RNA id: XM_021588002.2


Basic Information

Item Value
RNA id XM_021588002.2
length 2157
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110507775
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 21684117 ~ 21693325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGTATCGCCTTAAGTCAAGGGATGGCAGCATTTCTGAAATCTCTTCGGAATCTGAAGAATGAGATCGTTCTATTCTCTTCCCCGTTACTTCTTCTCCCGCTGCCTTTAGTCGTTGGAACAAAGGAGGCAGAATGTGCCTATGTGATCATCCTGATGGCAGTGTACTGGTGTACAGAGGCCTTACCGCTGGCTGTCACTGCCCTGCTCCCTGCTGTCCTCTTCCCCATGTTTGGCATCATGCAGTCCAAAGACGTGTGTATGCAGTACCTGAAGGACACCAACATGTTGTTTGTGGGAGGACTGATGGTGGCGGTGGCAGTGGAGCACTGGAACCTGCACAAACGCATTGCCCTCCGAGTGCTGCTCTTTGTAGGGGTGCGCCCCGCTCTTCTGATGCTGGGCTTCATGGGGGTGACAGCCTTCCTGTCCATGTGGATCAGTAACACAGCCACCACAGCCATGATGGTGCCCATCGTCCAGGCTGTTCTGGAGCAGCTCAACAACTACACAGAGACTGAGATGCCTGTGATCCTCAGCACTGAGGAGAACCCCCAACCGCAGCACCCCACTGACAGcaaacagacggagaaacaggCAGAGGGACATGTTGTGGTGACCTGTTTAGATCCACTTGTGGAGGCTATCTGGCGTAAGGAAGCTGCAGACAAGAAGAAGATGTGTAAGGGGATGACGCTGTGTGTCTGCTATGCGGCCAGCATCGGGGGCACTGCCACCCTCACAGGGACTGGCCCCAATCTGGTGCTCAAGGGACAGATGAACCAACTGTTTCCTAACAATGGAGATGTCATCAATTTTGCGTCCTGGTTCGGCTTTGCTTTCCCCAACATGATCCTGATGCTTACCATGGCTTGGCTCTGGCTGCAGTTTGTCTTCATGGGATTCAATTTTAAGAAGACGTGGGGCTGTGGGGCagtaaagacagagaaagagatagcTGTGTACAATGTGATCAAGGAGCAGCATCGTCAGCTGGGCTCCATGTCTTTTGGAGAGCTGAGTGTGTTGGGTCTGTTCAGTTGTCTGGTGGTTCTGTGGTTCACCAGAGATCCTGGCTTTGTGGCAGGCTGGGCCACATACATCTTCAACACTGATGCAGAGTATGTAACTGATGCCACAGTGGCAGTGTTCATCGCTGTCCTTCTCTTCGTCCTGCCTTCCAAGCCCCCACGCTTCTGCTGCAGGAGGTCCCGAAGCTTTGACACTAAGCTTCAGCACCCGGCTGGCCCCACACCAGCTCTGCTGACCTGGAAGGTGGCCCAGAAGAAGTTACCCTGGAGCATCGTTCTCCTCTTGGGGGGAGGGTTCGCCCTGGCCAAGGGCAGCGAGGAGTCAGGTCTGTCTATGTGGATGGGGGACCAGATGACTCCCCTCCACACCATCCCACCCTGGGCCATCGCTATCATCCTGTGTCTGCTGATGGCCATCTTCACCGAGTGCACCAGTAATGTGGCCACTGCCACTCTCTTCCTACCTGTCCTCGCCTCAATGTCCCAGTCCATTGGAATGAATCCTCTGTACGTCATGGTGCCTTGTACTCTCAGTGCCTCCTTTGCCTTCATGCTACCTGTGGCCACACCGCCCAATGCTATCGTCTTCTCATTTGGCTACCTCAAGGTTTCTGACATGgCTAGGACAGGTATAGTGATGAACATCATCGGCATCCTGTGCATCACTCTGGCCATCAATAGCTGGGGCAGGGCCATGTTCCACCTAGACACCTTCCCTACCTGGGCCAACACTACTGGGGTGTGAGGGTCCCCGGGCCAGGCCATGAGGAACACATGGAGGGCCCCGAGAAAGGAATCAACGTGACTGGTCGTGTTAGTGTGTTGGGTGTTGGGAGAAAAGCCACGTAGCTTCCATTATGAAGGACACTTGAATCACCCTGTAGAAAgaacgatggatggatgggtttAACTGGAGAGAAGAATGATGAAGGGTGGAGAGTATCACTACTGTACTTTTAATGCTGTAATGTGTTATACAGAATGTCCAGTCCTATTCAAAATGCCCAAGCATTATCTCTATCaaatcaatcacatgtatttataaaggcCTTTTTACATCagtcgatgtcacaaagtgctatacagaaactcagcctaaaacctcaaacaggaagcaatgcagatg

