RNA id: LOC110507129


Basic Information

Item Value
RNA id LOC110507129
length 6144
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110507129
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 21701516 ~ 21730129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCTCTTTCAATGGAAGAGTGAGAGAGTCCTCCTCTGTGCTGGAGGGAGCCATTGGGAGGACAGTCTGTCAGACCTGGATGAGTAGGTTACCATGGAGTGGCTAGTGTCGGCTGTAGGGAAGGACCTAGGGTTGGACCGTTGGCAGCTGGGTCCAGGGCCCGGCCTCAAGAGCTGGTGGCCCTGGTCCCCACCCGCTGGGTGATGGGCCTAAGGGAGAGGTGGGGCATCTGTTGTGCCCGTTCAGAGAGCGCCAGAGAGCCTGAGATTTGCACCTACCTCTAGCGCTCCCTGGTGAAGCTGCCTCCTGGCTGGACCCGTGTGCGCATCCAGGGCTTGAGGAAAAGCAAGCTGAGCTACAGGCTGGCAAGGGACCCAGGCTGCCAATTAGTCTCCCAGGATTCTTTCATGAAGACCATTGGCTACAGAGCACATGCATGTAGCAGCCATAGATACTTTGTCATAGATACTTTGTGCCAAGTGCTGCAGAAGCTCTTCTGCTCTACATTTGTCTCATCCCTCTCCCCTGCCAGAGACAAGGAGAAAGACAACCCATTCTCCCCAACCAGCTCTTCCTCCTTCACTAAGCTCCCCTCAGACCAACTGTGTCCTAACGTTCTCTCTGCTAAGTGCCTACTGGAGTCAGCAGAGATGCTCTACGTGGTTCTCCCTTACACCCAGTACTCACTCCACGACGTCGCCAGCTACAGCCCAGCCAAGCTGACCAACAGCCATGCCAAAGTGCGGTTCATCCTCTACCAGTTATTGATCGCGTTGCGGGCCTGTCAGGCGTCGGGGCTATCCTGTGGAGCGCTCTCCCTGCAGAACATAGCGGTGGACGAGCAGCTCTGCAGCCACCTCAAGGTCACCCTGGCCCATTATGAAAAGctgggggaggacagagaggctgACTGCTATGTTACAGAGGGAAAAGTCCCAAGAAGCTTCAAGGTGAGGGACCAGCTCAAGTCCTTGGTCCTGGACTGGGTCCATGGTAGAGTCAGCAACTTCCGCTACCTGATGGAGCTGAACAAGTTAGCTGGACGGCGGGAGGGAGACCCTAACTACCACCCTATCCTGCCTTGGATGGTGGACTTCACTGTGCCATATGGGAGGTTCCAGGACCTCAGGCGGTCCAAGTTCAGGCTGAACAAAGGAGACAAGCAGCTGGACTTTACCTATGAGATGACCAAAGAGGCCCTTGCAGCAGCAGTGGCTTACGGAGGGCAGTCTGAACACCTACAGGTGCCACATCACATCTCAGACGTGTTGTCAGACATCACCTACTATGTCTACAGGGCCCGTGACCAAGTATCTTCTGAAGCCCCTGGTCAGTGTGTACTAGATCTCACGGTGCCTCAAAGGTTGCTTCTACCTCTACAAAGACTGCTTGGTTCTGCAGCTGATTGTCAGACTGGGTCTGCAGGCCTTCCTGTCCAGCCTCCTGCCACATTGGAGGGGCTGGGGTTACTTCCAGAATGGCTTCTACGTCAACAATGGAGCAGGGGAGTTACTGGGGGAAAACTGCAGTGTCAGAACTCACCAGTAGGAGGCAACGAGCAGGACCTGGAGTATTTGAGCTTGGGGAAACTGAGCGACAAGGACAGCACTAGCGAGGTCTCTATCGGAGACGCCGACTCCACTTGGGACTGAACCAGTCTGAAGTCAGCTGACAGCAGCCAGGTCTTGAAGCAGGCCagcgagggagaggagctggaggaagagactgagacagactgaggaagggaaggagagagggacatgggAGGGCAGTGGTCCCAGCCTAGAACTGACGTTATCTGGCTGCACAGAGGAGACAGTGGCCACCCTGGAGGGTGAGTTTATCAATGGCATGGATTTGGAGGACTCACTGAAAGAcatggtgggagaggaggaggaggaggaagagcatgACCCGTGTGAGGACTCGGAGGAAAAAGAGCAGAAGATCCTTTTAGACACGGTCTGCAAGACTGTTAGATGGCTGTCTGCAAAGCTTGGACCCACAGTGACGTCTCGATATGTGGCCAGGAATCTGCTCCGGCTGCTCACCATCTGCTACATTGGTTCCCCAGTGGAGTGCAGACACGTTCGGCTGTGTGCCTGATGACTCATCTGTCTGCGCATCGGCAGGGAGATGGTGCAGCAACACATGGTAGAAACCCTGAAACGCTTCTTCACTGTCTTCTCCCTGCTGCAGTGCCTACAGGGACAGGGAAACACTGGCCTTACTGGAAGTGAAATGGAGAGTTCCCCCTGCAGGGAAGTGGGAGAATGCACCTTGCTGGATGTGTGTACGGCAGAGGGGTCAGAGGTGACGTGTGAGCtgggggttctggaggagctGCAGGCCATGTTGAACCCTAAGATGGCATACACCTCCCACATCCCCTTCTACTGCCTTCATAGCCACCCCCCCAGCAGGGTCCAAGGACAGGGTAGAGATGCCCCCCACCACCTGCTCCATTGGCCCCTCCCTGGTCTGGGATGCCATGTGGGCCGCCCCTTCCCTGCCCCCTACTCCTCCACGCCCCTGGGCTCAGACATTCTCCCAGAGTcaggcacctttggcagccatctGGTGGGCAACCACATCCAGGAGGCCCTGGGGGGTGGGAGCCCCATCCTGGGCTCATTAGACAACTGGAGCCACCCCCGGCCTAGTCATACTCAGCCTGTCATCTCGTCTGCCTCCACCTTCACCACTCCATCCCTaggcccctcctcctcctcctcctgggtGGTGGATCCTACCCCAGAGGACAGCGCTCTGAAACAGGAGCTCCCTCGCGGTGGCTTCTCCCTGCAGGGCAACTGGCTGGCCTGCTGGCAGTATGAGATCGGTCTCAACCAGCAGGATCCCCACTTTGACTTCCACCAGATCCGCCTGCAGAGCTTCCTGGACCATTTGGGCATGTGATTGGCTCCACTTGCTGGGGAGGAATACTTCCTGTCTGGTAGCACGGACAAAACAGTGAAGCTGTGGCCCCTCTATAACCACGGCGACGGGACGCTGGAGGTGGAGCCAAGGCTGACCTACACGGATCATAAGAAGTCTCTGTTCTGTGTTAGCCATCTGGAGGCGCTCAAGGAGGTGGTCAGCTGTGACGCCACCGTGCACCTCTGGGACCAGTTCACAGGTGAACAGATCTGCTACTATGAGGCCCTGGATGTGAAGATCGCCATCACAGCAGTGACCACCATGCCTGCTCctcactgtagtgtagtgtttgcCAGTGCAGACTCTCCTCCACTTCATCGACCCAGGCCTagCCCTGGAGGGCGCACTGTGGCAGCAGGCTTCTCCTCTGGCTTCATCGTGCTGCTAGACGCACGCACAGGCCTGGTGCTGAGACATCCTGCAGACCTGTGTGTTTTGTGGGCTGCTGAGGGAAACCTGGTCATCAGTTTGTCCACTGACCACACTCTGACTGTGTGGAAAGACCTGGAACACAAGCCCCTCCACCAGTACAAGTGACCCTCCAACCCGGTCCATGCCTTCGACCTGTACGGGGAAGAGATCGTGGCGGGCACCGTGGCCAACAAGATAAGGGTGTACTCCATGATGAACATCTCtgccagcccagccagcagcacCAAGCTCAGCTTGGAGAACTTTCGTGGAACCCTCACCAGCCCGGCTGTGCTGCCCACCAAGAGGCTCCTGCTGCTGGGTTTAGAGAATGGGGCCATCAGGCTGCTAGCTTAGGGGCTAACATATAACAAACTGGCTCAGCTAGCTGTAGACTCTGCTGTTGACTTTTGCTGAAGGTGTCCTATTCCTAAAGCGTGTTGCCTGTATCCTGagcctctctccgctcctccccgTGTGGGATTGAGGCTAGACTCGCTGATGAGGCAAGTGGTGAGGTcctcaaaacatgtttttactaaggagagagaggaccaCTTAAAGACTACTTACATGATCCTTAAACTGAGAGGACTTTGCCTGTCTGCTCTGCTGTAGTCAACGACCAAAATAAAGATGAAGTGTTGTATCACTCATTCGAGGATAGATCTACTGTAGGGGGCAACTAAACACTTGATTATGACTTTTACCATTTATCTCTCGATCTTATATTATGAATAAGATTCTTATCCTTGACTCGGTCAATATTATTTTCAAAAGGAAGTGCTCAGGAAGGTGGAGCATTGCATGTCTCTGATGTAGTGTTGGTACTTTCCAAATAGATGCATACCTATCAACCAACAGCAAAAACGACTGATTCGCATTTCACACACCCACACCTGTCATTATTATCTCCCTGACATTAGATCACACCATGCATCAGGTGCACTGAATAACTATGCTGTATTTCTagatgagaaaaaaatacaaatacattttaaatctgTTTGCCATGTCTTTCTAAAGATTGAAGGCCTTCTCACCTTACATTGTTTCAGAATTGTAAAAAATTAAACCAACACAAGACCATTTGATTTTACAAGTGTTAATGCATCTACTTAATGCAGACGAGCTGAAGGTTTGACAAGAGGGATGGCAGAGTCACGATGTGATTCTTCAACCTGTAACTGCTGTGTGCCAAGGTCACATGGTCAAATCCTACTGCACAACAAGGAGCGCCATTTATCAAGCTATTCTCGATCACATTTTAAGATTATTTTACAATTTAATGGTTTAATATTAGCGTCGTTAACATTTCTTTTTAATAATTCTGGACCATGGTTGCCGATTAGAAATAATCCGTTTGTAGGCCTAATTAAAGAAAGGTTGTTTTTATGTAATGTATCATGATGAAACGCACTCAGACATTAAGCAAGCAATGTGTTTGGACTCTAATTTGTCCATAACATCAACTGGCATAGGAACAAAGAATCCAAGCCAAGACCCAATTGACTTTTGTATTGTAATAACTATGCCTTATATGTAATCACAAATTGGCAGTATAAGAAAAAGAATGGCAAGAAAAAACAAGTGTATGTACCTTGTTATCCTGAATGGGAAGCTTATCTGTTCCACCATAACACCTGTTGCCAAAGTTTTCACTCCTGTTCATAGTCCATCTTTAAGACAGTCTACTCTGCTCCCAAGGGTGTCTGTGCTCCTCTGCACTTTTAAGATGTGCATTACCATGCATGACCTCAACACAATCCTACAGTCTTTTTTGGAGAGAAACGTCAACCTTGGTTCATCCAGTTGTTTAACAGGCCACAAGGGTCACCATGTTCCCACGAGGCTCGCTCCTCTGATTTTTTTTAATGGTTCCTGTGACTTTTGTATTGTCTAAtaatcaaaaatgtattttgttttcaaaagGAATTAAGTAACACCTTGATAAGCAGAACTGGTCAAACTGATGTCCATTACAACATTTTGATGAGAGAAGTTCTCATTTTATTTAACAGGTTTAATAAAATATTACCTACACAATGTGCTTGTTTCAGGTTTTTACATGAGTCAGAAATGTTTGTATAATGTCAGTCCTCACCAAATCCTCCTCTCTTATTCTCCTCAGAGAGCGCAATATTTAGGGTTCTTATTGGATAAAGTCCCCTCCTGATGTTTTTTAGAAGAATGTCTGTCAGCTCAGCTGCAGTCATGTGATCTGGTAGATACCACCTACTGTGTTATGTTGAGTGGTAAAACCTTTTGTCTGTTATGCAGTGTAGCTACGTTCAGTTTCTACCCATCCAATCAGTCTAATGCCAATTTTGTCAGGTTTGGAGTTGCTTCATACCAGGTTTGGAGTTGCTTCAAGTTTCAGGCTCTGTCAGGCTCACTGTTTGACCCCTGAATCGGCCTCAATATTTACATTTACAAACAAGTAGTGACATATATGAAGCACAGATCAATAAAAGTTGAAATTTAACAGTCTGCTGAGCAACTCCCAGTCTTTTGCAAAGGAAGAATTCTGCTATTAcacattcagtgtgtgtgtgtgtctctttagaCAGGATAGCAGGTTTCCCGTCTTAATTTTGTCAAGGCTGGCTGTTCATGGACATGGACCTTCGTCTACTATCACTCCTGTTGTTCTGTGTCTGCAGACAAGGACTAACTAATGGAGAAGTATCAAATGATGCTCCAATCCCTCTGGTCCCTCTCATCCCATTGATGCCCAGCCACCCTAAAGAGGAATCAGGGACTTCTGCCCCCAGTACACAGGAGCCTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2359368 lncRNA downstream 21973 21640507 ~ 21679543 (-) True G2063082
