RNA id: XM_021588005.2


Basic Information

Item Value
RNA id XM_021588005.2
length 4483
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110507777
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 21841461 ~ 22067487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGAGAGGGTGCAGTGATGAGCCAGAGTGGACCCACAGCTCTACTTTCTTTCGTCTACATTGAGCGCAGAATGGCGAAAGTCTGCATTCTCTGAGGGAGAGGCGTAAATTGAAAGGTCCTCACAGATAAGACCGGAGAACGGCAGGAATTTTACTGCAGCTCCCAAACACTACGGGAAAGCGCGGGAATATATTATTGGAGGGATTTATACGGAACGAAACTCATCAAAGTCCACGTTTTTAATCAGGATTTGAGGACCCAGCGCCTAATCCGACTTCAGAGACGAAATGTGAATCTAAATAACTTCTGTTAATGAAAGATTTGAACGAATATGATATGATCCATCCGACTTCGTTCGAGAAGGAATTTAGATTGCCATTTTAAAATTATTAACTCTATACTTGGAGGCTGTGAGCACAGTCGTTTTGCCCAAAACATGGTGATAGATGTTTTGCGTTCATTTAAAGTGAGTGTAAAAATGATGGTTATCAAGGGTTGAAACGATCTGTAAGGGGCATCTCACAAGCCGAACACCAGAGTTATTTTGCTTTTGAAAGGACATTTTCAATGCATTTATTCGCAATGCGTAACGTTACCCTTGCGTATTTTCCAAATCCTGCCTGAAAAGGTCCGTCCCATAGACCAGCCTACTCAACGGGATGAGAGGAGACTAACGTTCGTTGACAATTTTATACATCACAACTGAATGTTTTGGCTGGACGGCACGGCGACAAGAGGAGCTACATTCGACACAtcataaaacaaacaaacatttaaaaCTTTTATTTTCATAACTTCGAAACTAGAGAGCGCACGTTTAATCTGGAATACAAGAATAGATGATTTTCAAAAGACTGAGGACGACATAAATCTTCCACCATGTTCAAAGGGGgCTGCGGGCTGGAGTTCCTGCTGGTTCTCTGTGGTCTGGAGCTTTCCTGGTCCTGCCCACACCACTGTATCTGCTACACCGCGCCCAGTACTGTCAGCTGCCAGGCACACAACTTTCTGTCCGTCCCCGAAGGCATTCCCCCGCACAGCGAGCGCATCTTCCTGCAGAACAACAAGATCCACCGGCTGCTGCAGGGCCATTTCAGCCCCACCACGGTCACACTGTGGATCTACTCCAACAACATCACCTACATCGAGCCCTCCACATTCCACGGCTTCGCCCAGCTGGAGGAGCTGGACCTGGGGGACAACCGTCACCTGCGTTCCCTGGCTGCAGACACCTTCCATGGGCTGGGCCGGCTCCATGCTCTGCACCTGTACCGCTGTGGGCTCAGTGCGCTGCCCAGTAACATCTTCCAGGGGCTACGCAACCTGCAGTATCTCTACCTACAGGATAATCACCTGGAGTTCCTGCAGGATGATATCTTTGTGGACCTCCACAACCTGAGCCACCTGTTCCTGCATGGGAACCGTCTGTGGTCGCTGCACCAGAACACCTTCCGGGGGCTGGGGGCCCTGGACCGCCTGCTGCTGCACCACAACCAGCTGCAGTGGGTGGACCGCCTGGCCTTCCACGACCTGCGTCGCCTCACCACCCTCTACCTGTTCAACAACTCACTGACCGAGCTGTCTGGAGACTGCCTGGCACTGCTGCCTGCCCTGGAGTACCTGCGCCTCAACGACAACCCCTGGGAGTGTGACTGCAAGGCCCTGTCGCTGTGGGACTGGCTCAAACGCTTCAGAGGCTCTACTTCGTCCGTAGGCTGTCAGGCCCCGGCCGAGGTGGCTGGGAAGGACCTCAAGCAGCTCCGCAAGGAGGACTTCCCCAACTGCTCTGGCTCTGAGTCCCTGCACCAGAGCAAGACCTGGGCCGGGACTGAAAAGGTGTCTCTGAAGAAGGAGCCACACCCGGTGCCACCTCCTCACTCCCACCCCCACCGTCCTCACCACAACGAGTCACCACACTATCCCTCGCCACCCTCGCCTCTGCCCCATCCACCCCCGTCCATAAGCGGGGAGGGCACAGCATCAGAGGGACAACCTGGGGTGGCGCCCCCTCAGAGGCCAGGCCGCGCTCGGAACTGCACCCGCCAGCGCGTCAGGGGAGGCAAGGGGAAAGGGCAGAATGAGGTGCATACCTTAAAGGAGATAGCCGATAAGGAGTATTCCTCGCCCGATTTTGAAGGGGGCAAATATGACCACACGTCCCCGGATGGCACGGTCACTCGGAGGAAGCATAAGTGCCCTCCCCGGACCACTGTTCGCCCCCCTAGTGGGGTGCAACAAGCCACCAATAGGGCCACGTTCTCCCAGCCCTTAATACATCTCAATGCCATAATGGGAGCTTTGTTGCCCATGACCATTGCCCATATTCTCCGCTGacctagagggagggatagatactGGCTAAACGACAACATTGCAGTCCTTAGACCTGCTCTAGCTCCTGCACAacaaggtctgtgtgtgtgtgtactttgtgtgtgtggttgtgtgtgtaaaACATTGTGTAGGGAGCTGTTTAGACTGAAATAGACTTTCAAACATCAACATCAAATGTGGGATGGGGATGTGTGAGGGACGGGGATGTGTGAGGGACGGGGATGTGTGAGGGACGGGGATGTGTGAGGGACGGGGAGTGAGGAAAGACGAAAGGAAAACACAGAACACGCTTGCACTGCCACTGTTGCCATTATGTTCTCATTTCCTGTTGTCATTTCCTGTTGTCATTTCCTGTTGTCATTTCCTGTTGTCATTTCCGACTCTGCTGAAGCACAGATAACGAAacttttttggggaaaaaaagaGATGGTGAAATGCAGCAATTTAGCTATGAGACAGATAGTCTCTAAGGCAAACGTGTTGAAGCCAGCTTTTAATTATCAGTTCACAGTTTGTAAATCCTTATTGAGGGGTGAAACAGAAAACAGATGACGTGGTGAAAGAAACCATCACAGAGAAGTCTAGCCCAATCTTGTGTTTCATATTATTTGCCAAATGTTTTTTATTACATTAATTGCCAATAGCTGCTGCATAGAATTGGGCCACCGAGGAATTCGAGGGTATTGCTCATCAATAGAGATAAGCAGGAAGCTGCCCGGTCATAAATCATAATTCCATATCAGAACAGGAATGTGCAACGCTCACTTCTTAGCAGAAGTAATGGAAAAGTACAGAAACAGCACTGCAaagagcagcacacacacagaccagtcaGCTCCAGCTCCAGTATGATAACTAGGTCACTTCTGCTCCATGCTCAGGTAACATTGACCCCGAGCTACATATCTAGGTATACATCTTCTGCCTACTTTACAGTACTTCTACAATATTTACATTCTGCTTTATTCATTCCTGCTTCTAAATGTCCTGCCTTTCTACCTGCTCCAGGTCATTTTCTACATGTGCTACTACATATTAAGCTAATATACCCAAGCTGCTAATTATCTGTATGGAGGTGAGTGGGACTGTGGTCCACTCCCATCTCCTTCAAAACCAGTGTGTCCCCCCACGAGAAGGAAGCTGTGAATATTGATGGATCTGTCTATTTCTTGTCTCAAAATGTTGTTTGTTTGATTTTGCCAAGACGTAAAGAGGACCTAGAGATGGAGCCCTATACAGGGTACAGAGCCTTAGGGGTTAAGGGTCAGATTGGCTATTCTCAGTTTCCCAGTGAGGCTTTGGGCTTCGCTGAACAGAACACTCTTCAGTGTGGGCATCCCCTCCTCATTGAGAACGTGAGGAACATTTATATTGTCCTAATCATTGGACATCAAAGGAAAACAACTGCCCAACAAGACTAGAGAAAAAACTAAAACAATATGTGTACCTTAAATGACTTCTGTAATGAATAAAATATTATAAAAGGGGAAAAAATGATTCAATCGAGCATGGCAAAACGTGGACCGCTCTCTTGGAAATAATGGAACTGCTAAAATGCCTCTCTACATTGACTGCTGTTCTTTCAATGGATGTGGGGAACCAAGAGAAAGACAATCACTTCTAAAGTAGCAGGGGTTTAACAGGACCATGGATAGACAAACGGACAGACAGACTACTGCTGGACTACTATCCCCCTGGACTACAGGAGCTTTTTTGCCTCCGGAAAATACAACAATAAGTTGACGATGTTTGTAATAATAATGATGTTAACTGTACCATTAACAATGACAAGAGGACTAACTAACTGCAGTTCTAATATTAACCATTTATTATGAGAATAACAATATTAATGACGTCATCCACAATGAAAACAGGGTTTCTGCTCCCCTGATGAGGGGACAATCTTTCTTTAAATTCATTaacaatttcattttttttggtTTGCTAAAAGGAACATTtttatttccttttttttgttACATCCTGTCTAACTCTTTATCGGATAAAAATGCACAATTCAGTTCCCCCCTACTGTTCCCCATCTATCTCCTGTCTTTGCCATGATTGAAGGGTTCAATAAGTCGTTATCAAAGAACAACAGTACAAAATGTTTATAAAGATATTAAAATCTATATCTTCTTATGTTAAA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2359490 lncRNA downstream 16843 21823519 ~ 21824618 (-) True G2063198
