RNA id: XM_021588098.2



Basic Information


Item Value
RNA id XM_021588098.2
length 1153
RNA type mRNA
GC content 0.46
exon number 8
gene id thyn1
representative False

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 23315142 ~ 23317925 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gacacgtcacgatgtaacggagggtcagtttttcaacttttctccactactatagagccatttccatgtcgatcaacgcatgaatagaaacgtagttcacacccccgattttgaagtcaacatagtcccattagttttctttgtagcctcgtttgaatgtcgcggttggcacatttgtacggaatgggCGTTCTGAGTTTTATGGTTCCGACCACTTCGATTTGCATCTTTATAACGTACCAGCATGGCACCTAAAATGAGAACCCGTGGAACCACAAGAACACTAGAATCCAGCAACGATGAAGAGACAAAAACTAATGCCCACAGTGAGGACTCCTCATTGGAGGCTGGTCAGGCACTCAGGGGGAAGAGGAAAGGTTCCGGAAAGACTGGAAAACAGGAGAGTTCAAAGGCAAAAAAATCACCTGAACGACCACAGTATTGTCACTGGCTGATGAAGTCAGAGCCAGAGAGCCGCTTGGAAAATGGCATAGATGTCAAGTTTGGGATCGAGGATCTGAAGACTCTTCCCAACCAAACTgggtgttgggatggtgttcggaACTACCAAGCCCGTAACTTTATGCGAGACATGAAAGAGGGGCAGCATGCATTCTTCTACCACAGCAACTGCAAGGAGCCTGGAATAGCTGGAGTTATGAAGATTGTAAAGGAGTCCTATGTGGACCACACTCAGTTTGACAAGAAAGATGTCCATTACGACGCCTCCAGCAAGGCAGACAACCCCAAATGGAGTATGGTTGATGTCCAGTTTGAGAGGATGTTGAAGCGCTTCATTCCTCTGTCTGAGTTGAAGAAGATCCACCTGCAGCACAAGGCCAAAGGCGGGTCCCTGAATGGCATGGCTCTCTTCACCAGGGCCAGGCTGTCTGTCCAGCCCCTCACCAGTGAGGAATTTGAATTTGTCCTGAGTTTGGAGGACAATGACCCACTGTGAAGATTTTGACAAGATGACCTGGAGAGAAGTTTTCCTGTCTTGTGTATGATGATGCTGCTGCTAATATGTTTACTGTAGGAGAGATCTATTGAACCATTATGCTTGTATTAAATGGAAATTGTCTCAAGGTTTCTGTGTTTGTCAAGAGACAGCCTGGAGTTTATTTCTAATATTAAAGAGGTATTATTGACAGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2361592 lncRNA downstream 105211 23202397 ~ 23209931 (-) False igsf9ba
TU2361594 lncRNA downstream 105211 23202397 ~ 23209931 (-) True igsf9ba
TU2361634 lncRNA downstream 115279 23199381 ~ 23199863 (-) True G2065128
TU2361614 lncRNA downstream 152637 23162221 ~ 23162505 (-) True G2065112
TU2361560 lncRNA downstream 212533 23097617 ~ 23102609 (-) True G2065073
TU2361673 lncRNA upstream 9292 23327157 ~ 23342072 (-) True G2065156
TU2361761 lncRNA upstream 97245 23415110 ~ 23415476 (-) True G2065241
TU2361836 lncRNA upstream 184056 23501921 ~ 23502844 (-) True G2065311
TU2361780 lncRNA upstream 224079 23541944 ~ 23545785 (-) True sytl2b
TU2361948 lncRNA upstream 374728 23692593 ~ 23696166 (-) True G2065422
XM_021588049.2 mRNA downstream 38644 23207978 ~ 23276498 (-) False igsf9ba
XM_021588046.2 mRNA downstream 38645 23202514 ~ 23276497 (-) False igsf9ba
XM_021588048.2 mRNA downstream 38646 23202514 ~ 23276496 (-) False igsf9ba
XM_021588045.2 mRNA downstream 117776 23167045 ~ 23197366 (-) True arhgap32a
XM_021588040.2 mRNA downstream 117779 23163866 ~ 23197363 (-) False arhgap32a
XM_021588104.2 mRNA upstream 867 23318732 ~ 23319150 (-) True LOC110507816
XM_021588085.2 mRNA upstream 12157 23330022 ~ 23361504 (-) False esamb
XM_021588083.2 mRNA upstream 12157 23330022 ~ 23408044 (-) False esamb
XM_036964914.1 mRNA upstream 12157 23330022 ~ 23408046 (-) False esamb
XM_036964915.1 mRNA upstream 12157 23330022 ~ 23409999 (-) True esamb
TU2360712 other downstream 507036 22804258 ~ 22808106 (-) False zbtb16b
TU2360713 other downstream 507036 22804258 ~ 22808106 (-) True zbtb16b
TU2360569 other downstream 597036 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other downstream 597036 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other downstream 598122 22712663 ~ 22717020 (-) False LOC110507789
TU2361952 other upstream 385298 23703163 ~ 23705965 (-) True G2065425
TU2362713 other upstream 445834 23763699 ~ 23765479 (-) True G2066096
TU2362745 other upstream 489873 23807738 ~ 23808909 (-) True G2066126
TU2362913 other upstream 818312 24136177 ~ 24181820 (-) True pcp4b
TU2364780 other upstream 2500774 25818639 ~ 25834101 (-) True G2068043

Expression Profile