TU2359375 lncRNA downstream 51463 21645931 ~ 21650053 (-) True G2063088
TU2359372 lncRNA downstream 52797 21641956 ~ 21648719 (-) True G2063085
TU2359343 lncRNA downstream 65359 21616455 ~ 21636157 (-) True G2063058
TU2359328 lncRNA downstream 85285 21583768 ~ 21616231 (-) True G2063043
TU2359359 lncRNA upstream 12963 21743092 ~ 21749558 (-) True G2063074
TU2359461 lncRNA upstream 70287 21800416 ~ 21800934 (-) True G2063171
TU2359473 lncRNA upstream 83049 21813178 ~ 21813407 (-) True G2063183
TU2359474 lncRNA upstream 84159 21814288 ~ 21814519 (-) True G2063184
TU2359489 lncRNA upstream 92706 21822835 ~ 21823061 (-) True G2063197
NM_001246351.1 mRNA downstream 53 21698313 ~ 21701463 (-) True serpinf2b
XM_021588002.2 mRNA downstream 8191 21684117 ~ 21693325 (-) True LOC110507775
XM_036965513.1 mRNA downstream 33008 21655130 ~ 21668508 (-) True LOC110507773
XM_021587998.2 mRNA downstream 282148 21414351 ~ 21419368 (-) True LOC110507770
XM_036965791.1 mRNA downstream 287752 21327283 ~ 21413764 (-) True LOC110507127
XM_021588005.2 mRNA upstream 111332 21841461 ~ 22067487 (-) True LOC110507777
XM_036964663.1 mRNA upstream 629470 22359599 ~ 22374956 (-) False LOC110507779
XM_021588010.2 mRNA upstream 629470 22359599 ~ 22375584 (-) False LOC110507779
XM_021588012.2 mRNA upstream 629470 22359599 ~ 22375584 (-) False LOC110507779
XM_021588011.2 mRNA upstream 629470 22359599 ~ 22377296 (-) False LOC110507779
TU2358893 other downstream 397388 21297665 ~ 21304128 (-) True LOC110507126
TU2358915 other downstream 428715 21270167 ~ 21272801 (-) True LOC110507765
TU2358911 other downstream 428828 21270167 ~ 21272688 (-) False LOC110507765
TU2358439 other downstream 779141 20914114 ~ 20922375 (-) True LOC110507754
TU2354506 other downstream 3778764 17922342 ~ 17922752 (-) True G2058724
TU2360564 other upstream 982534 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other upstream 982534 22712663 ~ 22717020 (-) False LOC110507789
TU2360569 other upstream 982534 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other upstream 982534 22712663 ~ 22718106 (-) False LOC110507789
TU2360712 other upstream 1074129 22804258 ~ 22808106 (-) False zbtb16b

Expression Profile