCAACATGGCTGACCTGGATCTCTTCTCTATGGCTCCCACAGCCCCCACCCCTGCTGAGATCAAGCCCAGCCCCTTCCCCTCTGTGCCCCCCTCCCTAGTGCTCCCACCAGGCAGGGCCAAGCCACCCGGGGGTGGGGCCGAGGACTTTGGTGACTTTTCCCTTTTTGGCCCCACCTCCTCTTCGGAGGCTGCTCCTATTGGCCCTGATGTAGGAGGGGGTGTGGCAGCGTCTCATGATGACTTTGCAGACTTCATGGCTTTCGGCAGCTCTGGGGGGGAGGCCAAGGGTGAGGGGTTGAGGTCTGGAGAGGGGAGGGcacgggggagaggagagaccaccACCACTCCACAGCGCCCCCAGCAGGGCTCTGACAAGTATGACGTGTTCAAGCAGCTGTCTCAGGAAGGAGGCCTGGCATATGACGACAACAAGCACAGCGCCGGCGGCTCGTTCTCTTCCCTTAGGAGCGAAGCAGATGACTTCACCGACTTCCAGTCATCCAAGTTCTGCACAGCTCTGGGGGCCTCGGAGAAGAGCCTGGTGGATAAGGTGGCAGCCTTCAAACAAGGAGGCAAGGAGGACTCTGCATCAGTCAAGTCCCTAGACCTCCCATCCATCGGGGGCAGCAGCGTGGGCAAGGAGGACTCTGAGGACGCTCTGTCAGTGCAGCTGGACATGAAGCTGTCAGACATGGGTGGAGACCTGAAGCACGTGATGTCAGACAGCTCTCTGGATCTGCCGGGCCTCTCGGCCCACCAACCCCCCGCCACAGAAGGAGACGACATGAAGTTTGACCCCTTCGGAACGTCAGCAGTCAGCAGGCTGGCCAGCTATGATTGGTCAGAAAGAGAGGAATGCCTGTCTGCTCAGGGTCAGGCCAAGAAGCATCTGGTCCTGGACGGTGTTGGTgtttcctcctctttcccttcctcagACGTAGTCCACAGGAAGGAGACGCCGTTCGGCAGCACAgaaaacatccccatcacacacacctgCCAGACGAAGATCACCACCTTCTCAACAGACGATAGTGTGTCGACCGACAGCAAGTTTGAGGCCTTTGCTGACTTTGGATCTTGTGAGCCAGTAGGTTTGGGTGGGGATGAAGATGATGACTTTGGGGACTTTGCCAGCACTGTGTCGGAGAAGTCAGACTCCCCCGCGGCTGAGCCAGGCTCTGAGGTGAACCTGAACGAGGCCTCAGATGAGTTCGGGGCCTTTCATGGGGACAAGGCCAAGTTTGGGAAGTCAGACTTTCTGAAGGCCAGCTCTCAGACCAAGGTCAAGTCCAGTGAAGAGATGATCAAGAGCGAACTCGCCACCTTTGACCTCTCTGTACAAGGCTCCCACAAGCGTAGCCACAGTTTGGGGGAGAAGGAGATTGGGCGCTCGCCCCCCTCCCCGGCCCCGGAGCAGCCCTTCAGAGACCGCTCCAGCACCCTGAGTGAGAAGAAGCCTGCCCTGCCCGTCATCAGAGACAAGTACAAGGACCTGACTGGGGAGGTGGAGGAGAGTGAGCGCTATGCATATGAGTGGCAGAGGTGTCTGGTGAGTGCTCTACAGGTCATCACTAAAGCCAACAACACCCTGAACAGCATCAGCAGCTCTACTGTTTGCACTGAGGTCATCCAGTCTGCTCAGGGCATGGAGTACCTGctggGTGTGGTGGAGGTGTACCGCGTGACCAAGCGTGTGGAGCTGGGTATCAAGGCCACAGCCGTGTGTTCTGAGAAGTTGCAGCAGCTGCTGAAGGACATCAGCCGCGTCTGGAACAACCTCATGGGCTTCATGTCCCTGGCCAACCTGGCGCCTGATGAGAGCTCGCTGGACTTCTCCTCCTGTATCCTGAGACACGGCATCAAGAACGCCAAAGAGCTGGCCTGTGGGGTGTGCCTGCTCAACGTGGACTCACGCAGCAAGGCTTTCAACTCAGAGACAGACAACTTCAAGCTGCTGTACGGGGGCCACCAGTACCACGCCAGCTGTGCCAATTTTTGGATTAACTGCGTGGAGCCCAAACCACCGGGCCTCATTCTGCCCGACCTGCTCTGAGTGCTGGACACCATTGCCATGGCAACGGGCGCCGAGTAATCAACACCGACGAGGTTCAGCAGCCGGGTTCTCCCTGCACACCGCACAGCCTCTCACCTTGGGCTGCGAGCGCAGAgatcagagcgagagagacctcAGAAGTCACTGTAATTCTCTTATTTATTAGCCTTCTATTCTctccttttccttctctctctgaggGAGTCTCCATGCTCTTTGCAGTGGTGAAGAAGTGCAAATCTGCTAGTTTGTACAAATTCAAGGCTTGACACAGTAAAGCCTATTCTGTATCATAATGTATTGTACAATTGTACTTTATTAATGGTGTCATTGCTACTTTTTTCCTTTGTCTGGtctcatatacagtataatgCAATATAAGTTACAGGAAGCCTTTTAGCATTGATGTTTGTGACTTCTTTGGCAGGCTTGATTTATTTCAGCAAACAGTATTCAGATAGTTAACCAATGTTGTGCTATGTTAACCCAATGGAGGTCTAGTCCCTATGTCAGCAGGAGAAAATGTGGACAGTTATATGAATATGATTGTGGGTCTCTCAACACTTTCTGTAATGCACTCTTTCTGTTCTCAACAAGTCCATACCAAACTATTAAAACTGCAATATACTAACATTGAAGACTGAAGGAACTTGGAGACAGACTGAGATATAAAGCGATCTGTTGTTTGCCTTGATGTCACTTGATTACACTGCTGGTACTGAATCACTTTGATGGTCGGGTCTCTAAAAGCATAGTCCATGGCTGTTAACATTTTAATTTATATTTACCATTTTAAGTAAGTGTGACATTGACTGCTTTTTAATGTCTTTGTATTGTTTGATAAGGACTGCTTTATCTAAATTAATGTTCATGTGCTGTTTTGAAAGTTTTTGTGACATTGGGACTTGAAAGGGAGTCTTAACTCTTAAAGATTGTTGGCTGTAGGTTTTGTTTTTCTGTCTTGCTGTGCCAGTGTATATATACTCGCTCTGATGATGGGGATGTGATGATATTTACATAAATAATACATTGATGCATAAATTCAATACTTTTCATGGTCATTGATCAATTAATGTATTACCTGGAAGCCTATTACCATACTAATCAATTTACAGAGTATTACACAATTCGGCCGAATTGTTTTTTGTTACTAATCTTTTCTGATATAATTGAGAAGGTTGGTTTGAATGTCAACATGAATCCTGAAGGCATTCTATTGTCCCAATATCACCAGTCGTTTAATCTGGACCAATTATGTTCAGAGTCTATTGCAGCAATATATAAGCAGTACTTCTAAAATGCCAAATGGATTGAGATTCTCACCTTTTCTATTTCACTCAGTAGCACGCTTTTTCTGAGACCAGAGAGACTTCATCTCTATCACTTTGTGACCAaatgaaatacactgctcaaaaaaataaagggaacactaaaataaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2358700 lncRNA downstream 2936 21143943 ~ 21144181 (-) True G2062478
TU2358681 lncRNA downstream 42218 21101152 ~ 21104899 (-) True G2062461
TU2358675 lncRNA downstream 49232 21097565 ~ 21097885 (-) True G2062455
TU2358548 lncRNA downstream 82248 21064602 ~ 21064869 (-) True G2062360
TU2358532 lncRNA downstream 96749 21050135 ~ 21050368 (-) True G2062344
TU2358716 lncRNA upstream 8539 21202398 ~ 21202757 (-) True G2062494
TU2358749 lncRNA upstream 42925 21236784 ~ 21237050 (-) True G2062513
TU2358900 lncRNA upstream 96134 21289993 ~ 21294151 (-) True LOC118936433
TU2358901 lncRNA upstream 122948 21316807 ~ 21317846 (-) True G2062648
TU2358991 lncRNA upstream 227307 21421166 ~ 21421491 (-) True G2062729
XM_021587966.2 mRNA downstream 222987 20913520 ~ 20924130 (-) False LOC110507754
XM_021587965.2 mRNA downstream 224123 20913520 ~ 20922994 (-) False LOC110507754
XM_036965408.1 mRNA downstream 238945 20900228 ~ 20908172 (-) False rab34a
XM_036965400.1 mRNA downstream 238979 20900228 ~ 20908138 (-) False rab34a
XM_021587987.2 mRNA upstream 10098 21203957 ~ 21228343 (-) False LOC110507762
XM_021587985.2 mRNA upstream 10098 21203957 ~ 21228344 (-) False LOC110507762
XM_021587986.2 mRNA upstream 10098 21203957 ~ 21228344 (-) False LOC110507762
XM_021587988.2 mRNA upstream 10098 21203957 ~ 21228344 (-) False LOC110507762
XM_021587989.2 mRNA upstream 10098 21203957 ~ 21228344 (-) True LOC110507762
TU2358439 other downstream 224742 20914114 ~ 20922375 (-) True LOC110507754
TU2354506 other downstream 3224365 17922342 ~ 17922752 (-) True G2058724
TU2354252 other downstream 3677296 17464521 ~ 17469821 (-) True LOC110507661
TU2353838 other downstream 4147332 16995560 ~ 16999785 (-) True LOC110507646
TU2351551 other downstream 5770602 15376215 ~ 15376515 (-) True G2056115
TU2358911 other upstream 76308 21270167 ~ 21272688 (-) False LOC110507765
TU2358915 other upstream 76308 21270167 ~ 21272801 (-) True LOC110507765
TU2358893 other upstream 103806 21297665 ~ 21304128 (-) True LOC110507126
TU2360564 other upstream 1518804 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other upstream 1518804 22712663 ~ 22717020 (-) False LOC110507789

Expression Profile