RNA id: XM_036965079.1


Basic Information

Item Value
RNA id XM_036965079.1
length 2601
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC118944703
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 27851333 ~ 27855315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgCATTCCACCCTGATCTATCAGCTGCAATAGCAAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggcggctggaaagagtgcatccgatacagtccttactgagctgaagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTCATGTTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGCCAGGTCATGGACTCTGTGGTTTCTGATGCACAAAGCATAGGGGCATCTCCAACCGGAACTTTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCCTCTGCCATCTTTCTCCgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCTTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGATGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccATTCATGATGGGAAACAAGAAGGATTCCAATAAGAATTCCCGCCATTCTGAATCCAAAGACCAGACTACTGCTGAAGATATCATGTTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCCTATCCAAGCCATTCAAACGGTTTTCAAACTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATCATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGGAAAAATTGGGAGAATGAAAGTGCACTCCTGATTCAGAGAGAAAGATCCAGCTTAATCATCCATACCATTgtttaaattacaataaaaaaacattcaaactgttcctgagttttgaaagacagagaaaggaaaacatCATTATCTTCAGTCTGTTCACACCTGTTCACACAAGTCCTACTGTCCACAATCTCAGGGTTCTTCAATACAAACACACCTGTTTCAGAAAACCTGATCACTTTCACATTCGAACAATGTTTGTAGGATACTTTTCAATAACTCAATAAATGTAAGTGTTGAAACCATACATAGCTGGTAACTTGAGCTCGGCAGAGTAGTTTTGACCTGTGTCCAGATGCAGTCATTTATGTTGTCTAAAGACAATTTGTCTCTTAtaacaatgttatttttctgaataatctaatttaattgactggtaggtagtcactaactatttgtagcatgtgttcctctgtttattgatatttacatggtgtgtatgtgttaagatgttaagtaattaatgttgatattatccaaagggtttttaactgaaatgttaaatgtatttaaaaaatggcAGAATCAAACAGTATTGGAATAGTGACTTGTATTTTGCATCTAGAAGTGTAAGAATTTTAGAAGAATGCTATTTCATCAGTCAAATGTTGCACTGTTTGATAAGACAGGGTAAAGAAAACCTCAATTTTAATTAGTTTAGTTGTGAGTTTGACATTTTACCACAAGAAGTCACTATAATACTATACGTTATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2367303 lncRNA downstream 17842 27832835 ~ 27833495 (-) True G2070353
TU2367289 lncRNA downstream 47683 27753068 ~ 27803654 (-) True G2070342
TU2367294 lncRNA downstream 57858 27770159 ~ 27793479 (-) True G2070346
TU2367290 lncRNA downstream 62294 27755443 ~ 27789043 (-) True G2070343
TU2367286 lncRNA downstream 107082 27743988 ~ 27744255 (-) True G2070339
TU2367324 lncRNA upstream 30177 27885492 ~ 27886330 (-) True LOC118944700
TU2367328 lncRNA upstream 44742 27900057 ~ 27900680 (-) True G2070374
TU2367388 lncRNA upstream 139139 27994454 ~ 27994718 (-) True G2070420
TU2367392 lncRNA upstream 141916 27997231 ~ 27997702 (-) True G2070424
TU2367393 lncRNA upstream 142931 27998246 ~ 27998476 (-) True G2070425
XM_036964656.1 mRNA downstream 6913 27839565 ~ 27844424 (-) True LOC118944651
XM_036965078.1 mRNA downstream 12311 27837161 ~ 27839026 (-) True LOC118944702
XM_036965086.1 mRNA downstream 27576 27816137 ~ 27823761 (-) True LOC118944706
XM_036965085.1 mRNA downstream 32628 27817113 ~ 27818709 (-) True LOC118944705
XM_036965084.1 mRNA downstream 38074 27811641 ~ 27813263 (-) True LOC118944704
XM_036964657.1 mRNA upstream 1214 27856529 ~ 27860168 (-) True LOC118944652
XM_036965072.1 mRNA upstream 10695 27866010 ~ 27871529 (-) False LOC118944698
XM_036964658.1 mRNA upstream 17625 27872940 ~ 27876244 (-) False LOC118944653
XM_036965074.1 mRNA upstream 28098 27883413 ~ 27886802 (-) False LOC118944700
XM_036965075.1 mRNA upstream 28098 27883413 ~ 27886802 (-) False LOC118944700
TU2366760 other downstream 310728 27540000 ~ 27540609 (-) True G2069842
TU2366602 other downstream 390689 27448220 ~ 27460648 (-) False LOC110507887
TU2366604 other downstream 403839 27434255 ~ 27447498 (-) True LOC110507886
TU2366607 other downstream 418207 27430172 ~ 27433130 (-) False LOC110507886
TU2366532 other downstream 446959 27349973 ~ 27404378 (-) True LOC110507885
TU2367315 other upstream 13909 27869224 ~ 27870095 (-) True LOC118944698
TU2367316 other upstream 17394 27872709 ~ 27889358 (-) True LOC118944653
TU2367516 other upstream 315523 28170838 ~ 28172542 (-) True G2070530
TU2367763 other upstream 668631 28523946 ~ 28524550 (-) True G2070744
TU2368344 other upstream 1086039 28941354 ~ 28942728 (-) False G2071247

Expression Profile