RNA id: XM_021587998.2


Basic Information

Item Value
RNA id XM_021587998.2
length 1083
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110507770
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 21414351 ~ 21419368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaaaacaccacCTGCTGGACGGAGACAGATTTTCCGCCGAGTTGGGCCTCTCTCTTTACTTCTTCCTCTCTGGTCGTAGTATTTTAGAAGCGATCATAGTCCAACTCGTTTTTATTCTAGCGTGAAACGATTCATACCTGCTTGCTTTGCCTACGATAATTGATAATACTGCTACTTATTCTATTTCATCATGTCTCATTACGAAGAAGTAAAGGTCCATGGTTATGATGAATTCTGCAAAGCAGTGTCTGAGCGAAAAGGAAAGGACATATTCGCATATTTCTCTGGTGATAAAGACGCTCAAGGGATGAGCTGGTGTCCAGATTGTGTGGAAGCTGAGCCAGTTGTTAGAGGAGAGATGTCCCACCTTCCCGAGGGCTCTGTCTTCATCTACTGTCAGGTTGGAGAGAGGCCATATTGGAAGGATCCCAATAATAAGTTCAAGAAGACTCTGAAGCTCAGTGGAGTTCCCACTCTGATCCGATATGGCACGCCTCAGAAGCTGGTTGAAGAGGAGTGCTTCAAAGCTGACCTGGTGAGGATGATGTTCACCGAGGACTAGAGGACCACACTCGCCCTGCACTGGGTCATCTTCCATTTCCCACTGTCCTGTCTTTTTCCTGAGATCCAGCCCCAACCCAGGCACCTTTTCACTACACTAGATTGAACAGAAATTATTGTTTCTTTGAAATTCAAATACACACTCCTCTCCCTGCGAGGTAGTGGTAATCAGTGAATGTGTTGCTATTCTTACATGGAATTAAAAAGCAACTATAACATAACCAGAGGCCTTGGTAGAGCTAGCTGACTGCTTTTATAACTTGATGTTTAATGTAGTAAATTAAATAGAAGAGTTataataacataatataataacacttTTGACAAATATATTAGATACCCCTAAGTGGTAGGCAGCCTACTCCTAGTATGTGATGTGCCAGATGAATTGATGATTCTTACTTATAGCAGAAATCTttatagtgaagatatcaacTGAAACATTACCTGTTATACTGTGATTGGCGTGTTGTTGTGTAGAACTTagtcaaatgaaataaatgaTGGATGGATGAAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2358901 lncRNA downstream 96505 21316807 ~ 21317846 (-) True G2062648
TU2358900 lncRNA downstream 120200 21289993 ~ 21294151 (-) True LOC118936433
TU2358749 lncRNA downstream 177301 21236784 ~ 21237050 (-) True G2062513
TU2358716 lncRNA downstream 211594 21202398 ~ 21202757 (-) True G2062494
TU2358659 lncRNA downstream 220567 21184234 ~ 21193784 (-) True LOC110507761
TU2358991 lncRNA upstream 1798 21421166 ~ 21421491 (-) True G2062729
TU2358899 lncRNA upstream 2493 21421861 ~ 21422135 (-) True G2062646
TU2358992 lncRNA upstream 2890 21422258 ~ 21422522 (-) True G2062730
TU2358994 lncRNA upstream 14104 21433472 ~ 21433677 (-) True G2062732
TU2358996 lncRNA upstream 15042 21434410 ~ 21434688 (-) True G2062734
XM_036965791.1 mRNA downstream 587 21327283 ~ 21413764 (-) True LOC110507127
XM_021587997.2 mRNA downstream 89926 21318465 ~ 21324425 (-) True LOC110507769
XR_005040012.1 mRNA downstream 100577 21311439 ~ 21313774 (-) True LOC110507767
LOC110507126 mRNA downstream 102914 21295518 ~ 21311437 (-) False LOC110507126
XR_005040009.1 mRNA downstream 119248 21290731 ~ 21295103 (-) False LOC118936433
XM_036965513.1 mRNA upstream 235762 21655130 ~ 21668508 (-) True LOC110507773
XM_021588002.2 mRNA upstream 264749 21684117 ~ 21693325 (-) True LOC110507775
NM_001246351.1 mRNA upstream 278945 21698313 ~ 21701463 (-) True serpinf2b
LOC110507129 mRNA upstream 282148 21701516 ~ 21730129 (-) True LOC110507129
XM_021588005.2 mRNA upstream 422093 21841461 ~ 22067487 (-) True LOC110507777
TU2358893 other downstream 110223 21297665 ~ 21304128 (-) True LOC110507126
TU2358915 other downstream 141550 21270167 ~ 21272801 (-) True LOC110507765
TU2358911 other downstream 141663 21270167 ~ 21272688 (-) False LOC110507765
TU2358439 other downstream 491976 20914114 ~ 20922375 (-) True LOC110507754
TU2354506 other downstream 3491599 17922342 ~ 17922752 (-) True G2058724
TU2360564 other upstream 1293295 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other upstream 1293295 22712663 ~ 22717020 (-) False LOC110507789
TU2360569 other upstream 1293295 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other upstream 1293295 22712663 ~ 22718106 (-) False LOC110507789
TU2360712 other upstream 1384890 22804258 ~ 22808106 (-) False zbtb16b

Expression Profile