RNA id: LOC110507126


Basic Information

Item Value
RNA id LOC110507126
length 4728
RNA type mRNA
GC content 0.51
exon number 25
gene id LOC110507126
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 21295518 ~ 21311437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGTTAGTATGAATTATATTTTATGTGTTGGTTTGTGTTTCTGTTATTCCATTTTCTTCATCCTTTGACTATCTGAATCATCGGATGTGAGGACGAGCAGCTGTCGCTCAGGAGCTTCACCCCTGAGATGAGCTTCCCTCAGAGCAGCCTGGAGCTACTTCTGGAGGATGGGCAGACAGAGAATCCTTTGCCTTAACACCCTCAGGACTGTCTTGCAAGTGACATCAGTGGACATTTCAGGGCCAGTCAAGGTCAACACCTGCATCATCCACTACCGTCACCAGGAGTTCTCCCATTGGCTAGACCTGTTTCCATGGGAACAGCTTATTCATAGGAAAACAGCTCATAGAAAGAGGAACTTCCCCCACCTGGACACCCCAGTGATGATCAGCTCCTCAGTGTCCAATGTCAATGTGTCTGGGCTCCCTTCGCCCTGGGCTTCATCTCAGTCAGCACAGTGGTTTCAGGAAGCCATGGTGCTGGAGCTGTTGAATCAACCCTTTCCAAACATACCCAGCCCTGATAGATTACATTCCTCTATATATGAGATGCAGCACTTCCTGGACATCAGCACAAATGCAGAGAGCCTCAATTTCCAGAATGTTCACCGCCACCTCTCTATGTCCCTGGCAAACACGTGTGGGGGGGAAGCCCTCATCCTCAACTCCCTTACACTGCAGGCATACAAGGGGAGCTTCAACAAGCCCCAGAGTGAGTCCAGTAGCCATTCTGAGAGTGTGAGTGTGGAGTCCAGTGTGAGGGGACTACAGCTGGATGTGTCAGAGACCTGTGCCCTGTGGCTGACCCGCCTACTGTCCCTCTGTAACCTAGACAGCTGCTGGAGGCCTCAGAGCAGTCAGATGTGGTGCCTGTACCTGTCCTTGTTGATGGGACAACCTCCCCCAGTCATGGCGCCTTTTATTTTAAGATTGAGTGTAACCTGGAGGATGTCAACTTGTTCACACTCTCCAATGTAGCAGGAGCTGTGTCTTTGTGGGTGGACACTGTGAAGGCCCAAGACTCGGCAGAAAGCTCCACGGTGtctgtccagggtgtgtgtgtgtctgtggtgaagGCTCTCACAGAGACCATTGAGCCCTCCTGTCCCTCAGCCCAAACCCCCAACCCTATCCTCAGCCTCTCCATCCTGGCCGTCTGCTACCACATCACCACCGGGAACGTGGAGGTAGCTTACAGTTACTCATCCTACCATCAGTCCATCAGGCTTATCAGTCCTATTCCTTCTTCTTGATTGACAGTGTTATTCAGATAAGTTTGCATGGGCAGAACCCGCTTCACAGCCTAGGTAACGGAGCACAACTACCTTCTGCAGCACACAGACGCCCTGTCCCCCTCCACTCACTCCGGCTCCATGAATGTCCGCTCGCCCCACATGTTTCTCAACTTCGACGGCAACAACATATTCTCCTTCAAGGGCTTGGAGGTCCAGACGCACCCTAATCAGGCCATGGACCAACGccacctctttcccttcctctccaccTGACACAACCGTGTCTGGGTGTTCACCTGCCTCTGCCTGGCTGTGGAGTTCCCCTTCCAGTACAACTTCTCCAACTCCTTTGACAAGTTTATCAGCATTCAAAAGTTGCTCAAGTCCCTGCACATCAACCCCAGCCAGACCCCAGGCCTCCAGCGTCTGCCCCCAGATCTGGTCTTCAAGATCAGACAGTTCTCCTTCGTCTTCCTGGATGATGTGTTTGAGATCAAGCTTAGGGACAACTACGAACTGATGAAGGACGAGAGCAAGCAGAGCTCCAAGAGGCTCCAGCTGCTGGACAAGAAAGTGGCTGACCTACCGAAGCAGCGCAGAGAACTGCTGCCTGCGCATAGAGATCTACATCCAGCGCTCCCGTCGCCTCTACTCCAACACGCCCATGAGGAAGTCTCTTCTGACCTGGAGCTGGTGGCCCTGGCCGACCAGTCCCTCCACGGGCCGGAGCGCGTCCGCGAGCAGCTGAGGGACATCGATGGAGTCAGCCCCTTCCCCAGAGACGGGCTCCCCCTCGTGGTGCCGGGCAATCAAGTTCAACCTCACTGCCTTCTTGGTGAGAATCCGGGACTATCCTCGTTACCTGTTTGAGATCCGGGACTGGGAGCTGTCAGGCCGTCTGATCGGGACCGAGCAGGACGGGCTCGCCACAGGCAGATGCTGCCACTAGGCCAGCCATGGGGAGATGTAACCATCCACAGGAACATGCCACCACTCAAGTTCTACTGCGATTTCAAATGTGAGTCAAGTGTTTCAATGAAACGCGATCCTCGTTTTTTGAGAtcaacacttgtattttcaacAGTTGGCAATAGACACACACTGGACGATCACAtacggtgcatttggaaagtattcagaccccctcactttgattggagtccacctgattCGGGCACGTTGATGAGGCTGATCTCAGAGTGGAACGTGACCCAGATGGTTTCAGAGCTGTCCCTGATGACGACGGCCGACCACCAGATCAACGCCCAGGTGAAGAAGACCCACTTGCTCGGCCTGTCCTCCTTCAGTTACCAGCGCCAGAGCAACCGCATGGAGGAGGAAAGACAACGGGGAGGGGATGGTAGACACCCCAAAGTTGATGGCACAGACTGCGAGGTGAACCCAAAAGATGAGGTGAATGCCCCGTACACCCACAAGCTGTACCTGGTTGACCTGCGAGCCGCCTGGACCACCACTAACAGGAACATAGCAGTCGGTCTGTACGACGGCTACAAGAAGGCAGCTGTTCTCAAGAGGAACCTCTCCATAGAGGCTCTGAAGGGCCTGAGGATAGACTGCTACACTGCAAGCTGCCAAGAAGCTCAAGCGCTCTTTGTCCAACTACTCTGGCGGCCACAGCACAGCCCCCTCCACCCCAACCATGCCCAGCACCAGCCGCCCTGAGAAGAGCCCGTACGAAGggACATCCATGCTGCAGAAGCTAATTGCAGAGACTAATAAGTTTGTGGTGTTCTCAGAGGAGGACTCTGGTGTGAGTGATCAGCTGTGTGGCATCGCTGCCTGCCAGACAGACGACGTCTACATCCGCAACTGGTTCATTTGAGCTGGTCAACTGTCAGataATGTTGTGTGGCACAGAGACAGCTGGCTGACGGCTGGTGTCTGCTGCCAAGGCCCAGGTGCTGCAGTGTGAGCACCACCCGGTCTGGTACAGCGACACCCTCAAGCAGAAGACCACCTGGACCTGTCTGCTGGACAGCATGcagtactttgccaccatggaACCCAACCCCTCAGAGCAGGAGGACTGGCAGCTGTGGCTTGAGGTGAAAAACATTGAGGAGCACAGGAAGCGTCACCTGGACTCCGTGCTGGAGCTGATGGAGAGTGGTCAGGCTGTTGGAGGCATGGTCAGCACCACCACAGACTGGAACCAGCCGGCCCAGGTGAATGACACCCAGCAGGTCCAGCGTATCATCTCTCGTTGCAGCTGTCGCATGTACTACATCGGCTACAGCCACGACATCGACCCTGAGCTGGCCACGCAGATCAAACCCCCAGAGCTACGGCGCAACGAGAAGGAAGACTTGCTTAGAGTGGGAGGAAACATACCATCAGGGGCTGTGGACACCTTCACCCTCATTCACCATGACCTGGAGATCTCCACCAACCCTGTGCAGTATGCTATGATCCTGGACATCGTCAACAACCTATTGCTGCACGTTGAGCCCAAACGCAAGGAGCACAGTGAGAAGAAGCAGCAAGTGCGTTTCCAGCTGGAGATCTCCAGTAACCCAGAGGAGCAGCGCAGCAGCATTCTATACCTGCAGGAGGCTGTCAGGCAGCACATGTCCCAGATCAGACTCCTGGAGAAACAGATCTAATCCAATATCAGGGCCCAGCCTGTGGAGCTGAGAGGGGATGAGCAGTCAGAGATCAACGTGAGGCTGCAGAACCAGCTCAACCTGGGAGAAGACTGACATGCAGATGAAGAGTGAGGTGCTCAACATCCTCATCAGATGTTTTAAAGACTTCCTGCTGCAGAGGGCCAATAAGCTGGAGCTGCGTAAACCCCCGGGGGACGTGAGTGTGGTTCGCAGGACAGAGATCTGCTTTGCCCAGGCCCGCTGGTGtctcactgaggaggatggacaGCTGGGCATTGCTGAGCTGGAGCTGCAGAGGTTCATGTACAGCAAGTCAGACGACACAGCAGAACATCTCCTGGAACTGGGCTGGTTCACCATGAACAACCTGCTCCCCAACGCTGCATACAAGGTGGTGTTGCGTCCTCAGATCCCGTGTCATTCTGGCCGTCAGTTTGCCCTGCGCATCTTCAGTAAGGTCCGCTCCCCAGTGGGAGGCATCTCAGTCAAGGAGCACTTTGAGGTGAATGTGGTTCCTCTCACCATCCAGCTCATGTACCCGTTCTTCAAAAGGATGATGGAATTCTTTTTCCCAGGAAGGaacgtggaggaggaggaagttgcTGATGAGGAAGACAAGTCCCGAATGGTCACTACTGagctctatggacccctaccgaccaagccctccctaacccgggcgacgctaggccaattggcgaacccagggactctgatggcacagctggcgctgcagtacagcgcccttaaccactgcgccacccgggaggccctcctAAAGCTATTTTTATGTTACAATATAGAACTATGTATAGTTGACTTCATTCATATgtcctatatacagtggggcaaaaaagtattCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2358900 lncRNA downstream 1367 21289993 ~ 21294151 (-) True LOC118936433
