RNA id: XM_021588085.2


Basic Information

Item Value
RNA id XM_021588085.2
length 2226
RNA type mRNA
GC content 0.53
exon number 7
gene id esamb
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 23330022 ~ 23409999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGCAGTCACACTAGCTGTTGAGCAGCCCCTAGCCTAGCTagatgtacgtgtgtgtgcggaCTTGTCCCTCTTGCTGAACGTGTGTTTGCGTTTATGGGGACTGGGGGTTAAGACCCTCTTCTTATAGGGTTATTGTTTTTGTGGACTAGGGATTTGAGACCCTCGTCACGTCACGCTGAGGGGGTTGTCTGTCCGTGTGTGGAGGGggttattctgtgtgtgtgtgtgtgtgtgggggacctAGCTCCAAGCTGGCGGATCGGGAGGACTCAGATTGCTCGGATCAGATGATCCATCTTCAGCTGACCATCTCAGGGGATTGGCCAGCACCCTGTGACTCCCAGCGGGTGGAGATGCCCAGGAGAGAGATCGAGGTGGTGAAGGGTCAGATGGTAGTCCTACAGGCCTGGTACAGCCCCACATCTGATATTGGTAGGAACAGCGTCATCTGGAACTTCATGGCAAATGACTCCAAGCAGgtCATCTCCTACAGTAACGGTGAGCCAGGGATAGGTAGTCCTGAGTTCAGGAAGCGTGTTGGGTTCAGCCTGTCCATGCCCTCGTCCAATCTCTCCATCTACATCAACAACACCCAGGAGTCAGACTCGGGACGATACCTCTGCAATGTCATCATCCCTGGAGCCGCCGGACTCTCTGGAGAAATGCGCCTCAATGTCAAAGtcccTCCCTCGCCTCCAGTGTGCACGATGACTGGGTCATCTGTGCTGAATGGCAATGTGACACTAAGCTGTAAGTCCAGTTTGGGCGAACCCATCCCTCATTACAAATGGACCAAGAATGCCCCCATGTCAGAGGTCTTCTTTTCCCCCATGCAGAATGAGAGGCAAGGTACCCTAAGGTTGAGTAACCTCACTAAGAGCATGTCAGGGAAATATGTGTGCCGAGCTAGCAACACTGCCGGTTCTGACACTTGCTCTGTCAACCTGGAGGTCTTCACCTCCTCTAATTCTGGAGtgattgctgctgctactctgggGTCCATCGTGGGACTGGTAGCCATCATACTCTTCCTCATCTTCATGCTGAGGAGGAGAGACCACGAAGAGGAGATAGCCAATGATATCAAGGAGGATGCCCAGGCACCCAAGCGTGTTTCCTGGGCAAAGAGTGGCACAGGCTCAGACATCATCTCCAAAAATGGCACGCTGTCATCCATAGCCACAAGCCCCCATCCGGGAGACCCCCAGCAGCTCAAAAACTTCCCCTACCCCACTGCACCGGCCTCTGACACGGGCTCTGTGCTCAACGCCTACCGCCTTCGGCCTGGAGAGCTCAACCCCCTGCAGGGCCTCCCAGGGTACATCAGTGGCACACTTCCACCCAGGCACACCAGACCCCTCTGTGTTGCTAACAACATTGATGCCACCTATCCACAAGGGCACAGTCGTTCTAATCACATCAGTGGGACTCCACCCCCTGGCCACACCCGGCTCCTCAGCACTAGTATCATTGTTGACACTCCTCCCCATGGGTTCAGTCAACCAcccagttttaaccatgttgGTGTCACCTCTCCACATGGGTACAGCAGACCCCATAGTTCTAACAACATTGGTGCCCCCTCCCCCCAGGGGCACAGTCAACCCCCAAGTTCTAACAATATCGGCGCCCTCTCTCCACATGGGCACAGCAGACCACCAAGCTTGAACCACATCAGTGGCAGCTCTCCACACAGGCACAGCCGACCCCCCAGCATCAGTAGCATGCCTCACTATGGACACAGCAGATCCTCCAGTTCTAACGGTGCCCCACCTGGATCCCATTCCCCACCTGGCCACATGGTCACAGACCCCGACAAGACTGAGGGGGCCCAGCCCAAGGTACCACGCCCTCTCACCTCGCCCATCAGCTCCACCACCCTGGCCCGTATGGGGGCTGTGCCCGTCATGGTGCCCGCTCAGAGCCAGGCTGGATCACTGGTATAGCCCACTGGAGGGTCTCCCGTTTTACTACTGAACACAAACGGATAAAGACTTCCTCAAAGGAAGATTGCATAGAGTAGAGAAGGATTTGCTTGGAATTAAAAACACTTTTTTATTGTGATTGTTCAAAATGATGTTCGGAGTAGAAAGAAGAGCTGAAGAAGACACTTGTGGAATCTCCTGTATTCAAGTCTGCACAAGTTCAAAGACTTAATtgatttgtttttattattttagctgttttcaaatattttttgctaaataaatgtttttgctTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2361592 lncRNA downstream 120091 23202397 ~ 23209931 (-) False igsf9ba
