RNA id: XM_036965085.1



Basic Information


Item Value
RNA id XM_036965085.1
length 1143
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118944705
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 27817113 ~ 27818709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


actctgtggtttctgatgcacaaagcagagggtcatctccaaccggaactgtaactgatataggcagtctactgagtggtaagtcctaccctctgccatctttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCTTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccATTCATGATGGGAAACAAGAAGGATTCCAATAAGAAATCCCGCCATTCTGAATCCAAAGACCAGACTACTGCTGAAGATATCATGTTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCTTATCCAAGCCATTCAAACGGTTTTCAAAGCAAGCTTAATACAACAATTTCCTTTAATACAGTAATATTTGCATTGAATTGATGGCCTTTGTCTTCTTTAGTGTTGCCCTGTTAACACATTTGATTAGAAAATACATAgtatatttagtttagtttattatgcAGTCATAGTCACGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2367289 lncRNA downstream 13459 27753068 ~ 27803654 (-) True G2070342
TU2367294 lncRNA downstream 23634 27770159 ~ 27793479 (-) True G2070346
TU2367290 lncRNA downstream 28070 27755443 ~ 27789043 (-) True G2070343
TU2367286 lncRNA downstream 72858 27743988 ~ 27744255 (-) True G2070339
TU2367285 lncRNA downstream 74332 27742552 ~ 27742781 (-) True G2070338
TU2367303 lncRNA upstream 14126 27832835 ~ 27833495 (-) True G2070353
TU2367304 lncRNA upstream 15184 27833893 ~ 27921841 (-) True G2070354
TU2367324 lncRNA upstream 66783 27885492 ~ 27886330 (-) True LOC118944700
TU2367328 lncRNA upstream 81348 27900057 ~ 27900680 (-) True G2070374
TU2367388 lncRNA upstream 175745 27994454 ~ 27994718 (-) True G2070420
XM_036965084.1 mRNA downstream 3850 27811641 ~ 27813263 (-) True LOC118944704
XM_036965071.1 mRNA downstream 18514 27796265 ~ 27798599 (-) True LOC118944697
XM_036964654.1 mRNA downstream 30699 27783271 ~ 27786414 (-) True LOC118944650
XM_036965073.1 mRNA downstream 36647 27778804 ~ 27780466 (-) True LOC118944699
XM_036965088.1 mRNA downstream 42450 27773351 ~ 27774663 (-) True LOC118944708
XM_036965078.1 mRNA upstream 18452 27837161 ~ 27839026 (-) True LOC118944702
XM_036964656.1 mRNA upstream 20856 27839565 ~ 27844424 (-) True LOC118944651
XM_036965081.1 mRNA upstream 32624 27851333 ~ 27855315 (-) False LOC118944703
XM_036965079.1 mRNA upstream 32628 27851337 ~ 27855315 (-) False LOC118944703
XM_036965080.1 mRNA upstream 32629 27851338 ~ 27855315 (-) True LOC118944703
TU2366760 other downstream 276504 27540000 ~ 27540609 (-) True G2069842
TU2366602 other downstream 356465 27448220 ~ 27460648 (-) False LOC110507887
TU2366604 other downstream 369615 27434255 ~ 27447498 (-) True LOC110507886
TU2366607 other downstream 383983 27430172 ~ 27433130 (-) False LOC110507886
TU2366532 other downstream 412735 27349973 ~ 27404378 (-) True LOC110507885
TU2367315 other upstream 50515 27869224 ~ 27870095 (-) True LOC118944698
TU2367316 other upstream 54000 27872709 ~ 27889358 (-) True LOC118944653
TU2367516 other upstream 352129 28170838 ~ 28172542 (-) True G2070530
TU2367763 other upstream 705237 28523946 ~ 28524550 (-) True G2070744
TU2368344 other upstream 1122645 28941354 ~ 28942728 (-) False G2071247

Expression Profile