RNA id: XR_005040012.1


Basic Information

Item Value
RNA id XR_005040012.1
length 1755
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110507767
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 21311439 ~ 21313774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttttagagaaacaagtcaccctggttggccctttaactagctgtgtaaggtcaaaggtattagtgatccgTTTGAGGGTTTTCCTACAAAACTTGTCTTCATAATTAATGTTAAAATCTCCCATTAAGATTACCTCTTTCCCAAAGTCACATTCCCTAAGCATGTTATTAAACTGATCAAAAAACACACTTTTGGTGGAAGGTGGCCTATACATTCCAATAAGGGTAAAATACATTTGGGGAGACAGTGTAACTTTCAGGCCAATACATTCTAGTTtattatcacatgaccactcaatttgtttacttcggatatgttctttaatgtaaatcatcacacccctcctcttccttcaatcCTGTCTCTCCTGAAGACATTGTAGCCAATCACAATCAAAGCAGCATATGGAGAGGTTTTATGGAGCCATGTCTCTGAGAGGCAGAGGAAGTCAAGGTTGGAGTCTGTGAGTGGATGTTGAATTTGGTCACTTTTTGGAATGACACTACGAATGTTCAAGTGCCCCCCTAGTGGTCCCTTGGGCATAGCTCGTGGGTCCCAGATGACTCGAGAGTGATTGACACATtgaaaaaagttacattttctgTGTTTTCTGATGGCTGGGTTTAGGCCGTTTTGTTTCGTTTTGATTAGGGGCAGTTCGGTAGCGCAATTAACAATCCCTCCCGCCTGCACTGGATGCAGGGAACTAATTAAAACAGCTTGGGTACCAGAAGTAGAGTCAGGAATCGCATATCGCGACTTGGGTATGTTTGAAGAGTCAAAATCTATCCTGGAGCCGGGTGAGTCGAGAGAAACCATGGGACCATAGCACTCACCCACTTCCACAGCGGCGACGATCAGTGGACGAGGCCATCAACCGCTTTTCACTCCGGAGGTGCCTGGAGTTGTGTGTGGGCGAGACCAGAGTGAGAGTGGACCTGCAACAGCCTCTGAGACCTTGGGCGCCTAAGAGCTGTGATGGAGGAGAGTCGGAAGGTTCCTCTTAGCCCCGCAACCCTGCGGTTTATCTCCCAGtTGCTGTCTTTCCATATTGACTCCATCAACGTGATGGTGTTTAACCTAGCCCTGTCAGAGTCTCTATGGTACATGACCACCTCAAGTATTGACCTACTGCTCAACCATCAGGGCAAAAGGTATTAAACCTCCACACACTCTAAAGTCATCTAAACAGATCGGTCTTATCTTAGCCTGTCTGTTTAAATGTTCATGATTTTTCATATCAATTTCTCAAACTTTCATTACAGGTTGGCCTGGGACTTTTTCTGTGGGGCAGCTAAGCAGTAAAGTGCTTAAAATCAGAGTGGAGTTTTTTCCCATGTAAACATAGCAGTCTTTTGAGTGTCTCTCTTTAAATAAGTGTTACTTAACAGAATGTATTTCACTGCATTGTCTCAACTCACTGCTCAGCAGGATACATGTCTGCCAGAGACGTCCCTGAGCCTGGTGCTGTCTGGGGATGTCAGCCTACCAGAGCTGGGTCCAGGCCGAACGGCCCTGTGTGTGAGAACACTGCTGGCTGAGCTGCACAAAGGCTTGTTCCTCAGCCAGCTACtgcttccacctcctcctctggaGAGCACTCTCTCTGCAGATGAATGTGGAAAGGACAAGTTTTTCCAGACTGAAGCAGTGGAGCAGTTTCATCAGCTGGTGCCCCAGAAGGTCAGCGTGGAGTTTGAGAATACTAGTATAACCCTGTCCATGCACAGCCAGAAAAGGTGAGTCATAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2358900 lncRNA downstream 17288 21289993 ~ 21294151 (-) True LOC118936433
TU2358749 lncRNA downstream 74389 21236784 ~ 21237050 (-) True G2062513
TU2358716 lncRNA downstream 108682 21202398 ~ 21202757 (-) True G2062494
TU2358659 lncRNA downstream 117655 21184234 ~ 21193784 (-) True LOC110507761
TU2358704 lncRNA downstream 152603 21158423 ~ 21158836 (-) True G2062482
TU2358901 lncRNA upstream 3033 21316807 ~ 21317846 (-) True G2062648
TU2358991 lncRNA upstream 107392 21421166 ~ 21421491 (-) True G2062729
TU2358899 lncRNA upstream 108087 21421861 ~ 21422135 (-) True G2062646
TU2358992 lncRNA upstream 108484 21422258 ~ 21422522 (-) True G2062730
TU2358994 lncRNA upstream 119698 21433472 ~ 21433677 (-) True G2062732
LOC110507126 mRNA downstream 2 21295518 ~ 21311437 (-) False LOC110507126
XR_005040009.1 mRNA downstream 16336 21290731 ~ 21295103 (-) False LOC118936433
XR_005040010.1 mRNA downstream 16336 21290731 ~ 21295103 (-) False LOC118936433
XR_005040011.1 mRNA downstream 16340 21290731 ~ 21295099 (-) False LOC118936433
XM_021587993.2 mRNA downstream 23364 21280128 ~ 21288075 (-) True LOC110507766
XM_021587997.2 mRNA upstream 4691 21318465 ~ 21324425 (-) True LOC110507769
XM_036965791.1 mRNA upstream 13509 21327283 ~ 21413764 (-) True LOC110507127
XM_021587998.2 mRNA upstream 100577 21414351 ~ 21419368 (-) True LOC110507770
XM_036965513.1 mRNA upstream 341356 21655130 ~ 21668508 (-) True LOC110507773
XM_021588002.2 mRNA upstream 370343 21684117 ~ 21693325 (-) True LOC110507775
TU2358893 other downstream 7311 21297665 ~ 21304128 (-) True LOC110507126
TU2358915 other downstream 38638 21270167 ~ 21272801 (-) True LOC110507765
TU2358911 other downstream 38751 21270167 ~ 21272688 (-) False LOC110507765
TU2358439 other downstream 389064 20914114 ~ 20922375 (-) True LOC110507754
TU2354506 other downstream 3388687 17922342 ~ 17922752 (-) True G2058724
TU2360564 other upstream 1398889 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other upstream 1398889 22712663 ~ 22717020 (-) False LOC110507789
TU2360569 other upstream 1398889 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other upstream 1398889 22712663 ~ 22718106 (-) False LOC110507789
TU2360712 other upstream 1490484 22804258 ~ 22808106 (-) False zbtb16b

Expression Profile