RNA id: XM_036965513.1


Basic Information

Item Value
RNA id XM_036965513.1
length 2135
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC110507773
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 21655130 ~ 21668508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTCCGTCATCAGATCGGAAGTCTCACTCTGGCAGCTGGTAGCTAGAATACCACCTTGTTCTTACTTGACCATACAGACTTTTCTGAGTGACAGTCTTTAGAAATggatactaatgtaaatgtggcGAGTAGGACGAATGGGAATGAAAACTCTTCATATTCATTGACAATATGTGGGAGCTGTTTGAGATGTATTCGCAGGTTGATTCCTGTTGACTTCAAAAAAGAAATGATTGAATTATCAACATTGGCTGGGCCTGTGGTTATGGCTCAGCTCATGGTATTTTTAGTGAGTTTCGTCAGTACAGTTTTCTGTGGCCATTTGGGGAAGACAGAACTGGCAGGGGTGGCTCTCGCCATAGCTGTGATTAATGTTACAGGTATCTCCATTGGGTCTGGTTTATCATCAGCGTGTGACACACTCATATCTCAGACCTTTGGGAGCCGCAACCTCCTGAAAGTTGGTGTCATTCTACAGAGAGCCATCCTCATTCAACTTCTGGCCTGTTTTCCATGCTGGGCTATTCTCATCAACACAGAACCCATCCTCCTGGCTGTCAAACAGAGCCCAGAGGTCGCCAGGTTGTCTCAGATCTATGTGAAGATTTTTATGCCAGCACTCCCAGCCACTTTTATTTACCAGCTGGAGGCCAGATATCTACAGAATCAGGGAATCATATGGCCGCAGGTCATCACAGGTGTGGTGGCCAACCTACTGAATGCCCTCATCAACTACATCTTCCTCTATGTTCTGGGCCTGGGTGTAGCTGGGTCTGCGTGGGCCAACACCATCTCTCAGCTCTCTCTTGCTGTTATGCTCTATACCTACATCATATGGAAGGGACTACACAAGGCCACCTGGGCAGGCTGGTCTTGGGAGTGCCTGGAAGACTGGGACACATATGTCCACCTGGCCATTCCTAGCATGATCATGCTGTGTGTGGAGTGGTGGACCTATGAGATTGGAGGTTTTCTAGCAGGTCTGATAAGTGAGGTGGAGCTTGGAGCACAATCAGTCGTCTACGAACTGGCAAACATTTGTTACATGTTCCCTCTAGGGTTCAGTGTGGCAGGCAGTGTGAGGGTGGGCAATGCTCTGGGGGCTGGAGATACAGAGCAAGCCAAGCTGTCTGCCAAGCTGGCCATGTTCTGTGCTGGGTCAGTTTCTGTGTGCTTGTCGGTTCTTGTTGGGATACTGAAGGACAAAATCTCCTATGTCTTTACATATGATGAGCAGATCAGAGAGAGGGTTGCTCAAGTTATGGCTTTCTACGCCCCTTTTCTTCTGTTAGATGCAATATCGGCTGCCTCAGGTAGTATTATAAGGGGTGCAGGTAAGCAGAAGGTTGGGGCGATATGCAACGTCCTGGGTTACTATGGGGTTGGCTTTCCTGTTGGAGTGTCCCTGATGTTTGCTGCCAAACTAGGAATCATGGGCCTGTGGACCGGTCTGTTTACCTGTGTGTTCCTACAGTCCTCCTTCCTCATCCTCTACCTATCCAGAATGAACTGGAAGAAAGCCACTGTAGAGGCCCAGATCAGAGCTGAGGTACAGGGGAACTCTACAGACATGGACATGGCCCCAGAGGCCCAATCAAATGATATATCTCCCTGTGAGGGCCACACAGACAGAAATGCCCTGGCTGAGGCTGACGGTGAGGTTGGGGACAGGGTGGCCCTTAGCAAGGTGGAGGCCCTTCTGGCCCACAGGGCCCTGGTTATGCGGAGGGGCCTGGCTCTGTGTGTCATGCTCTTCATCCTGGCCCTGGGAATCATCATCAACCTACTGCTCACCAACCTTACTTGAAGAACACAGAGTGAGTTCCAGAGAGGATGGATTCCAGAGAGGATGGGTTCCAGAGATAGCTCCACTCAACCAGAGTGGTCAAAGGACCACCTAAGCAATGATGCAGAGAAGATAGGACTGGATAGGAGCTGGCCAAACTATGGTGCCAAATTGTTCCAGTACTGTTGGTCTGTGAGGAGCCAACGGATTATATATTCTGGGTCTTTTCATTTTTCATCTGAATGAAATTGTATCACATTGTCTGAGCTGATTACACAAACCAATCAAACCTAATGTTTTCTCATGGTAATAATATAGTGCAAACCAAAAATTAAAGACAGACTCACA