TU2358749 lncRNA downstream 58468 21236784 ~ 21237050 (-) True G2062513
TU2358716 lncRNA downstream 92761 21202398 ~ 21202757 (-) True G2062494
TU2358659 lncRNA downstream 101734 21184234 ~ 21193784 (-) True LOC110507761
TU2358704 lncRNA downstream 136682 21158423 ~ 21158836 (-) True G2062482
TU2358901 lncRNA upstream 5370 21316807 ~ 21317846 (-) True G2062648
TU2358991 lncRNA upstream 109729 21421166 ~ 21421491 (-) True G2062729
TU2358899 lncRNA upstream 110424 21421861 ~ 21422135 (-) True G2062646
TU2358992 lncRNA upstream 110821 21422258 ~ 21422522 (-) True G2062730
TU2358994 lncRNA upstream 122035 21433472 ~ 21433677 (-) True G2062732
XR_005040009.1 mRNA downstream 415 21290731 ~ 21295103 (-) False LOC118936433
XR_005040010.1 mRNA downstream 415 21290731 ~ 21295103 (-) False LOC118936433
XR_005040011.1 mRNA downstream 419 21290731 ~ 21295099 (-) False LOC118936433
XM_021587993.2 mRNA downstream 7443 21280128 ~ 21288075 (-) True LOC110507766
XM_021587990.2 mRNA downstream 16702 21273320 ~ 21278816 (-) False LOC110507763
XR_005040012.1 mRNA upstream 2 21311439 ~ 21313774 (-) True LOC110507767
XM_021587997.2 mRNA upstream 7028 21318465 ~ 21324425 (-) True LOC110507769
XM_036965791.1 mRNA upstream 15846 21327283 ~ 21413764 (-) True LOC110507127
XM_021587998.2 mRNA upstream 102914 21414351 ~ 21419368 (-) True LOC110507770
XM_036965513.1 mRNA upstream 343693 21655130 ~ 21668508 (-) True LOC110507773
TU2358915 other downstream 22717 21270167 ~ 21272801 (-) True LOC110507765
TU2358911 other downstream 22830 21270167 ~ 21272688 (-) False LOC110507765
TU2358439 other downstream 373143 20914114 ~ 20922375 (-) True LOC110507754
TU2354506 other downstream 3372766 17922342 ~ 17922752 (-) True G2058724
TU2354252 other downstream 3825697 17464521 ~ 17469821 (-) True LOC110507661
TU2360564 other upstream 1401226 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other upstream 1401226 22712663 ~ 22717020 (-) False LOC110507789
TU2360569 other upstream 1401226 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other upstream 1401226 22712663 ~ 22718106 (-) False LOC110507789
TU2360712 other upstream 1492821 22804258 ~ 22808106 (-) False zbtb16b

Expression Profile