RNA id: XM_021587997.2


Basic Information

Item Value
RNA id XM_021587997.2
length 1697
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110507769
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 21318465 ~ 21324425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCAATCGATTGCAAGGCTCCTCAATCGACGTACACAAACTGAGCGTGATATATAATCGTATAGTACATAGCAAACTCACCGGGTGAACATGGCTTCGAGTCGAGCCTTGCATTTTGTTTTCAAAGTGGGTGACAGAAGAAAAACGGCCACCTTTTACCGAGATGTGCTCGGCATGAAGATTTTGCGTCACGAAGAGTTTGAAGAAGGATGCAAGGCCACTTGTAATGGCCCTTATGATGGAAAATGGAGCAAGACAATGGTCGGCTTTGGTCCAGAAGATGatcactttgcggctgagctgacCTACAATTATGGAGTGGGAGAATATCGCCTTGGCAATGACTTCCTGGGTCTAACTCTGCAGTCTAGCCAGGCTGTCAGTAATGCTAAGCGGCTTGGTTGGCCCCTCATTGAGGTTGGAAAGGCCCTCTATCTGGCTGAGGCTCCAGGAGGTTATCGCTTCTACCTGGTGGACAAAGAACAGCCTCCTAATGATCCTGTACAGAAGGTGTGTCTGGCAGTGTCTGACCTGCAGAAATCAACACACTACTGGTCCTCCCTTTTGGGGATGAAGGTGATAGAGAGACATGAGGAGAAGACTGTGCTGATGGGATTCGCAGACACTCAGTGTAAACTAGAGCTTCACAACATTGGTGGGACAGTAGATCATGGGACAGCCTTCGGGCGGATAGCGTTCTCTTGTCCACGTGAGCAGtTGGCAGATCTTGAAGCCCTGATGACAAAAGAGAACCAGAAAATCCTTACTCCCTTGATTAGCCTGGACACCCCTGGGAAGGCAACAGTAGAAGTGGTCATTTTGGCTGATCCAGATGCCCATGAGATCTGCTTTGTGGGAGATGAGGCATTCAGACAACTCTCCCAGATGGACCCCAGTGGAAATGCATTGCTGGATAAGGCTATGGCTGAAGATAAAAGCGATGACTGGTTTGCCAAGCACAACAAGCAGAAGGCTTCAGCATAAGTGTGAAGAACATAGCTTAGCCATCATGGGTCTTCTGGACATTTCCAACCTTTTGCCCCATATATGGCATTACCCTTCCAGCGGCACAATGTCAGTAGATTTTACTCAACCAGAAGTGTTATTTTGAGATGCTTAGAATGAGACTGAAAGTGTAGCTGTATTTGAGTCATACTGTGGCAGACGCTTGATGATCATAGACCACTTATATTAACCTTGTTTGTGTATGCATTGAAAATAATTGTACCTCTTCAGCTCAATGACATGAGTAAAACACTAATACCTGTGACTTCATGAGAACAGTGCATTTATGGTGAAGAGTAATATCCATGTGAAGTCCTCACACTGCCAAATTGTAGGTAAAGTTTTGTGAAATGTGCAGACATTGGTGGGCGGCCCTTGGTTGAAAAAACAATGAAACGAGGGGGTATATGCATATCTCTTGTGGTGTAGAAGCTGTGTCATGTCATGCTCATTGAACTATAATATGGGAAAATCAAACTGAGCAATATCAAAAGGGGATGGCATGAACATTTTCTTGAAGATGGGAGAATTGCCTCACCTTTGCTAACAACTCACTCCAACTACCATTTTCTAGTGATCCCCTTTCTTTGGCATGAGATGAATGACACTGAATAAGAAAGTGTCTAGTTCATTTTTAAACTAGCTGTTCTTGAGTGGTTATGCTGCATAATAAAGGGAGAAGCATGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2358901 lncRNA downstream 619 21316807 ~ 21317846 (-) True G2062648
TU2358900 lncRNA downstream 24314 21289993 ~ 21294151 (-) True LOC118936433
TU2358749 lncRNA downstream 81415 21236784 ~ 21237050 (-) True G2062513
TU2358716 lncRNA downstream 115708 21202398 ~ 21202757 (-) True G2062494
TU2358659 lncRNA downstream 124681 21184234 ~ 21193784 (-) True LOC110507761
TU2358991 lncRNA upstream 96741 21421166 ~ 21421491 (-) True G2062729
TU2358899 lncRNA upstream 97436 21421861 ~ 21422135 (-) True G2062646
TU2358992 lncRNA upstream 97833 21422258 ~ 21422522 (-) True G2062730
TU2358994 lncRNA upstream 109047 21433472 ~ 21433677 (-) True G2062732
TU2358996 lncRNA upstream 109985 21434410 ~ 21434688 (-) True G2062734
XR_005040012.1 mRNA downstream 4691 21311439 ~ 21313774 (-) True LOC110507767
LOC110507126 mRNA downstream 7028 21295518 ~ 21311437 (-) False LOC110507126
XR_005040009.1 mRNA downstream 23362 21290731 ~ 21295103 (-) False LOC118936433
XR_005040010.1 mRNA downstream 23362 21290731 ~ 21295103 (-) False LOC118936433
XR_005040011.1 mRNA downstream 23366 21290731 ~ 21295099 (-) False LOC118936433
XM_036965791.1 mRNA upstream 2858 21327283 ~ 21413764 (-) True LOC110507127
XM_021587998.2 mRNA upstream 89926 21414351 ~ 21419368 (-) True LOC110507770
XM_036965513.1 mRNA upstream 330705 21655130 ~ 21668508 (-) True LOC110507773
XM_021588002.2 mRNA upstream 359692 21684117 ~ 21693325 (-) True LOC110507775
NM_001246351.1 mRNA upstream 373888 21698313 ~ 21701463 (-) True serpinf2b
TU2358893 other downstream 14337 21297665 ~ 21304128 (-) True LOC110507126
TU2358915 other downstream 45664 21270167 ~ 21272801 (-) True LOC110507765
TU2358911 other downstream 45777 21270167 ~ 21272688 (-) False LOC110507765
TU2358439 other downstream 396090 20914114 ~ 20922375 (-) True LOC110507754
TU2354506 other downstream 3395713 17922342 ~ 17922752 (-) True G2058724
TU2360564 other upstream 1388238 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other upstream 1388238 22712663 ~ 22717020 (-) False LOC110507789
TU2360569 other upstream 1388238 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other upstream 1388238 22712663 ~ 22718106 (-) False LOC110507789
TU2360712 other upstream 1479833 22804258 ~ 22808106 (-) False zbtb16b

Expression Profile