TU2361594 lncRNA downstream 120091 23202397 ~ 23209931 (-) True igsf9ba
TU2361634 lncRNA downstream 130159 23199381 ~ 23199863 (-) True G2065128
TU2361614 lncRNA downstream 167517 23162221 ~ 23162505 (-) True G2065112
TU2361560 lncRNA downstream 227413 23097617 ~ 23102609 (-) True G2065073
TU2361761 lncRNA upstream 53606 23415110 ~ 23415476 (-) True G2065241
TU2361836 lncRNA upstream 140417 23501921 ~ 23502844 (-) True G2065311
TU2361780 lncRNA upstream 180440 23541944 ~ 23545785 (-) True sytl2b
TU2361948 lncRNA upstream 331089 23692593 ~ 23696166 (-) True G2065422
TU2362719 lncRNA upstream 407639 23769143 ~ 23771981 (-) True G2066101
XM_021588104.2 mRNA downstream 10872 23318732 ~ 23319150 (-) True LOC110507816
XM_021588099.2 mRNA downstream 12097 23315142 ~ 23317925 (-) True thyn1
XM_021588098.2 mRNA downstream 12157 23315142 ~ 23317865 (-) False thyn1
XM_021588049.2 mRNA downstream 53524 23207978 ~ 23276498 (-) False igsf9ba
XM_021588046.2 mRNA downstream 53525 23202514 ~ 23276497 (-) False igsf9ba
XM_036964716.1 mRNA upstream 141805 23503309 ~ 23513183 (-) False hspa8b
XM_036964715.1 mRNA upstream 141805 23503309 ~ 23513406 (-) True hspa8b
XM_021588037.2 mRNA upstream 163159 23524663 ~ 23545464 (-) False sytl2b
XM_036965417.1 mRNA upstream 163159 23524663 ~ 23545465 (-) False sytl2b
XM_021588038.2 mRNA upstream 163159 23524663 ~ 23546366 (-) False sytl2b
TU2360712 other downstream 521916 22804258 ~ 22808106 (-) False zbtb16b
TU2360713 other downstream 521916 22804258 ~ 22808106 (-) True zbtb16b
TU2360569 other downstream 611916 22712663 ~ 22718106 (-) False LOC110507789
TU2360575 other downstream 611916 22712663 ~ 22718106 (-) False LOC110507789
TU2360567 other downstream 613002 22712663 ~ 22717020 (-) False LOC110507789
TU2361952 other upstream 341659 23703163 ~ 23705965 (-) True G2065425
TU2362713 other upstream 402195 23763699 ~ 23765479 (-) True G2066096
TU2362745 other upstream 446234 23807738 ~ 23808909 (-) True G2066126
TU2362913 other upstream 774673 24136177 ~ 24181820 (-) True pcp4b
TU2364780 other upstream 2457135 25818639 ~ 25834101 (-) True G2068043

Expression Profile