Function

GO: NA

KEGG:

id description
K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2359368 lncRNA downstream 4574 21640507 ~ 21679543 (-) True G2063082
TU2359375 lncRNA downstream 34064 21645931 ~ 21650053 (-) True G2063088
TU2359372 lncRNA downstream 35398 21641956 ~ 21648719 (-) True G2063085
TU2359343 lncRNA downstream 47960 21616455 ~ 21636157 (-) True G2063058
TU2359328 lncRNA downstream 67886 21583768 ~ 21616231 (-) True G2063043
TU2359359 lncRNA upstream 49767 21743092 ~ 21749558 (-) True G2063074
TU2359461 lncRNA upstream 107091 21800416 ~ 21800934 (-) True G2063171
TU2359473 lncRNA upstream 119853 21813178 ~ 21813407 (-) True G2063183
TU2359474 lncRNA upstream 120963 21814288 ~ 21814519 (-) True G2063184
TU2359489 lncRNA upstream 129510 21822835 ~ 21823061 (-) True G2063197
XM_036965513.1 mRNA downstream 15609 21655130 ~ 21668508 (-) True LOC110507773
XM_021587998.2 mRNA downstream 264749 21414351 ~ 21419368 (-) True LOC110507770
XM_036965791.1 mRNA downstream 270353 21327283 ~ 21413764 (-) True LOC110507127
XM_021587997.2 mRNA downstream 359692 21318465 ~ 21324425 (-) True LOC110507769
XR_005040012.1 mRNA downstream 370343 21311439 ~ 21313774 (-) True LOC110507767
NM_001246351.1 mRNA upstream 4988 21698313 ~ 21701463 (-) True serpinf2b
LOC110507129 mRNA upstream 8191 21701516 ~ 21730129 (-) True LOC110507129
XM_021588005.2 mRNA upstream 148136 21841461 ~ 22067487 (-) True LOC110507777
XM_036964663.1 mRNA upstream 666274 22359599 ~ 22374956 (-) False LOC110507779
XM_021588010.2 mRNA upstream 666274 22359599 ~ 22375584 (-) False LOC110507779
TU2358893 other downstream 379989 21297665 ~ 21304128 (-) True LOC110507126
TU2358915 other downstream 411316 21270167 ~ 21272801 (-) True LOC110507765
TU2358911 other downstream 411429 21270167 ~ 21272688 (-) False LOC110507765
TU2358439 other downstream 761742 20914114 ~ 20922375 (-) True LOC110507754
TU2354506 other downstream 3761365 17922342 ~ 17922752 (-) True G2058724
TU2360564 other upstream 1019338 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other upstream 1019338 22712663 ~ 22717020 (-) False LOC110507789
TU2360569 other upstream 1019338 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other upstream 1019338 22712663 ~ 22718106 (-) False LOC110507789
TU2360712 other upstream 1110933 22804258 ~ 22808106 (-) False zbtb16b

Expression Profile