Function

GO:

id name namespace
GO:0006855 drug transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015297 antiporter activity molecular_function

KEGG:

id description
K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2359375 lncRNA downstream 5077 21645931 ~ 21650053 (-) True G2063088
TU2359372 lncRNA downstream 6411 21641956 ~ 21648719 (-) True G2063085
TU2359343 lncRNA downstream 18973 21616455 ~ 21636157 (-) True G2063058
TU2359328 lncRNA downstream 38899 21583768 ~ 21616231 (-) True G2063043
TU2359300 lncRNA downstream 98431 21532795 ~ 21556699 (-) True G2063017
TU2359359 lncRNA upstream 74584 21743092 ~ 21749558 (-) True G2063074
TU2359461 lncRNA upstream 131908 21800416 ~ 21800934 (-) True G2063171
TU2359473 lncRNA upstream 144670 21813178 ~ 21813407 (-) True G2063183
TU2359474 lncRNA upstream 145780 21814288 ~ 21814519 (-) True G2063184
TU2359489 lncRNA upstream 154327 21822835 ~ 21823061 (-) True G2063197
XM_021587998.2 mRNA downstream 235762 21414351 ~ 21419368 (-) True LOC110507770
XM_036965791.1 mRNA downstream 241366 21327283 ~ 21413764 (-) True LOC110507127
XM_021587997.2 mRNA downstream 330705 21318465 ~ 21324425 (-) True LOC110507769
XR_005040012.1 mRNA downstream 341356 21311439 ~ 21313774 (-) True LOC110507767
LOC110507126 mRNA downstream 343693 21295518 ~ 21311437 (-) False LOC110507126
XM_021588002.2 mRNA upstream 15609 21684117 ~ 21693325 (-) True LOC110507775
NM_001246351.1 mRNA upstream 29805 21698313 ~ 21701463 (-) True serpinf2b
LOC110507129 mRNA upstream 33008 21701516 ~ 21730129 (-) True LOC110507129
XM_021588005.2 mRNA upstream 172953 21841461 ~ 22067487 (-) True LOC110507777
XM_036964663.1 mRNA upstream 691091 22359599 ~ 22374956 (-) False LOC110507779
TU2358893 other downstream 351002 21297665 ~ 21304128 (-) True LOC110507126
TU2358915 other downstream 382329 21270167 ~ 21272801 (-) True LOC110507765
TU2358911 other downstream 382442 21270167 ~ 21272688 (-) False LOC110507765
TU2358439 other downstream 732755 20914114 ~ 20922375 (-) True LOC110507754
TU2354506 other downstream 3732378 17922342 ~ 17922752 (-) True G2058724
TU2360564 other upstream 1044155 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other upstream 1044155 22712663 ~ 22717020 (-) False LOC110507789
TU2360569 other upstream 1044155 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other upstream 1044155 22712663 ~ 22718106 (-) False LOC110507789
TU2360712 other upstream 1135750 22804258 ~ 22808106 (-) False zbtb16b

Expression Profile