TU2359489 lncRNA downstream 18400 21822835 ~ 21823061 (-) True G2063197
TU2359474 lncRNA downstream 26942 21814288 ~ 21814519 (-) True G2063184
TU2359473 lncRNA downstream 28054 21813178 ~ 21813407 (-) True G2063183
TU2359461 lncRNA downstream 40527 21800416 ~ 21800934 (-) True G2063171
TU2360046 lncRNA upstream 101207 22168694 ~ 22175643 (-) True G2063718
TU2360064 lncRNA upstream 120825 22188312 ~ 22195051 (-) False G2063734
TU2360065 lncRNA upstream 121308 22188795 ~ 22195051 (-) False G2063734
TU2360067 lncRNA upstream 121308 22188795 ~ 22192383 (-) True G2063734
TU2360069 lncRNA upstream 128406 22195893 ~ 22196444 (-) True G2063736
LOC110507129 mRNA downstream 111332 21701516 ~ 21730129 (-) True LOC110507129
NM_001246351.1 mRNA downstream 139998 21698313 ~ 21701463 (-) True serpinf2b
XM_021588002.2 mRNA downstream 148136 21684117 ~ 21693325 (-) True LOC110507775
XM_036965513.1 mRNA downstream 172953 21655130 ~ 21668508 (-) True LOC110507773
XM_021587998.2 mRNA downstream 422093 21414351 ~ 21419368 (-) True LOC110507770
XM_036964663.1 mRNA upstream 292112 22359599 ~ 22374956 (-) False LOC110507779
XM_021588010.2 mRNA upstream 292112 22359599 ~ 22375584 (-) False LOC110507779
XM_021588012.2 mRNA upstream 292112 22359599 ~ 22375584 (-) False LOC110507779
XM_021588011.2 mRNA upstream 292112 22359599 ~ 22377296 (-) False LOC110507779
XM_021588009.2 mRNA upstream 292112 22359599 ~ 22377297 (-) True LOC110507779
TU2358893 other downstream 537333 21297665 ~ 21304128 (-) True LOC110507126
TU2358915 other downstream 568660 21270167 ~ 21272801 (-) True LOC110507765
TU2358911 other downstream 568773 21270167 ~ 21272688 (-) False LOC110507765
TU2358439 other downstream 919086 20914114 ~ 20922375 (-) True LOC110507754
TU2354506 other downstream 3918709 17922342 ~ 17922752 (-) True G2058724
TU2360564 other upstream 645176 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other upstream 645176 22712663 ~ 22717020 (-) False LOC110507789
TU2360569 other upstream 645176 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other upstream 645176 22712663 ~ 22718106 (-) False LOC110507789
TU2360712 other upstream 736771 22804258 ~ 22808106 (-) False zbtb16b

Expression Profile